Cmc02g0044571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0044571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	serine/arginine-rich SC35-like splicing factor SCL30A
Location	CMiso1.1chr02: 7801025 .. 7803085 (+)
RNA-Seq Expression	Cmc02g0044571
Synteny	Cmc02g0044571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAACAGTGAAAGTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGGTTTGAATACATAGAAGATGTTCTCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATAACAGACCTTCCATATTGCAAGGGATATGGTGGACAGTTTTCTTAGAGAAGGTTTATGGCAGGCCAAATACCTGACCTGATTCTGTGGCTTTACTAAAACTTCTATTTTACAACATTTTCCCTCTTTTGTGCAACAATTTTGCAGAGAACCACGAGGTTTTGGTTTTGTTCAATATGTGGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGATGGCTGTGTTCTTCTTGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGGTATGAAGCTTCCTTGTATCATATATGAGATACTTTATAGACATGAATGTTTGTAATTACTTTTGGATATTTTGTAATATTTAGAAAGTGCTTTTATTAGGCTGAAATGTACTATCCAATAGTTGGTGTACTGTTAACCAGTGTTTTCAAAGCACAATGCACACTCTAAGGTGACAAACTTTTTAATCGTCTCAAGGCGAGAGACGGACAAAAAGACGTTGCCTGATTGAAGTGAGGCGCAGTTAATAAAATAATAAATAGTAATAATATAAATAGAAAAATACATAAGAATATAAAGAAATTAACTCAAATAATCTTGAGGAATAAAATATTTGAAAAAAGATATAGAAATTAAAATGATTTTGTTTCTACTTTGACTCTTTTTCTTCAATTCTCCATTTCTTTGACTTTTCCTTAATTCTACCTTCACAAACTTTGATTGTTTATTTTAGGCCTATTGGATAAGAATGTTTTTTTTTCCGTAACAAAAAAGTTTGAGCAATAGAACAAGGAGTGCGCAAAAGCCAAGTGCCTTACTGAAGTTGCTCACCTTGGGTACTTGCAAGGCATTAAGGCCTTGCCTTGCCATACCACTCCTCTCGCCTCAGTATTGTATGTGTTAAACAAAATTAATATTTCAGTCATACAAACAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCTGCGGTATTCTCGTTCACCTCGATATTCACGTTCCCCGGCTCAACGGCGTGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCTCGTAGTTATGATTATGCATCTCCACCACCAAAACAAAGGGCTTACTCAAGGTATTTTTTAAAATCTATTGCAATTTTGATATCTAGTTCTTATTATGTATAATGCTTTCCTGAACCCATTTTTGAGCCTCAATTTTTTCTGTATCTCAATGCAGATCAGTGTCCCCTCGTGACAGACCAGACAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGAAGATCGTACTCCCGATCTCCACGTCTAGACGGTTCAAGGAGTAGGAGTGATAGTCCAACACGAGGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGGAGCCGTAGTCCCCAACATAGTCCAAGACATGAAGAAGAGTATAGAAGTGAGCCGAATGGTGATCGGAGCCCAGGTCAATAGGCAAGCAGTTCAAACTTGGGAAACTACAATTTACTATTGCCACTGTTTAATTTGATGTTTCCGCTATAGACATCATTTCTTAGTATTGTTGGCTAGCGTTTATTGTTCTTGGGAATTTGTGCTTTATCAAAAATTGATTGTTGAGTACTTTTATTTTTATGCTGTCTTTCGTGTGTTGCGATTGACACTTTACTATTTTCTTTTTGAGCTCGTTTTTTATATAGTTTGCTTTTGTATGCCACATATGTCAATACAGCGCATGAGATTTAAACTTTTGACCTCCACACAAATCAATTGTAGTTTCTCAAGTTTCAAGTGATGTCTAAGTGGGT

mRNA sequence

TTTAACAGTGAAAGTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGGTTTGAATACATAGAAGATGTTCTCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGAGAACCACGAGGTTTTGGTTTTGTTCAATATGTGGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGATGGCTGTGTTCTTCTTGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCTGCGGTATTCTCGTTCACCTCGATATTCACGTTCCCCGGCTCAACGGCGTGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCTCGTAGTTATGATTATGCATCTCCACCACCAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTCGTGACAGACCAGACAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGAAGATCGTACTCCCGATCTCCACGTCTAGACGGTTCAAGGAGTAGGAGTGATAGTCCAACACGAGGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGGAGCCGTAGTCCCCAACATAGTCCAAGACATGAAGAAGAGTATAGAAGTGAGCCGAATGGTGATCGGAGCCCAGGTCAATAGGCAAGCAGTTCAAACTTGGGAAACTACAATTTACTATTGCCACTGTTTAATTTGATGTTTCCGCTATAGACATCATTTCTTAGTATTGTTGGCTAGCGTTTATTGTTCTTGGGAATTTGTGCTTTATCAAAAATTGATTGTTGAGTACTTTTATTTTTATGCTGTCTTTCGTGTGTTGCGATTGACACTTTACTATTTTCTTTTTGAGCTCGTTTTTTATATAGTTTGCTTTTGTATGCCACATATGTCAATACAGCGCATGAGATTTAAACTTTTGACCTCCACACAAATCAATTGTAGTTTCTCAAGTTTCAAGTGATGTCTAAGTGGGT

Coding sequence (CDS)

ATGTTCTCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGAGAACCACGAGGTTTTGGTTTTGTTCAATATGTGGATCCTGCTGATGCTGCAGATGCTAAACACCATATGGATGGCTGTGTTCTTCTTGGTCGGGAGTTGACTGTGGTATTTGCTGAGGAAAACAGGAAGAAACCATCTGATATGAGGGCAAGAGAGAGAGGAAGTGGGCGATTTCATGATCGAAGAAGATCTCCTCTGCGGTATTCTCGTTCACCTCGATATTCACGTTCCCCGGCTCAACGGCGTGGGAGGTATTCTCGTTCACCAGCTCCACGCCATGCAAGGTCTAGGTCTCGTAGTTATGATTATGCATCTCCACCACCAAAACAAAGGGCTTACTCAAGATCAGTGTCCCCTCGTGACAGACCAGACAGTCGAGAGAGGTCTTTCCCACGACAGGAGAGCCGTGGAAGATCGTACTCCCGATCTCCACGTCTAGACGGTTCAAGGAGTAGGAGTGATAGTCCAACACGAGGTCGAAGTCCAAGCCCTGTAAGAGGACGAAGCCTAAGTAGGAGCAGGAGTAGGAGCAAAAGTGTTAGCCGGAGCCGGAGCCGTAGTCCCCAACATAGTCCAAGACATGAAGAAGAGTATAGAAGTGAGCCGAATGGTGATCGGAGCCCAGGTCAATAG

Protein sequence

MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ

Homology

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BLAST of Cmc02g0044571 vs. NCBI nr
Match: XP_008450305.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 isoform X4 [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 2.2e-114
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60
           MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR
Sbjct: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60

Query: 61  KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 120
           KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD
Sbjct: 61  KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 120

Query: 121 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSP 180
           YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSP
Sbjct: 121 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSP 180

Query: 181 SPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 181 SPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 228

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BLAST of Cmc02g0044571 vs. NCBI nr
Match: XP_008450304.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucumis melo] >XP_016900906.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucumis melo] >XP_016900907.1 PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucumis melo])

HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112
Identity = 228/232 (98.28%), Postives = 228/232 (98.28%), Query Frame = 0


Query: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60
           MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR
Sbjct: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60

Query: 61  KKPSDMRARERG----SGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRS 120
           KKPSDMRARERG    SGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRS
Sbjct: 61  KKPSDMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRS 120

Query: 121 RSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR 180
           RSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR
Sbjct: 121 RSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR 180

Query: 181 GRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           GRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 181 GRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 232

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BLAST of Cmc02g0044571 vs. NCBI nr
Match: XP_008450303.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cucumis melo])

HSP 1 Score: 388.3 bits (996), Expect = 4.7e-104
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD
Sbjct: 75  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 134

Query: 79  RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 138
           RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR
Sbjct: 135 RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 194

Query: 139 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSV 198
           DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSV
Sbjct: 195 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSV 254

Query: 199 SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 255 SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of Cmc02g0044571 vs. NCBI nr
Match: XP_008450302.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo])

HSP 1 Score: 382.5 bits (981), Expect = 2.6e-102
Identity = 210/214 (98.13%), Postives = 210/214 (98.13%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERG----SG 78
           EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERG    SG
Sbjct: 75  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSG 134

Query: 79  RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS 138
           RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS
Sbjct: 135 RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS 194

Query: 139 VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR 198
           VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR
Sbjct: 195 VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR 254

Query: 199 SKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 255 SKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

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BLAST of Cmc02g0044571 vs. NCBI nr
Match: XP_011660181.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucumis sativus] >XP_031742929.1 serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 7.5e-102
Identity = 215/232 (92.67%), Postives = 219/232 (94.40%), Query Frame = 0


Query: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60
           MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR
Sbjct: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60

Query: 61  KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 120
           KKPSDMRARERGSGR+HDRRRSP    RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD
Sbjct: 61  KKPSDMRARERGSGRYHDRRRSP---PRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 120

Query: 121 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR--GR 180
           YAS PPKQRAYSRS+SPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRS SPT+   R
Sbjct: 121 YASQPPKQRAYSRSLSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPGSR 180

Query: 181 SPSPVRGRSLSRSRSRSKSV--SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SPSPVRGRSLSRSRSRSKSV  SRSRSRSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 181 SPSPVRGRSLSRSRSRSKSVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 229

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BLAST of Cmc02g0044571 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.0e-42
Identity = 126/222 (56.76%), Postives = 142/222 (63.96%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           +PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP++MRARERG GRF D
Sbjct: 75  DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134

Query: 79  RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 138
           RRR+P RY     YSR         SRSP PR  RSRSRS DY SPPP+ R + RS+SPR
Sbjct: 135 RRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSPPPR-RHHPRSISPR 194

Query: 139 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGR----SPSPVRGRSLSRSRSR 198
           +          R + R RSYSRSP  DGSR RS +P RG+    SPSP R  S S  RSR
Sbjct: 195 EE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSR 254

Query: 199 SKSVSRSRSRSPQHS-----------PRHEEEYRSEPNGDRS 226
           S S  R+RS SP+ S            R    Y  EP   RS
Sbjct: 255 SPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRS 271

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BLAST of Cmc02g0044571 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.1e-37
Identity = 118/214 (55.14%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERG--SGRF 78
           +PRGFGF+Q++DPADAA+AKH MDG +LLGRELTVVFAEENRKKP++MR R+RG  S RF
Sbjct: 76  DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRF 135

Query: 79  HDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVS 138
            DRRRSP      PRYSRSP  RRGR          RSRSRS  Y SPP K R  SRSVS
Sbjct: 136 QDRRRSP------PRYSRSPPPRRGR----------RSRSRSRGYNSPPAK-RHQSRSVS 195

Query: 139 PRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSK 198
           P+DR   +E          RSYSRSP  +GSR RS SP R +S S    RS+S  ++RS 
Sbjct: 196 PQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSY 255

Query: 199 SVSRSRSRS--PQHSPRHEEEYRSEPNGDRSPGQ 229
           +  ++RS+S  P+ S       R   NGDRSP Q
Sbjct: 256 TPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of Cmc02g0044571 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-14
Identity = 84/198 (42.42%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 16  HAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGR 75
           + +E RGF FV++ D  DA DA   MDG VL GREL V  A   R  P D     RG   
Sbjct: 50  YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR--PPDSHHSRRGP-- 109

Query: 76  FHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSV 135
                  P RY       RS + RR R SRS +   +RSRSRS            YSRS 
Sbjct: 110 ------PPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRS-----------RYSRSK 169

Query: 136 SPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRS 195
           S R R  SR RS  +  S  RS S+S  +  SRSRS S +R RSP PV         S+ 
Sbjct: 170 S-RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPV---------SKR 216

Query: 196 KSVSRSRSRSPQHSPRHE 214
           +S SRSRS+SP  SP  E
Sbjct: 230 ESKSRSRSKSPPKSPEEE 216

[Close]

BLAST of Cmc02g0044571 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-14
Identity = 84/198 (42.42%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 16  HAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGR 75
           + +E RGF FV++ D  DA DA   MDG VL GREL V  A   R  P D     RG   
Sbjct: 50  YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR--PPDSHHSRRGP-- 109

Query: 76  FHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSV 135
                  P RY  S    RS + RR R SRS +   +RSRSRS            YSRS 
Sbjct: 110 ------PPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSRSRSRS-----------RYSRSK 169

Query: 136 SPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRS 195
           S R R  SR RS  +  S  RS S+S  +  SRSRS S +R RSP P          S+ 
Sbjct: 170 S-RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPT---------SKR 216

Query: 196 KSVSRSRSRSPQHSPRHE 214
           +S SRSRS+SP  SP  E
Sbjct: 230 ESNSRSRSKSPPKSPEEE 216

[Close]

BLAST of Cmc02g0044571 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-14
Identity = 84/198 (42.42%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 16  HAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGR 75
           + +E RGF FV++ D  DA DA   MDG VL GREL V  A   R  P D     RG   
Sbjct: 50  YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR--PPDSHHSRRGP-- 109

Query: 76  FHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSV 135
                  P RY       RS + RR R SRS +   +RSRSRS            YSRS 
Sbjct: 110 ------PPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRS-----------RYSRSK 169

Query: 136 SPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRS 195
           S R R  SR RS  +  S  RS S+S  +  SRSRS S +R RSP PV         S+ 
Sbjct: 170 S-RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPV---------SKR 216

Query: 196 KSVSRSRSRSPQHSPRHE 214
           +S SRSRS+SP  SP  E
Sbjct: 230 ESKSRSRSKSPPKSPEEE 216

[Close]

BLAST of Cmc02g0044571 vs. ExPASy TrEMBL
Match: A0A1S3BNC0 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.1e-114
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60
           MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR
Sbjct: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60

Query: 61  KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 120
           KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD
Sbjct: 61  KKPSDMRARERGSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYD 120

Query: 121 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSP 180
           YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSP
Sbjct: 121 YASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSP 180

Query: 181 SPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 181 SPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 228

[Close]

BLAST of Cmc02g0044571 vs. ExPASy TrEMBL
Match: A0A1S4DY50 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 5.9e-113
Identity = 228/232 (98.28%), Postives = 228/232 (98.28%), Query Frame = 0


Query: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60
           MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR
Sbjct: 1   MFSSLEEFQVILNLTHAREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENR 60

Query: 61  KKPSDMRARERG----SGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRS 120
           KKPSDMRARERG    SGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRS
Sbjct: 61  KKPSDMRARERGSHTNSGRFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRS 120

Query: 121 RSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR 180
           RSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR
Sbjct: 121 RSYDYASPPPKQRAYSRSVSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR 180

Query: 181 GRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           GRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 181 GRSPSPVRGRSLSRSRSRSKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 232

[Close]

BLAST of Cmc02g0044571 vs. ExPASy TrEMBL
Match: A0A1S3BPL2 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.3e-104
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD
Sbjct: 75  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 134

Query: 79  RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 138
           RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR
Sbjct: 135 RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 194

Query: 139 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSV 198
           DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSV
Sbjct: 195 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSKSV 254

Query: 199 SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 255 SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 284

[Close]

BLAST of Cmc02g0044571 vs. ExPASy TrEMBL
Match: A0A1S3BNX5 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491955 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.2e-102
Identity = 210/214 (98.13%), Postives = 210/214 (98.13%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERG----SG 78
           EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERG    SG
Sbjct: 75  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSHTNSG 134

Query: 79  RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS 138
           RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS
Sbjct: 135 RFHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS 194

Query: 139 VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR 198
           VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR
Sbjct: 195 VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR 254

Query: 199 SKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ
Sbjct: 255 SKSVSRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 288

[Close]

BLAST of Cmc02g0044571 vs. ExPASy TrEMBL
Match: A0A0A0LZX6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 9.9e-92
Identity = 197/214 (92.06%), Postives = 201/214 (93.93%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGR+HD
Sbjct: 193 EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRYHD 252

Query: 79  RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 138
           RRRSP    RSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYAS PPKQRAYSRS+SPR
Sbjct: 253 RRRSP---PRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASQPPKQRAYSRSLSPR 312

Query: 139 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTR--GRSPSPVRGRSLSRSRSRSK 198
           DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRS SPT+   RSPSPVRGRSLSRSRSRSK
Sbjct: 313 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSQSPTQPGSRSPSPVRGRSLSRSRSRSK 372

Query: 199 SV--SRSRSRSPQHSPRHEEEYRSEPNGDRSPGQ 229
           SV  SRSRSRSP+ SPRHEEEYRSEPNGDRSP Q
Sbjct: 373 SVGRSRSRSRSPRRSPRHEEEYRSEPNGDRSPSQ 403

[Close]

BLAST of Cmc02g0044571 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-43
Identity = 126/222 (56.76%), Postives = 142/222 (63.96%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           +PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP++MRARERG GRF D
Sbjct: 75  DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134

Query: 79  RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 138
           RRR+P RY     YSR         SRSP PR  RSRSRS DY SPPP+ R + RS+SPR
Sbjct: 135 RRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSPPPR-RHHPRSISPR 194

Query: 139 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGR----SPSPVRGRSLSRSRSR 198
           +          R + R RSYSRSP  DGSR RS +P RG+    SPSP R  S S  RSR
Sbjct: 195 EE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSR 254

Query: 199 SKSVSRSRSRSPQHS-----------PRHEEEYRSEPNGDRS 226
           S S  R+RS SP+ S            R    Y  EP   RS
Sbjct: 255 SPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRS 271

[Close]

BLAST of Cmc02g0044571 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-42
Identity = 127/225 (56.44%), Postives = 144/225 (64.00%), Query Frame = 0


Query: 17  AREPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSG-R 76
           +R+PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP++MRARERG G R
Sbjct: 85  SRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGSR 144

Query: 77  FHDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSV 136
           F DRRR+P RY     YSR         SRSP PR  RSRSRS DY SPPP+ R + RS+
Sbjct: 145 FRDRRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSPPPR-RHHPRSI 204

Query: 137 SPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGR----SPSPVRGRSLSRS 196
           SPR+          R + R RSYSRSP  DGSR RS +P RG+    SPSP R  S S  
Sbjct: 205 SPREE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPR 264

Query: 197 RSRSKSVSRSRSRSPQHS-----------PRHEEEYRSEPNGDRS 226
           RSRS S  R+RS SP+ S            R    Y  EP   RS
Sbjct: 265 RSRSPSPKRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARSRS 284

[Close]

BLAST of Cmc02g0044571 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 166.0 bits (419), Expect = 3.5e-41
Identity = 104/163 (63.80%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           +PRGFGFVQ++DPADAADAKHHMDG +LLGRELTVVFAEENRKKP++MRARERG GRF D
Sbjct: 75  DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRD 134

Query: 79  RRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVSPR 138
           RRR+P RY     YSR         SRSP PR  RSRSRS DY SPPP+ R + RS+SPR
Sbjct: 135 RRRTPPRY-----YSR---------SRSPPPRRGRSRSRSGDYYSPPPR-RHHPRSISPR 194

Query: 139 DRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPS 182
           +          R + R RSYSRSP  DGSR RS +P RG+S S
Sbjct: 195 EE---------RYDGR-RSYSRSPASDGSRGRSLTPVRGKSRS 212

[Close]

BLAST of Cmc02g0044571 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 156.0 bits (393), Expect = 3.6e-38
Identity = 118/214 (55.14%), Postives = 139/214 (64.95%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERG--SGRF 78
           +PRGFGF+Q++DPADAA+AKH MDG +LLGRELTVVFAEENRKKP++MR R+RG  S RF
Sbjct: 76  DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRF 135

Query: 79  HDRRRSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRSVS 138
            DRRRSP      PRYSRSP  RRGR          RSRSRS  Y SPP K R  SRSVS
Sbjct: 136 QDRRRSP------PRYSRSPPPRRGR----------RSRSRSRGYNSPPAK-RHQSRSVS 195

Query: 139 PRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSRSK 198
           P+DR   +E          RSYSRSP  +GSR RS SP R +S S    RS+S  ++RS 
Sbjct: 196 PQDRRYEKE----------RSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRKNRSY 255

Query: 199 SVSRSRSRS--PQHSPRHEEEYRSEPNGDRSPGQ 229
           +  ++RS+S  P+ S       R   NGDRSP Q
Sbjct: 256 TPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPSQ 262

[Close]

BLAST of Cmc02g0044571 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-15
Identity = 74/183 (40.44%), Postives = 94/183 (51.37%), Query Frame = 0


Query: 19  EPRGFGFVQYVDPADAADAKHHMDGCVLLGRELTVVFAEENRKKPSDMRARERGSGRFHD 78
           EPRGFGFV+Y    DAA+A   M+  V+ GRE+ +VFAEENRK P +MR     SGR  D
Sbjct: 86  EPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGD 145

Query: 79  RR----RSPLRYSRSPRYSRSPAQRRGRYSRSPAPRHARSRSRSYDYASPPPKQRAYSRS 138
            +    RSP R  RS   SRSP +R  R+          S+ R  D  SP  + R+ SRS
Sbjct: 146 YKRTSHRSPRRRYRSHSRSRSPPRRESRH----------SKVREDDLYSPRRRSRSISRS 205

Query: 139 VSPRDRPDSRERSFPRQESRGRSYSRSPRLDGSRSRSDSPTRGRSPSPVRGRSLSRSRSR 198
             PR+  + + R+            RSPR +            R  +P+R R LSRSRSR
Sbjct: 206 PLPRNEREYKSRN-----------CRSPREE------------RVLTPIRSRCLSRSRSR 235

The following BLAST results are available for this feature:

BLAST of Cmc02g0044571 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450305.1	2.2e-114	100.00	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 isoform X4 [Cucu...	[more]
XP_008450304.1	1.2e-112	98.28	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucu...	[more]
XP_008450303.1	4.7e-104	100.00	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Cuc...	[more]
XP_008450302.1	2.6e-102	98.13	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cuc...	[more]
XP_011660181.1	7.5e-102	92.67	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 [Cucumis sativus...	[more]

BLAST of Cmc02g0044571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	4.0e-42	56.76	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	5.1e-37	55.14	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q3MHR5	2.7e-14	42.42	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
P30352	2.7e-14	42.42	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q01130	2.7e-14	42.42	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of Cmc02g0044571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNC0	1.1e-114	100.00	serine/arginine-rich SC35-like splicing factor SCL33 isoform X4 OS=Cucumis melo ...	[more]
A0A1S4DY50	5.9e-113	98.28	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucumis melo ...	[more]
A0A1S3BPL2	2.3e-104	100.00	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Cucumis melo...	[more]
A0A1S3BNX5	1.2e-102	98.13	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Cucumis melo...	[more]
A0A0A0LZX6	9.9e-92	92.06	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G630290 PE=4 SV...	[more]

BLAST of Cmc02g0044571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	2.9e-43	56.76	SC35-like splicing factor 33	[more]
AT1G55310.3	1.4e-42	56.44	SC35-like splicing factor 33	[more]
AT1G55310.2	3.5e-41	63.80	SC35-like splicing factor 33	[more]
AT3G13570.1	3.6e-38	55.14	SC35-like splicing factor 30A	[more]
AT5G18810.1	2.5e-15	40.44	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 5..51 e-value: 3.5E-6 score: 26.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..58 score: 10.42841
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..85 e-value: 4.7E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..172
None	No IPR available	PANTHER	PTHR23147:SF155	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 14..101
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 14..101
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 16..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0044571.1	Cmc02g0044571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding