Cmc02g0044961 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0044961
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
LocationCMiso1.1chr02: 8329729 .. 8330007 (-)
RNA-Seq ExpressionCmc02g0044961
SyntenyCmc02g0044961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTTTGCGGTATTGAGGGATAACCAGCTCTATGCAAACAGAAAGAAGTGTGTAATTGCACACTCTCAAATCCAATACTTAGGTCATCAAATATCTAAGAAGGGAGTAAAAGCTAATGAGGAAAAGATTAGAAGTATGATGAATTGGCCTCAACCTACGGATGTAATAGGACTGAGAGGGTTCCTAGGGCTGACCGGTTACTGTAGGAGATTTGTAAAGAGCTATGGAGAAATTGCTGCCCTCTTAACCAAGCTCTTACAAAAAAAATTCATTTAA

mRNA sequence

ATGGTCTTTGCGGTATTGAGGGATAACCAGCTCTATGCAAACAGAAAGAAGTGTGTAATTGCACACTCTCAAATCCAATACTTAGGTCATCAAATATCTAAGAAGGGAGTAAAAGCTAATGAGGAAAAGATTAGAAGTATGATGAATTGGCCTCAACCTACGGATGTAATAGGACTGAGAGGGTTCCTAGGGCTGACCGGTTACTGTAGGAGATTTGTAAAGAGCTATGGAGAAATTGCTGCCCTCTTAACCAAGCTCTTACAAAAAAAATTCATTTAA

Coding sequence (CDS)

ATGGTCTTTGCGGTATTGAGGGATAACCAGCTCTATGCAAACAGAAAGAAGTGTGTAATTGCACACTCTCAAATCCAATACTTAGGTCATCAAATATCTAAGAAGGGAGTAAAAGCTAATGAGGAAAAGATTAGAAGTATGATGAATTGGCCTCAACCTACGGATGTAATAGGACTGAGAGGGTTCCTAGGGCTGACCGGTTACTGTAGGAGATTTGTAAAGAGCTATGGAGAAATTGCTGCCCTCTTAACCAAGCTCTTACAAAAAAAATTCATTTAA

Protein sequence

MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLRGFLGLTGYCRRFVKSYGEIAALLTKLLQKKFI
Homology
BLAST of Cmc02g0044961 vs. NCBI nr
Match: KAA0065995.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 4.6e-34
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFA+LRDNQLYANRKKCV AHSQIQYLGH ISK GV+A+++K+RSM+ WPQP D+ GLR
Sbjct: 662 MVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSMLQWPQPQDITGLR 721

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVKSYGEIAA LTKLLQK
Sbjct: 722 GFLGLTGYYRRFVKSYGEIAAPLTKLLQK 750

BLAST of Cmc02g0044961 vs. NCBI nr
Match: KAA0043868.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK25268.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 6.0e-34
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFAVLRDNQLYANRKKCV AHSQIQYLGH ISKKGV+A+++K+ SM+ WPQP DV GLR
Sbjct: 243 MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMLQWPQPKDVTGLR 302

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVK YGEIAA LTKLLQK
Sbjct: 303 GFLGLTGYYRRFVKGYGEIAAPLTKLLQK 331

BLAST of Cmc02g0044961 vs. NCBI nr
Match: KAA0063770.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK05522.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 7.8e-34
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 0

Query: 1  MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
          MVFAVLRDNQLYAN+KKCV AHSQIQYLGHQISK+GVKA+E+KIRSM++WP+P+DV GLR
Sbjct: 1  MVFAVLRDNQLYANKKKCVFAHSQIQYLGHQISKEGVKADEDKIRSMISWPRPSDVSGLR 60

Query: 61 GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
          GFLGLTGY  +FV+ YGEIAA LTKLLQK
Sbjct: 61 GFLGLTGYYHKFVQGYGEIAAPLTKLLQK 89

BLAST of Cmc02g0044961 vs. NCBI nr
Match: XP_031745419.1 (uncharacterized protein LOC116405630 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.6e-33
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFA+LRD++L+ANR KCVIAHSQ+QYLGH IS +GV+A+E+KIRSM+NWP+P D+ GLR
Sbjct: 609 MVFAILRDHELFANRSKCVIAHSQVQYLGHLISSRGVEADEDKIRSMVNWPRPKDITGLR 668

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVKSYGEIAA LTKLLQK
Sbjct: 669 GFLGLTGYYRRFVKSYGEIAAPLTKLLQK 697

BLAST of Cmc02g0044961 vs. NCBI nr
Match: XP_031742100.1 (uncharacterized protein LOC116404055 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.6e-33
Identity = 70/89 (78.65%), Postives = 82/89 (92.13%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFA+LRD++L+ANR KCVIAHSQ+QYLGH IS +GV+A+E+KIRSM+NWP+P D+ GLR
Sbjct: 739 MVFAILRDHELFANRSKCVIAHSQVQYLGHLISSRGVEADEDKIRSMVNWPRPKDITGLR 798

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVKSYGEIAA LTKLLQK
Sbjct: 799 GFLGLTGYYRRFVKSYGEIAAPLTKLLQK 827

BLAST of Cmc02g0044961 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-21
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 1  MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQ--ISKKGVKANEEKIRSMMNWPQPTDVIG 60
          MV  +   +Q YANRKKC     QI YLGH+  IS +GV A+  K+ +M+ WP+P +   
Sbjct: 6  MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61 LRGFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
          LRGFLGLTGY RRFVK+YG+I   LT+LL+K
Sbjct: 66 LRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

BLAST of Cmc02g0044961 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-12
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           +VF  L D  L     KC     +  +LGH ++  G+K N  K+++++++P PT    +R
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQKK 91
            FLGLTGY R+F+ +Y +IA  +T  L+K+
Sbjct: 443 AFLGLTGYYRKFIPNYADIAKPMTSCLKKR 472

BLAST of Cmc02g0044961 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-11
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           +VF  L    L     KC     +  +LGH ++  G+K N EKI ++  +P PT    ++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
            FLGLTGY R+F+ ++ +IA  +TK L+K
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKK 472

BLAST of Cmc02g0044961 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.7e-11
Identity = 31/86 (36.05%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           +V A L    L  N +K     +Q+++LG+ ++  G+KA+ +K+R++   P PT V  L+
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKL 87
            FLG+T Y R+F++ Y ++A  LT L
Sbjct: 360 RFLGMTSYYRKFIQDYAKVAKPLTNL 385

BLAST of Cmc02g0044961 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-09
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 0

Query: 2   VFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLRG 61
           V   L D  +  +++K       ++YLG  +SK G K++ EK++++  +P+P  V  +R 
Sbjct: 360 VLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRS 419

Query: 62  FLGLTGYCRRFVKSYGEIAALLTKLLQ 89
           FLGL  Y R F+K +  IA  +T +L+
Sbjct: 420 FLGLASYYRVFIKDFAAIARPITDILK 446

BLAST of Cmc02g0044961 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFA+LRDNQLYANRKKCV AHSQIQYLGH ISK GV+A+++K+RSM+ WPQP D+ GLR
Sbjct: 662 MVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSMLQWPQPQDITGLR 721

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVKSYGEIAA LTKLLQK
Sbjct: 722 GFLGLTGYYRRFVKSYGEIAAPLTKLLQK 750

BLAST of Cmc02g0044961 vs. ExPASy TrEMBL
Match: A0A5A7TLY4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004020 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.9e-34
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFAVLRDNQLYANRKKCV AHSQIQYLGH ISKKGV+A+++K+ SM+ WPQP DV GLR
Sbjct: 243 MVFAVLRDNQLYANRKKCVFAHSQIQYLGHIISKKGVEADQDKVHSMLQWPQPKDVTGLR 302

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVK YGEIAA LTKLLQK
Sbjct: 303 GFLGLTGYYRRFVKGYGEIAAPLTKLLQK 331

BLAST of Cmc02g0044961 vs. ExPASy TrEMBL
Match: A0A5A7V989 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00260 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.8e-34
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 0

Query: 1  MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
          MVFAVLRDNQLYAN+KKCV AHSQIQYLGHQISK+GVKA+E+KIRSM++WP+P+DV GLR
Sbjct: 1  MVFAVLRDNQLYANKKKCVFAHSQIQYLGHQISKEGVKADEDKIRSMISWPRPSDVSGLR 60

Query: 61 GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
          GFLGLTGY  +FV+ YGEIAA LTKLLQK
Sbjct: 61 GFLGLTGYYHKFVQGYGEIAAPLTKLLQK 89

BLAST of Cmc02g0044961 vs. ExPASy TrEMBL
Match: A0A5A7TYW6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00690 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.3e-33
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFAVLRDNQLYAN KKCV AHS+IQYLGHQISK GV+A+E+KIRSM+NWP+P+DVI LR
Sbjct: 378 MVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVIELR 437

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVK Y  IA  LTKLLQK
Sbjct: 438 GFLGLTGYYRRFVKGYSNIATPLTKLLQK 466

BLAST of Cmc02g0044961 vs. ExPASy TrEMBL
Match: A0A5D3CA79 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002470 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.3e-33
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 0

Query: 1   MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQISKKGVKANEEKIRSMMNWPQPTDVIGLR 60
           MVFAVLRDNQLYAN KKCV AHS+IQYLGHQISK GV+A+E+KIRSM+NWP+P+DVI LR
Sbjct: 378 MVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVIELR 437

Query: 61  GFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
           GFLGLTGY RRFVK Y  IA  LTKLLQK
Sbjct: 438 GFLGLTGYYRRFVKGYSNIATPLTKLLQK 466

BLAST of Cmc02g0044961 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 4.3e-22
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 1  MVFAVLRDNQLYANRKKCVIAHSQIQYLGHQ--ISKKGVKANEEKIRSMMNWPQPTDVIG 60
          MV  +   +Q YANRKKC     QI YLGH+  IS +GV A+  K+ +M+ WP+P +   
Sbjct: 6  MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61 LRGFLGLTGYCRRFVKSYGEIAALLTKLLQK 90
          LRGFLGLTGY RRFVK+YG+I   LT+LL+K
Sbjct: 66 LRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065995.14.6e-3482.02Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gyp... [more]
KAA0043868.16.0e-3483.15Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK25268.1 Retrotransp... [more]
KAA0063770.17.8e-3482.02Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK05522.1 Transposon T... [more]
XP_031745419.16.6e-3378.65uncharacterized protein LOC116405630 [Cucumis sativus][more]
XP_031742100.16.6e-3378.65uncharacterized protein LOC116404055 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
P925236.0e-2153.85Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ... [more]
P208253.0e-1236.67Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043231.9e-1137.08Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
Q8I7P95.7e-1136.05Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
P104013.1e-0933.33Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
Match NameE-valueIdentityDescription
A0A5A7VJU22.2e-3482.02Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TLY42.9e-3483.15Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7V9893.8e-3482.02Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7TYW69.3e-3380.90Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3CA799.3e-3380.90Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
ATMG00860.14.3e-2253.85DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 41..92
e-value: 3.4E-15
score: 57.8
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 1..39
e-value: 1.8E-8
score: 36.7
NoneNo IPR availablePANTHERPTHR24559:SF345SUBFAMILY NOT NAMEDcoord: 3..89
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 3..89
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0044961.1Cmc02g0044961.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding