Cmc02g0045951 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0045951
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIsopentenyl-diphosphate Delta-isomerase
LocationCMiso1.1chr02: 10427706 .. 10428396 (+)
RNA-Seq ExpressionCmc02g0045951
SyntenyCmc02g0045951
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTACCATAACAACAATGATCATGTTTTTATGTAATATACATAATTGCAAAGACCTCAGCTCCAAGGACATCGAATATGTTTTACTCAAACACCTTACAAGTTAAAACTACTTTCCATCAGCACCAGAGAGAAGACATAGGACCAAGATTTTTTTAAGAAAAAGACAAAAACAGAAGTACCCAATACCATAAAATTGAGCCCACCCACCATCCATCCTCATGAATCCGGATTATATTCACTTTTTGTAGCTGCCTCTCACACCCGGTTTTGGCTTCGACGCCTCGGCAGTAACACGAACAGCGTGGAGATTTGTAACCTTGTCCTCCTCAAAAGGGATTTTGGGATGCTTGGACTCGTGATGAATCTGCATAGACTTGACATCAGGAGCCGTAATCTTGCAGTGCGGGCATTCAAACTTGGCGTGGCCGCCTTTCTCATGGCCAGACCGGTCGGCGAGGCCAGCCTTTCCGCCGCCTCTGTTAGTGGTGGCTGCGTCGATCTTAGCTGCGATCTCCTTCGCGGTATGCTTCTTGGGCTTCGCCTTACCCGTCATGGTTGATTGATGGTTGCTTGTTTTTGGAGTCACAGAAGAAACGAAGGAAATCGATGGGGTTTTTGTTTTTTGAATTTGTTGATTGAGATAGGAGAGGAATTGGAGGGGGAAATTGATGATAGACAGAGAGGATTG

mRNA sequence

TGGTTACCATAACAACAATGATCATGTTTTTATGTAATATACATAATTGCAAAGACCTCAGCTCCAAGGACATCGAATATGTTTTACTCAAACACCTTACAAGTTAAAACTACTTTCCATCAGCACCAGAGAGAAGACATAGGACCAAGATTTTTTTAAGAAAAAGACAAAAACAGAAGTACCCAATACCATAAAATTGAGCCCACCCACCATCCATCCTCATGAATCCGGATTATATTCACTTTTTGTAGCTGCCTCTCACACCCGGTTTTGGCTTCGACGCCTCGGCAGTAACACGAACAGCGTGGAGATTTGTAACCTTGTCCTCCTCAAAAGGGATTTTGGGATGCTTGGACTCGTGATGAATCTGCATAGACTTGACATCAGGAGCCGTAATCTTGCAGTGCGGGCATTCAAACTTGGCGTGGCCGCCTTTCTCATGGCCAGACCGGTCGGCGAGGCCAGCCTTTCCGCCGCCTCTGTTAGTGGTGGCTGCGTCGATCTTAGCTGCGATCTCCTTCGCGGTATGCTTCTTGGGCTTCGCCTTACCCGTCATGGTTGATTGATGGTTGCTTGTTTTTGGAGTCACAGAAGAAACGAAGGAAATCGATGGGGTTTTTGTTTTTTGAATTTGTTGATTGAGATAGGAGAGGAATTGGAGGGGGAAATTGATGATAGACAGAGAGGATTG

Coding sequence (CDS)

ATGCTTGGACTCGTGATGAATCTGCATAGACTTGACATCAGGAGCCGTAATCTTGCAGTGCGGGCATTCAAACTTGGCGTGGCCGCCTTTCTCATGGCCAGACCGGTCGGCGAGGCCAGCCTTTCCGCCGCCTCTGTTAGTGGTGGCTGCGTCGATCTTAGCTGCGATCTCCTTCGCGGTATGCTTCTTGGGCTTCGCCTTACCCGTCATGGTTGA

Protein sequence

MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRGMLLGLRLTRHG
Homology
BLAST of Cmc02g0045951 vs. NCBI nr
Match: KAA8538941.1 (hypothetical protein F0562_025633 [Nyssa sinensis])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
          +LG+VMNLHR D+   +LAVRA  LGV+A   ARPVG+  L++A + G  VDL  D LR 
Sbjct: 29 VLGVVMNLHRFDVGGCDLAVRALVLGVSALFNARPVGQPRLASAPIGGCGVDLRGDFLRR 88

Query: 61 MLLGLRLTRH 71
          +LL L L+ H
Sbjct: 89 VLLRLGLSSH 98

BLAST of Cmc02g0045951 vs. NCBI nr
Match: CAF1697598.1 (unnamed protein product, partial [Brassica napus])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 1   MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
           ML LVM+LHRL IR R+LAVR   L VAAFL+ARPVGE  LS+ASV    V L  +LLR 
Sbjct: 66  MLRLVMDLHRLQIRRRDLAVRTLVLRVAAFLLARPVGEPRLSSASVGQRRVGLGLELLRR 125

Query: 61  MLL 64
           +LL
Sbjct: 126 VLL 128

BLAST of Cmc02g0045951 vs. NCBI nr
Match: KAA8533416.1 (hypothetical protein F0562_031150 [Nyssa sinensis])

HSP 1 Score: 63.5 bits (153), Expect = 8.2e-07
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1   MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
           +L +V+NLHR D+   +LA+RA +LGV+A   +RPVG   L+ A V G  VDL  DLLR 
Sbjct: 216 VLSIVVNLHRFDVGGSDLAMRALELGVSALDESRPVGLTRLAPAPVGGCSVDLRRDLLRR 275

Query: 61  MLLGLRLTRH 71
           +LL LRL+ H
Sbjct: 276 VLLRLRLSGH 285

BLAST of Cmc02g0045951 vs. NCBI nr
Match: ESQ49836.1 (hypothetical protein EUTSA_v10020933mg [Eutrema salsugineum])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 1  MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLR 60
          MLG VM+LHRL+IRS N AVR     V  FL + P+ ++ LS+ASV    +DLS DLLR
Sbjct: 15 MLGFVMDLHRLEIRSCNFAVRTLVFSVTTFLFSGPISDSRLSSASVGQRSIDLSLDLLR 73

BLAST of Cmc02g0045951 vs. NCBI nr
Match: RXI02373.1 (hypothetical protein DVH24_030302 [Malus domestica])

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-05
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1    MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
            M   V+NL RL +R RNL VRA  L V++ +++ PV    L AA+V G  +DL  DLL  
Sbjct: 1114 MPSFVVNLDRLHVRRRNLTVRALHLRVSSLVLSGPVSYPGLPAAAVGGRSIDLGGDLLGR 1173

Query: 61   MLLGLRLTRH 71
            +LLGLR   H
Sbjct: 1174 VLLGLRFACH 1183

BLAST of Cmc02g0045951 vs. ExPASy TrEMBL
Match: A0A5J5BCK4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_025633 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
          +LG+VMNLHR D+   +LAVRA  LGV+A   ARPVG+  L++A + G  VDL  D LR 
Sbjct: 29 VLGVVMNLHRFDVGGCDLAVRALVLGVSALFNARPVGQPRLASAPIGGCGVDLRGDFLRR 88

Query: 61 MLLGLRLTRH 71
          +LL L L+ H
Sbjct: 89 VLLRLGLSSH 98

BLAST of Cmc02g0045951 vs. ExPASy TrEMBL
Match: A0A5J5AU91 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_031150 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1   MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
           +L +V+NLHR D+   +LA+RA +LGV+A   +RPVG   L+ A V G  VDL  DLLR 
Sbjct: 216 VLSIVVNLHRFDVGGSDLAMRALELGVSALDESRPVGLTRLAPAPVGGCSVDLRRDLLRR 275

Query: 61  MLLGLRLTRH 71
           +LL LRL+ H
Sbjct: 276 VLLRLRLSGH 285

BLAST of Cmc02g0045951 vs. ExPASy TrEMBL
Match: V4NSZ9 (Isopentenyl-diphosphate Delta-isomerase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020933mg PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 1  MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLR 60
          MLG VM+LHRL+IRS N AVR     V  FL + P+ ++ LS+ASV    +DLS DLLR
Sbjct: 15 MLGFVMDLHRLEIRSCNFAVRTLVFSVTTFLFSGPISDSRLSSASVGQRSIDLSLDLLR 73

BLAST of Cmc02g0045951 vs. ExPASy TrEMBL
Match: A0A498K9W8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_030302 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-05
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 1    MLGLVMNLHRLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRG 60
            M   V+NL RL +R RNL VRA  L V++ +++ PV    L AA+V G  +DL  DLL  
Sbjct: 1114 MPSFVVNLDRLHVRRRNLTVRALHLRVSSLVLSGPVSYPGLPAAAVGGRSIDLGGDLLGR 1173

Query: 61   MLLGLRLTRH 71
            +LLGLR   H
Sbjct: 1174 VLLGLRFACH 1183

BLAST of Cmc02g0045951 vs. ExPASy TrEMBL
Match: A0A218XPM9 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015973 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 10 RLDIRSRNLAVRAFKLGVAAFLMARPVGEASLSAASVSGGCVDLSCDLLRGML 63
          RLD++ R+LA  A  LGV A L A P+GEASL A +V  GC+DL  +LL G+L
Sbjct: 5  RLDVKGRSLAEGALVLGVPALLDAGPIGEASLPATAVGRGCIDLGGNLLGGVL 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA8538941.11.3e-0752.86hypothetical protein F0562_025633 [Nyssa sinensis][more]
CAF1697598.11.3e-0763.49unnamed protein product, partial [Brassica napus][more]
KAA8533416.18.2e-0751.43hypothetical protein F0562_031150 [Nyssa sinensis][more]
ESQ49836.16.9e-0654.24hypothetical protein EUTSA_v10020933mg [Eutrema salsugineum][more]
RXI02373.15.9e-0547.14hypothetical protein DVH24_030302 [Malus domestica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5J5BCK46.1e-0852.86Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_025633 PE=4 SV=1[more]
A0A5J5AU914.0e-0751.43Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_031150 PE=4 SV=1[more]
V4NSZ93.4e-0654.24Isopentenyl-diphosphate Delta-isomerase OS=Eutrema salsugineum OX=72664 GN=EUTSA... [more]
A0A498K9W82.8e-0547.14Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_030302 PE=4 SV=1[more]
A0A218XPM92.4e-0454.72Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015973 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0045951.1Cmc02g0045951.1mRNA