Cmc02g0045861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0045861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr02: 10309759 .. 10310451 (-)
RNA-Seq Expression	Cmc02g0045861
Synteny	Cmc02g0045861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATTACAGGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATACCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGAACGAGGTTAGACTTTAGTACAGCCTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTGCGATTCGAAAGGAGGGAAAGCTGA

mRNA sequence

ATGGATTTCATTACAGGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATACCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGAACGAGGTTAGACTTTAGTACAGCCTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTGCGATTCGAAAGGAGGGAAAGCTGA

Coding sequence (CDS)

ATGGATTTCATTACAGGACTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATACCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGAACGAGGTTAGACTTTAGTACAGCCTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCATTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCATTTGAGGCCTTGTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATATTGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAGGTGTCTTGCGATTCGAAAGGAGGGAAAGCTGA

Protein sequence

MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAILKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRES

Homology

[Close]

BLAST of Cmc02g0045861 vs. NCBI nr
Match: KAA0040699.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 466.8 bits (1200), Expect = 1.0e-127
Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1255 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1314

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1315 VSDRDARFTSKFWKGLQTAMGSRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1374

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 1375 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1434

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRE 230
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRE
Sbjct: 1435 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRE 1483

[Close]

BLAST of Cmc02g0045861 vs. NCBI nr
Match: KAA0047038.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.0e-127
Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1095 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1154

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER NQVLEDMLRACALEFPGSW
Sbjct: 1155 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERRNQVLEDMLRACALEFPGSW 1214

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL
Sbjct: 1215 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 1274

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDK+FLKVAPMRGVLRFERR
Sbjct: 1275 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKMFLKVAPMRGVLRFERR 1322

[Close]

BLAST of Cmc02g0045861 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 464.2 bits (1193), Expect = 6.8e-127
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636

Query: 61  VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
           DSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
           KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPM+GVLRFERR
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERR 804

[Close]

BLAST of Cmc02g0045861 vs. NCBI nr
Match: KAA0066456.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.2 bits (1193), Expect = 6.8e-127
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1152 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1211

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1212 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1271

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 1272 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1331

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGV+RFERR
Sbjct: 1332 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVVRFERR 1379

[Close]

BLAST of Cmc02g0045861 vs. NCBI nr
Match: KAA0063715.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.2 bits (1193), Expect = 6.8e-127
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1195 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1254

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1255 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1314

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 1315 DSHLHLMEFAYNNSYQATLGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1374

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF+RR
Sbjct: 1375 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRR 1422

[Close]

BLAST of Cmc02g0045861 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 77/216 (35.65%), Postives = 113/216 (52.31%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I
Sbjct: 1174 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1233

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
             SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER  Q L  +LRA A     +W
Sbjct: 1234 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNW 1293

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEA 180
              +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +     
Sbjct: 1294 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKAL 1353

Query: 181  ILKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFL 215
             ++ + ++  AQ   ++  + RRK L   +GD V +
Sbjct: 1354 TIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLV 1389

[Close]

BLAST of Cmc02g0045861 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30
Identity = 76/216 (35.19%), Postives = 112/216 (51.85%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I
Sbjct: 1200 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1259

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
             SDRD R T+  ++ L   +G +   S+A HPQTDGQ+ER  Q L  +LRA       +W
Sbjct: 1260 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNW 1319

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEA 180
              +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +     
Sbjct: 1320 HVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHLKAL 1379

Query: 181  ILKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFL 215
             ++ + ++  AQ   ++  + RRK L   +GD V +
Sbjct: 1380 TIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLV 1415

[Close]

BLAST of Cmc02g0045861 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  LKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLK 216
              ++  ++T   + K Y D++ +++ EF+ GD V +K
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc02g0045861 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  LKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLK 216
              ++  ++T   + K Y D++ +++ EF+ GD V +K
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc02g0045861 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAI 180
              H+ L++ +YNN+  +   M PFE ++      SP+   E+        E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPL---ELPSFSDKTDENSQETIQVF 1168

Query: 181  LKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLK 216
              ++  ++T   + K Y D++ +++ EF+ GD V +K
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK 1201

[Close]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL
Match: A0A5A7THF3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00140 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.0e-128
Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1255 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1314

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMG+RLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1315 VSDRDARFTSKFWKGLQTAMGSRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1374

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 1375 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1434

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRE 230
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRE
Sbjct: 1435 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRE 1483

[Close]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL
Match: A0A5A7TVX7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold829G00230 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.5e-127
Identity = 225/228 (98.68%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1095 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1154

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTER NQVLEDMLRACALEFPGSW
Sbjct: 1155 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERRNQVLEDMLRACALEFPGSW 1214

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL
Sbjct: 1215 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 1274

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDK+FLKVAPMRGVLRFERR
Sbjct: 1275 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKMFLKVAPMRGVLRFERR 1322

[Close]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL
Match: A0A5A7VCR4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002380 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.3e-127
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1195 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1254

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1255 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1314

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQAT+GMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 1315 DSHLHLMEFAYNNSYQATLGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1374

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRF+RR
Sbjct: 1375 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFKRR 1422

[Close]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL
Match: A0A5A7VJE2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005560 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.3e-127
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1152 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1211

Query: 61   VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1212 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1271

Query: 121  DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
            DSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 1272 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1331

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
            KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGV+RFERR
Sbjct: 1332 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVVRFERR 1379

[Close]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.3e-127
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636

Query: 61  VSDRDTRFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRD RFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

Query: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIL 180
           DSHLHLMEFAYNNSYQATIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAI 
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERR 229
           KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPM+GVLRFERR
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERR 804

The following BLAST results are available for this feature:

BLAST of Cmc02g0045861 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040699.1	1.0e-127	98.69	pol protein [Cucumis melo var. makuwa]	[more]
KAA0047038.1	3.0e-127	98.68	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	6.8e-127	98.25	pol protein [Cucumis melo subsp. melo]	[more]
KAA0066456.1	6.8e-127	98.25	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063715.1	6.8e-127	98.25	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0045861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.2e-30	35.65	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.6e-30	35.19	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.0e-29	33.64	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.0e-29	33.64	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.0e-29	33.64	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THF3	5.0e-128	98.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7TVX7	1.5e-127	98.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7VCR4	3.3e-127	98.25	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VJE2	3.3e-127	98.25	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
Q84KB0	3.3e-127	98.25	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cmc02g0045861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..196 e-value: 5.4E-44 score: 151.8
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..192
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 18.309204
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0045861.1	Cmc02g0045861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding