Cmc02g0044791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0044791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 7992336 .. 7992830 (+)
RNA-Seq Expression	Cmc02g0044791
Synteny	Cmc02g0044791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGAAATGACAACTATTGAGAAGAATGGAACATGGAAAATGGTAGATTTATCGGAAGGAAAAAATGCAATTGGCTTGAAGTGGGTGTATAAGACGAAATTTGCTGCAGATGGGAGCTTAGAGAAGCACAAAGCTCGTCTTGTGGTAAAAGGATATGCACAACAACATGGTATTGATTTCGAGGAAACTTTCTCTCCTGTAGCTCGTTTCAAAACTATGAGGATTGTTCTAGCATTGGCAGCACAACAACAATGGCCGGTCTATCAATTTGATGTCAAATCAGCCTTTCTTAATGGAGAATTGCAAGAAGAAGTCTATGTTGAACAACCAGAAGGTTTTGTTAAAAAGAACAGCGAAGAAAAGGTGTATAAGTTAACAAAGGTGTTGTATGGGTTGAACAAGCTCCTCGGGCGTGGTATAGTAAAATCGACGGATATTTTTACCAAAATGGATTCAAAAAGAGTGCAAATGAGCCTACCTTGTATGTGA

mRNA sequence

ATGAAGGAAGAAATGACAACTATTGAGAAGAATGGAACATGGAAAATGGTAGATTTATCGGAAGGAAAAAATGCAATTGGCTTGAAGTGGGTGTATAAGACGAAATTTGCTGCAGATGGGAGCTTAGAGAAGCACAAAGCTCGTCTTGTGGTAAAAGGATATGCACAACAACATGGTATTGATTTCGAGGAAACTTTCTCTCCTGTAGCTCGTTTCAAAACTATGAGGATTGTTCTAGCATTGGCAGCACAACAACAATGGCCGGTCTATCAATTTGATGTCAAATCAGCCTTTCTTAATGGAGAATTGCAAGAAGAAGTCTATGTTGAACAACCAGAAGGTTTTGTTAAAAAGAACAGCGAAGAAAAGGTGTATAAGTTAACAAAGGTGTTGTATGGGTTGAACAAGCTCCTCGGGCGTGGTATAGTAAAATCGACGGATATTTTTACCAAAATGGATTCAAAAAGAGTGCAAATGAGCCTACCTTGTATGTGA

Coding sequence (CDS)

ATGAAGGAAGAAATGACAACTATTGAGAAGAATGGAACATGGAAAATGGTAGATTTATCGGAAGGAAAAAATGCAATTGGCTTGAAGTGGGTGTATAAGACGAAATTTGCTGCAGATGGGAGCTTAGAGAAGCACAAAGCTCGTCTTGTGGTAAAAGGATATGCACAACAACATGGTATTGATTTCGAGGAAACTTTCTCTCCTGTAGCTCGTTTCAAAACTATGAGGATTGTTCTAGCATTGGCAGCACAACAACAATGGCCGGTCTATCAATTTGATGTCAAATCAGCCTTTCTTAATGGAGAATTGCAAGAAGAAGTCTATGTTGAACAACCAGAAGGTTTTGTTAAAAAGAACAGCGAAGAAAAGGTGTATAAGTTAACAAAGGTGTTGTATGGGTTGAACAAGCTCCTCGGGCGTGGTATAGTAAAATCGACGGATATTTTTACCAAAATGGATTCAAAAAGAGTGCAAATGAGCCTACCTTGTATGTGA

Protein sequence

MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLNKLLGRGIVKSTDIFTKMDSKRVQMSLPCM

Homology

[Close]

BLAST of Cmc02g0044791 vs. NCBI nr
Match: KAA0050371.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK03584.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 7.1e-70
Identity = 137/158 (86.71%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 7   TIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETF 66
           TIEKNGTWKMVDLSE KNAIGLKWVYKTKFA  GSLEKHKARLV KGYAQQHGIDFEE F
Sbjct: 38  TIEKNGTWKMVDLSEEKNAIGLKWVYKTKFATYGSLEKHKARLVAKGYAQQHGIDFEEIF 97

Query: 67  SPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYK 126
           SPVARF+T+RIVLALAAQQQW +YQFDVKSAFLNGELQEEVYVEQPEGFVKK+SEEKVYK
Sbjct: 98  SPVARFETVRIVLALAAQQQWSIYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSEEKVYK 157

Query: 127 LTKVLYGLNKLLGRGIVKSTDIFTKMDSKRVQMSLPCM 165
           LTK LYGL +   RGI KS DIF+KMD K VQMSLPCM
Sbjct: 158 LTKALYGLKQASRRGIAKSMDIFSKMDPKGVQMSLPCM 195

[Close]

BLAST of Cmc02g0044791 vs. NCBI nr
Match: TYK28116.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 16  MVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTM 75
           MVDL EGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTM
Sbjct: 1   MVDLPEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTM 60

Query: 76  RIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLN 135
           RIVLAL AQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLN
Sbjct: 61  RIVLALPAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLN 120

Query: 136 KLLGRG 142
           KLLGRG
Sbjct: 121 KLLGRG 126

[Close]

BLAST of Cmc02g0044791 vs. NCBI nr
Match: KAA0033341.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-60
Identity = 123/156 (78.85%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           MKEEM  IEKNGTWK+VDL EGKNAIGLKWVYKTKFAADGSLEKHKARLV KGYAQQHGI
Sbjct: 423 MKEEMKAIEKNGTWKIVDLLEGKNAIGLKWVYKTKFAADGSLEKHKARLVAKGYAQQHGI 482

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DFEETFS VARF+T+RIVLA A QQQWPVYQFDVKS FLNGELQEEVYVEQP+GFVKK++
Sbjct: 483 DFEETFSLVARFETVRIVLAFATQQQWPVYQFDVKSVFLNGELQEEVYVEQPKGFVKKDN 542

Query: 121 EEKVYKLTKVLYGLNKLLGRGIVKSTDIFTKMDSKR 157
           EEKVYKLTK LYGL +       K  + F +   KR
Sbjct: 543 EEKVYKLTKALYGLKQAPRAWYSKIDEYFQQNGFKR 578

[Close]

BLAST of Cmc02g0044791 vs. NCBI nr
Match: KAA0059765.1 (integrase [Cucumis melo var. makuwa] >TYJ99778.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 3.0e-60
Identity = 119/136 (87.50%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           MKEEM  IEKNGTWKMVDL EGKNAIGLKWVYK+KF  +GSLEKHKARLV KGYAQQHGI
Sbjct: 197 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFIVNGSLEKHKARLVAKGYAQQHGI 256

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DFEETFSPVARF+T+RIVLALAAQQQWPVYQFDVKSAFLNGEL+EE  VEQPEGFVKK+S
Sbjct: 257 DFEETFSPVARFETVRIVLALAAQQQWPVYQFDVKSAFLNGELEEEFCVEQPEGFVKKDS 316

Query: 121 EEKVYKLTKVLYGLNK 137
           EEKVYKLTK LYGL +
Sbjct: 317 EEKVYKLTKALYGLKQ 332

[Close]

BLAST of Cmc02g0044791 vs. NCBI nr
Match: KAA0054939.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           MKEEM  IEKNGTWKMVDL EGKNAIGLKWVYK+KFAADGSLEKHKA LV KG+AQQHGI
Sbjct: 452 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSLEKHKAHLVAKGHAQQHGI 511

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DFEETFS VARF+T+RIVLALAAQQQW VYQFDVK AFLNGELQEEVYVEQPEGFVKK+S
Sbjct: 512 DFEETFSIVARFETVRIVLALAAQQQWSVYQFDVKPAFLNGELQEEVYVEQPEGFVKKDS 571

Query: 121 EEKVYKLTKVLYGLNK 137
           EEKVYKLTK LYGL +
Sbjct: 572 EEKVYKLTKALYGLKQ 587

[Close]

BLAST of Cmc02g0044791 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.0e-34
Identity = 77/164 (46.95%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           M+EEM +++KNGT+K+V+L +GK  +  KWV+K K   D  L ++KARLVVKG+ Q+ GI
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DF+E FSPV +  ++R +L+LAA     V Q DVK+AFL+G+L+EE+Y+EQPEGF     
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121 EEKVYKLTKVLYGLNKLLGRGIVKSTDIFTKMDSKRVQMSLPCM 165
           +  V KL K LYGL +   +  +K  D F K  +     S PC+
Sbjct: 950 KHMVCKLNKSLYGLKQAPRQWYMK-FDSFMKSQTYLKTYSDPCV 992

[Close]

BLAST of Cmc02g0044791 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-27
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 1    MKEEMTTIEKNGTWKMV-DLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHG 60
            M  E+     N TW +V         +G +W++  KF +DGSL ++KARLV KGY Q+ G
Sbjct: 955  MGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPG 1014

Query: 61   IDFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKN 120
            +D+ ETFSPV +  ++RIVL +A  + WP+ Q DV +AFL G L +EVY+ QP GFV K+
Sbjct: 1015 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKD 1074

Query: 121  SEEKVYKLTKVLYGLNK 137
              + V +L K +YGL +
Sbjct: 1075 RPDYVCRLRKAIYGLKQ 1091

[Close]

BLAST of Cmc02g0044791 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.9e-27
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 0


Query: 1    MKEEMTTIEKNGTWKMVDLSEGK-NAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHG 60
            M  E+     N TW +V         +G +W++  K+ +DGSL ++KARLV KGY Q+ G
Sbjct: 972  MGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPG 1031

Query: 61   IDFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKN 120
            +D+ ETFSPV +  ++RIVL +A  + WP+ Q DV +AFL G L ++VY+ QP GF+ K+
Sbjct: 1032 LDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKD 1091

Query: 121  SEEKVYKLTKVLYGLNK 137
                V KL K LYGL +
Sbjct: 1092 RPNYVCKLRKALYGLKQ 1108

[Close]

BLAST of Cmc02g0044791 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-24
Identity = 57/133 (42.86%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 4    EMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFE 63
            E+   + N TW +    E KN +  +WV+  K+   G+  ++KARLV +G+ Q++ ID+E
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   ETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEK 123
            ETF+PVAR  + R +L+L  Q    V+Q DVK+AFLNG L+EE+Y+  P+G +  NS + 
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG-ISCNS-DN 1032

Query: 124  VYKLTKVLYGLNK 137
            V KL K +YGL +
Sbjct: 1033 VCKLNKAIYGLKQ 1043

[Close]

BLAST of Cmc02g0044791 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-16
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           M+EE+  + +N TW +V     +N +G KWV+KTK  +DG+L++ KARLV KG+ Q+ GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFEETFSPVARFKTMRIVLALAAQ 85
            F ET+SPV R  T+R +L +A Q
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Cmc02g0044791 vs. ExPASy TrEMBL
Match: A0A5D3BWT3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00840 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.4e-70
Identity = 137/158 (86.71%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 7   TIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETF 66
           TIEKNGTWKMVDLSE KNAIGLKWVYKTKFA  GSLEKHKARLV KGYAQQHGIDFEE F
Sbjct: 38  TIEKNGTWKMVDLSEEKNAIGLKWVYKTKFATYGSLEKHKARLVAKGYAQQHGIDFEEIF 97

Query: 67  SPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYK 126
           SPVARF+T+RIVLALAAQQQW +YQFDVKSAFLNGELQEEVYVEQPEGFVKK+SEEKVYK
Sbjct: 98  SPVARFETVRIVLALAAQQQWSIYQFDVKSAFLNGELQEEVYVEQPEGFVKKDSEEKVYK 157

Query: 127 LTKVLYGLNKLLGRGIVKSTDIFTKMDSKRVQMSLPCM 165
           LTK LYGL +   RGI KS DIF+KMD K VQMSLPCM
Sbjct: 158 LTKALYGLKQASRRGIAKSMDIFSKMDPKGVQMSLPCM 195

[Close]

BLAST of Cmc02g0044791 vs. ExPASy TrEMBL
Match: A0A5D3DWI5 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00220 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 16  MVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTM 75
           MVDL EGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTM
Sbjct: 1   MVDLPEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGIDFEETFSPVARFKTM 60

Query: 76  RIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLN 135
           RIVLAL AQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLN
Sbjct: 61  RIVLALPAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNSEEKVYKLTKVLYGLN 120

Query: 136 KLLGRG 142
           KLLGRG
Sbjct: 121 KLLGRG 126

[Close]

BLAST of Cmc02g0044791 vs. ExPASy TrEMBL
Match: A0A5A7SV62 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001630 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.0e-61
Identity = 123/156 (78.85%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           MKEEM  IEKNGTWK+VDL EGKNAIGLKWVYKTKFAADGSLEKHKARLV KGYAQQHGI
Sbjct: 423 MKEEMKAIEKNGTWKIVDLLEGKNAIGLKWVYKTKFAADGSLEKHKARLVAKGYAQQHGI 482

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DFEETFS VARF+T+RIVLA A QQQWPVYQFDVKS FLNGELQEEVYVEQP+GFVKK++
Sbjct: 483 DFEETFSLVARFETVRIVLAFATQQQWPVYQFDVKSVFLNGELQEEVYVEQPKGFVKKDN 542

Query: 121 EEKVYKLTKVLYGLNKLLGRGIVKSTDIFTKMDSKR 157
           EEKVYKLTK LYGL +       K  + F +   KR
Sbjct: 543 EEKVYKLTKALYGLKQAPRAWYSKIDEYFQQNGFKR 578

[Close]

BLAST of Cmc02g0044791 vs. ExPASy TrEMBL
Match: A0A5A7V1M6 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00170 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-60
Identity = 119/136 (87.50%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           MKEEM  IEKNGTWKMVDL EGKNAIGLKWVYK+KF  +GSLEKHKARLV KGYAQQHGI
Sbjct: 197 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFIVNGSLEKHKARLVAKGYAQQHGI 256

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DFEETFSPVARF+T+RIVLALAAQQQWPVYQFDVKSAFLNGEL+EE  VEQPEGFVKK+S
Sbjct: 257 DFEETFSPVARFETVRIVLALAAQQQWPVYQFDVKSAFLNGELEEEFCVEQPEGFVKKDS 316

Query: 121 EEKVYKLTKVLYGLNK 137
           EEKVYKLTK LYGL +
Sbjct: 317 EEKVYKLTKALYGLKQ 332

[Close]

BLAST of Cmc02g0044791 vs. ExPASy TrEMBL
Match: A0A5A7UN91 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00520 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 120/136 (88.24%), Postives = 126/136 (92.65%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           MKEEM  IEKNGTWKMVDL EGKNAIGLKWVYK+KFAADGSLEKHKA LV KG+AQQHGI
Sbjct: 452 MKEEMAAIEKNGTWKMVDLPEGKNAIGLKWVYKSKFAADGSLEKHKAHLVAKGHAQQHGI 511

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DFEETFS VARF+T+RIVLALAAQQQW VYQFDVK AFLNGELQEEVYVEQPEGFVKK+S
Sbjct: 512 DFEETFSIVARFETVRIVLALAAQQQWSVYQFDVKPAFLNGELQEEVYVEQPEGFVKKDS 571

Query: 121 EEKVYKLTKVLYGLNK 137
           EEKVYKLTK LYGL +
Sbjct: 572 EEKVYKLTKALYGLKQ 587

[Close]

BLAST of Cmc02g0044791 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 128.3 bits (321), Expect = 5.8e-30
Identity = 65/161 (40.37%), Postives = 100/161 (62.11%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           M +E+  +E   TW++  L   K  IG KWVYK K+ +DG++E++KARLV KGY QQ GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DFEETFSPVARFKTMRIVLALAAQQQWPVYQFDVKSAFLNGELQEEVYVEQPEGFVKKNS 120
           DF ETFSPV +  +++++LA++A   + ++Q D+ +AFLNG+L EE+Y++ P G+  +  
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 E----EKVYKLTKVLYGLNK------------LLGRGIVKS 146
           +      V  L K +YGL +            L+G G V+S
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQS 262

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BLAST of Cmc02g0044791 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MKEEMTTIEKNGTWKMVDLSEGKNAIGLKWVYKTKFAADGSLEKHKARLVVKGYAQQHGI 60
           M+EE+  + +N TW +V     +N +G KWV+KTK  +DG+L++ KARLV KG+ Q+ GI
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFEETFSPVARFKTMRIVLALAAQ 85
            F ET+SPV R  T+R +L +A Q
Sbjct: 104 YFVETYSPVVRTATIRTILNVAQQ 127

The following BLAST results are available for this feature:

BLAST of Cmc02g0044791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050371.1	7.1e-70	86.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK28116.1	2.4e-62	98.41	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0033341.1	1.0e-60	78.85	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0059765.1	3.0e-60	87.50	integrase [Cucumis melo var. makuwa] >TYJ99778.1 integrase [Cucumis melo var. ma...	[more]
KAA0054939.1	5.1e-60	88.24	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK22728.1 p...	[more]

BLAST of Cmc02g0044791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.0e-34	46.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.6e-27	44.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.9e-27	43.80	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.6e-24	42.86	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	4.7e-16	47.62	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0044791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWT3	3.4e-70	86.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWI5	1.2e-62	98.41	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7SV62	5.0e-61	78.85	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V1M6	1.4e-60	87.50	Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00170 PE=4...	[more]
A0A5A7UN91	2.5e-60	88.24	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc02g0044791 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.8e-30	40.37	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.3e-17	47.62	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..136 e-value: 1.0E-45 score: 156.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..136
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0044791.1	Cmc02g0044791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006013	mannose metabolic process
molecular_function	GO:0004559	alpha-mannosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding