Cmc02g0044871 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0044871
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 8027904 .. 8028344 (-)
RNA-Seq Expression	Cmc02g0044871
Synteny	Cmc02g0044871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTTACAATCGATGACTCTCAAGCCATATCTGATCAGCAATGTTACCTAGGTAAGCATTTTGAGATGAAAGACTTAGGAAATCTCAACTATTTTCTTGGTCTTGAGCTCTTCTCATCACCTAGTGGTTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGATCTGGTATTACTGATTCTGCCACTTTCTCAACACCTCTGGATCCAAATGTGCGTCTCACTTCTGTTGATGGTGTTCCCCTTGACAATCCCACTTTTTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTATGACTCGTCCAGATATTGCATATCCAGTTCATATTGTTAGTCAGTTCATGGCTGCCCCTTGTACAATTCACTTCACCGTCGTCCTTCGCATTCTTCGCTACATCAAAGGTACTTTTGGTCATGGTCTATAG

mRNA sequence

ATGATTGTTACAATCGATGACTCTCAAGCCATATCTGATCAGCAATGTTACCTAGGTAAGCATTTTGAGATGAAAGACTTAGGAAATCTCAACTATTTTCTTGGTCTTGAGCTCTTCTCATCACCTAGTGGTTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGATCTGGTATTACTGATTCTGCCACTTTCTCAACACCTCTGGATCCAAATGTGCGTCTCACTTCTGTTGATGGTGTTCCCCTTGACAATCCCACTTTTTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTATGACTCGTCCAGATATTGCATATCCAGTTCATATTGTTAGTCAGTTCATGGCTGCCCCTTGTACAATTCACTTCACCGTCGTCCTTCGCATTCTTCGCTACATCAAAGGTACTTTTGGTCATGGTCTATAG

Coding sequence (CDS)

ATGATTGTTACAATCGATGACTCTCAAGCCATATCTGATCAGCAATGTTACCTAGGTAAGCATTTTGAGATGAAAGACTTAGGAAATCTCAACTATTTTCTTGGTCTTGAGCTCTTCTCATCACCTAGTGGTTACTATTTATCTCAAGCAAAATATGCATCTGACCTCCTCAATCGATCTGGTATTACTGATTCTGCCACTTTCTCAACACCTCTGGATCCAAATGTGCGTCTCACTTCTGTTGATGGTGTTCCCCTTGACAATCCCACTTTTTATAGGCAACTTGTTGGCAGCCTAATTTACTTAACTATGACTCGTCCAGATATTGCATATCCAGTTCATATTGTTAGTCAGTTCATGGCTGCCCCTTGTACAATTCACTTCACCGTCGTCCTTCGCATTCTTCGCTACATCAAAGGTACTTTTGGTCATGGTCTATAG

Protein sequence

MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL

Homology

[Close]

BLAST of Cmc02g0044871 vs. NCBI nr
Match: KAA0055912.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS
Sbjct: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           GITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIYLTMTRPDIAYPVHIVSQFM
Sbjct: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTLYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120

Query: 121 AAPCTIHFTVVLRILRYIKG 141
           AAPCTIHFTVVLRILRYIKG
Sbjct: 121 AAPCTIHFTVVLRILRYIKG 140

[Close]

BLAST of Cmc02g0044871 vs. NCBI nr
Match: TYK28115.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 277.7 bits (709), Expect = 5.7e-71
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           MIVT DDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS
Sbjct: 422 MIVTSDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 481

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           GITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIYLTMTRPDIAYPVHIVSQFM
Sbjct: 482 GITDSATFSTPLDPNVRLTSVDGVPLDNPTLYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 541

Query: 121 AAPCTIHFTVVLRILRYIKG 141
           AAPCTIHFTVVLRILRYIKG
Sbjct: 542 AAPCTIHFTVVLRILRYIKG 561

[Close]

BLAST of Cmc02g0044871 vs. NCBI nr
Match: XP_016900875.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 136/145 (93.79%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 2   IVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSG 61
           + T DD QAISDQQCYLGKHFEMKDLGNLNYFLGLEL SSPSGYYLSQ KYASDLLNRSG
Sbjct: 141 LFTRDDPQAISDQQCYLGKHFEMKDLGNLNYFLGLELSSSPSGYYLSQVKYASDLLNRSG 200

Query: 62  ITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFMA 121
           ITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIYLT+TRPDIAYPVHIVSQFMA
Sbjct: 201 ITDSATFSTPLDPNVRLTSVDGVPLDNPTLYRQLVGSLIYLTVTRPDIAYPVHIVSQFMA 260

Query: 122 APCTIHFTVVLRILRYIKGTFGHGL 147
           APCTIHFTVVLRILRYIKG FGHGL
Sbjct: 261 APCTIHFTVVLRILRYIKGAFGHGL 285

[Close]

BLAST of Cmc02g0044871 vs. NCBI nr
Match: KAA0041166.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 128/146 (87.67%), Postives = 135/146 (92.47%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDL+NRS
Sbjct: 614 MIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLVNRS 673

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           GITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLIYLT+TRPDIAY +HIVSQFM
Sbjct: 674 GITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAIHIVSQFM 733

Query: 121 AAPCTIHFTVVLRILRYIKGTFGHGL 147
           AAP TIHFTVVLRILRYIKGT GHGL
Sbjct: 734 AAPRTIHFTVVLRILRYIKGTLGHGL 759

[Close]

BLAST of Cmc02g0044871 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 129/146 (88.36%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1    MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
            MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDLLNRS
Sbjct: 1034 MIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRS 1093

Query: 61   GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
            GITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLIYLT+TRPDIAY VHIVSQFM
Sbjct: 1094 GITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1153

Query: 121  AAPCTIHFTVVLRILRYIKGTFGHGL 147
            AAP TIHFT VLRILRYIKGT GHGL
Sbjct: 1154 AAPRTIHFTAVLRILRYIKGTLGHGL 1179

[Close]

BLAST of Cmc02g0044871 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 18  LGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVR 77
           L   F MKDLG ++YFLG+++ + PSG +LSQ KYA  +LN +G+ D    STPL P   
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL-PLKL 86

Query: 78  LTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRY 137
            +SV      +P+ +R +VG+L YLT+TRPDI+Y V+IV Q M  P    F ++ R+LRY
Sbjct: 87  NSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 138 IKGTFGHGL 147
           +KGT  HGL
Sbjct: 147 VKGTIFHGL 154

[Close]

BLAST of Cmc02g0044871 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.4e-25
Identity = 60/146 (41.10%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 1    MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
            +++T +D   + +    L + F +KD   L+YFLG+E    P+G +LSQ +Y  DLL R+
Sbjct: 1154 ILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLART 1213

Query: 61   GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
             +  +   +TP+ P+ +L+   G  L +PT YR +VGSL YL  TRPDI+Y V+ +SQFM
Sbjct: 1214 NMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFM 1273

Query: 121  AAPCTIHFTVVLRILRYIKGTFGHGL 147
              P   H   + RILRY+ GT  HG+
Sbjct: 1274 HMPTEEHLQALKRILRYLAGTPNHGI 1299

[Close]

BLAST of Cmc02g0044871 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.5e-23
Identity = 56/146 (38.36%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 1    MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
            +++T +D+  +      L + F +K+  +L+YFLG+E    P G +LSQ +Y  DLL R+
Sbjct: 1137 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1196

Query: 61   GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
             +  +   +TP+  + +LT   G  L +PT YR +VGSL YL  TRPD++Y V+ +SQ+M
Sbjct: 1197 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYM 1256

Query: 121  AAPCTIHFTVVLRILRYIKGTFGHGL 147
              P   H+  + R+LRY+ GT  HG+
Sbjct: 1257 HMPTDDHWNALKRVLRYLAGTPDHGI 1282

[Close]

BLAST of Cmc02g0044871 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-13
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1    MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSG--YYLSQAKYASDLLN 60
            M++   D   I+  +  L K F+MKDLG     LG+++    +    +LSQ KY   +L 
Sbjct: 1012 MLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLE 1071

Query: 61   RSGITDSATFSTPLDPNVRL------TSVDGVPLDNPTFYRQLVGSLIY-LTMTRPDIAY 120
            R  + ++   STPL  +++L      T+V+         Y   VGSL+Y +  TRPDIA+
Sbjct: 1072 RFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAH 1131

Query: 121  PVHIVSQFMAAPCTIHFTVVLRILRYIKGTFG 144
             V +VS+F+  P   H+  V  ILRY++GT G
Sbjct: 1132 AVGVVSRFLENPGKEHWEAVKWILRYLRGTTG 1163

[Close]

BLAST of Cmc02g0044871 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 18  LGKHFEMKDLGNLNYFLGLELFSSPSG-YYLSQAKYASDLLNRSGITDSATFSTPLDPNV 77
           L K + MKDLG ++ FLGL +  S +G   LS   Y +   + S I       TPL  + 
Sbjct: 108 LTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSK 167

Query: 78  RLTSVDGVPLDNPTFYRQLVGSLIYLTMT-RPDIAYPVHIVSQFMAAPCTIHFTVVLRIL 137
            L       L + T Y+ +VG L++   T RPDI+YPV ++S+F+  P  IH     R+L
Sbjct: 168 PLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVL 227

Query: 138 RYIKGT 142
           RY+  T
Sbjct: 228 RYLYTT 233

[Close]

BLAST of Cmc02g0044871 vs. ExPASy TrEMBL
Match: A0A5A7UJ64 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00290 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS
Sbjct: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           GITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIYLTMTRPDIAYPVHIVSQFM
Sbjct: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTLYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120

Query: 121 AAPCTIHFTVVLRILRYIKG 141
           AAPCTIHFTVVLRILRYIKG
Sbjct: 121 AAPCTIHFTVVLRILRYIKG 140

[Close]

BLAST of Cmc02g0044871 vs. ExPASy TrEMBL
Match: A0A5D3DXQ2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00210 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.8e-71
Identity = 138/140 (98.57%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           MIVT DDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS
Sbjct: 422 MIVTSDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 481

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           GITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIYLTMTRPDIAYPVHIVSQFM
Sbjct: 482 GITDSATFSTPLDPNVRLTSVDGVPLDNPTLYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 541

Query: 121 AAPCTIHFTVVLRILRYIKG 141
           AAPCTIHFTVVLRILRYIKG
Sbjct: 542 AAPCTIHFTVVLRILRYIKG 561

[Close]

BLAST of Cmc02g0044871 vs. ExPASy TrEMBL
Match: A0A1S4DYS8 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107991074 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.1e-71
Identity = 136/145 (93.79%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 2   IVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSG 61
           + T DD QAISDQQCYLGKHFEMKDLGNLNYFLGLEL SSPSGYYLSQ KYASDLLNRSG
Sbjct: 141 LFTRDDPQAISDQQCYLGKHFEMKDLGNLNYFLGLELSSSPSGYYLSQVKYASDLLNRSG 200

Query: 62  ITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFMA 121
           ITDSATFSTPLDPNVRLTSVDGVPLDNPT YRQLVGSLIYLT+TRPDIAYPVHIVSQFMA
Sbjct: 201 ITDSATFSTPLDPNVRLTSVDGVPLDNPTLYRQLVGSLIYLTVTRPDIAYPVHIVSQFMA 260

Query: 122 APCTIHFTVVLRILRYIKGTFGHGL 147
           APCTIHFTVVLRILRYIKG FGHGL
Sbjct: 261 APCTIHFTVVLRILRYIKGAFGHGL 285

[Close]

BLAST of Cmc02g0044871 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 129/146 (88.36%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1    MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
            MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDLLNRS
Sbjct: 1034 MIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRS 1093

Query: 61   GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
            GITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLIYLT+TRPDIAY VHIVSQFM
Sbjct: 1094 GITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 1153

Query: 121  AAPCTIHFTVVLRILRYIKGTFGHGL 147
            AAP TIHFT VLRILRYIKGT GHGL
Sbjct: 1154 AAPRTIHFTAVLRILRYIKGTLGHGL 1179

[Close]

BLAST of Cmc02g0044871 vs. ExPASy TrEMBL
Match: A0A5D3DWU7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00160 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 129/146 (88.36%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           MI+T DD QAISD QCYLGKHFEMKDLGNLNYFLGLE+ SS SGYYLSQAKYASDLLNRS
Sbjct: 450 MIITGDDPQAISDLQCYLGKHFEMKDLGNLNYFLGLEISSSSSGYYLSQAKYASDLLNRS 509

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           GITDSATFSTPLDPNVRLT  DGVPL++PT YRQLVGSLIYLT+TRPDIAY VHIVSQFM
Sbjct: 510 GITDSATFSTPLDPNVRLTPFDGVPLEDPTLYRQLVGSLIYLTVTRPDIAYAVHIVSQFM 569

Query: 121 AAPCTIHFTVVLRILRYIKGTFGHGL 147
           AAP TIHFT VLRILRYIKGT GHGL
Sbjct: 570 AAPRTIHFTAVLRILRYIKGTLGHGL 595

[Close]

BLAST of Cmc02g0044871 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.4e-27
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 18  LGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRSGITDSATFSTPLDPNVR 77
           L   F MKDLG ++YFLG+++ + PSG +LSQ KYA  +LN +G+ D    STPL P   
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL-PLKL 86

Query: 78  LTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRY 137
            +SV      +P+ +R +VG+L YLT+TRPDI+Y V+IV Q M  P    F ++ R+LRY
Sbjct: 87  NSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRY 146

Query: 138 IKGTFGHGL 147
           +KGT  HGL
Sbjct: 147 VKGTIFHGL 154

[Close]

BLAST of Cmc02g0044871 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-25
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   MIVTIDDSQAISDQQCYLGKHFEMKDLGNLNYFLGLELFSSPSGYYLSQAKYASDLLNRS 60
           +I+  ++  A+ + +  L   F+++DLG L YFLGLE+  S +G  + Q KYA DLL+ +
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  GITDSATFSTPLDPNVRLTSVDGVPLDNPTFYRQLVGSLIYLTMTRPDIAYPVHIVSQFM 120
           G+      S P+DP+V  ++  G    +   YR+L+G L+YL +TR DI++ V+ +SQF 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 121 AAPCTIHFTVVLRILRYIKGTFGHGL 147
            AP   H   V++IL YIKGT G GL
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGL 432

[Close]

BLAST of Cmc02g0044871 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 100 IYLTMTRPDIAYPVHIVSQFMAAPCTIHFTVVLRILRYIKGTFGHGL 147
           +YLT+TRPD+ + V+ +SQF +A  T     V ++L Y+KGT G GL
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL 47

The following BLAST results are available for this feature:

BLAST of Cmc02g0044871 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055912.1	1.1e-71	99.29	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK28115.1	5.7e-71	98.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_016900875.1	1.3e-70	93.79	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
KAA0041166.1	3.6e-65	87.67	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0043149.1	3.6e-65	88.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc02g0044871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	3.4e-26	48.06	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	8.4e-25	41.10	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.5e-23	38.36	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	4.3e-13	34.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	1.8e-11	36.51	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc02g0044871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJ64	5.6e-72	99.29	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DXQ2	2.8e-71	98.57	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S4DYS8	6.1e-71	93.79	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3DG18	1.7e-65	88.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWU7	1.7e-65	88.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc02g0044871 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.4e-27	48.06	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	2.3e-25	40.41	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	2.3e-06	46.81	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..72 e-value: 1.9E-11 score: 44.0
None	No IPR available	PANTHER	PTHR11439:SF335	SUBFAMILY NOT NAMED	coord: 21..146
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 21..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0044871.1	Cmc02g0044871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding