Cmc02g0044331 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0044331
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionpentatricopeptide repeat-containing protein At1g62350
LocationCMiso1.1chr02: 7386452 .. 7392019 (+)
RNA-Seq ExpressionCmc02g0044331
SyntenyCmc02g0044331
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTGAGAGATCGTGGGTTTAAATTCCACTTGTACACGCAGGCACTTCTTAAGAAAAATGTTTTTAAACCTCACCAAACAGCATCCACTCTCACAAGCTGCATAAACCCCGCCCACTCTCACAAGCTGTACAAAGAGAGAAAAACTCCGGTCCTCTATTGCTTCAAGGTTCCTTCACAATTTTGATGCTTCGTCTTGCTCCAAATCTTCTTCGCAAAATCTCAAGCAGCCCCGTTTCCTCAACCCCTTTCCATCGTTTTTCCCTTTCCACATTTCTCAACCTCGATCTGTTGCAGCAACAGTTGCTGTTACGCTTCATCGCTGGCTCTGCTTCGAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTAGTCAAAGAACTCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGACCTTGTTGCGGTTCTTGTTGAGCTTCAGAGACAGAATCATGTCTTTCTCTGCATGAAAGTATGCCCTCATTTTCTCGCTTTATTGTTATCTCTCTTCCCCTTTATGGCACATGTTGAATTTTCAGCTCTGTTAAGCGACATGAGAAGTTAATTAGTTTCTTGCTAATGTATTGGTTAATTCGGAATTGTTGTAGTTGGGATGAATTACGTACATGGGAATCATTTTGACCTTAGCATTTACGGATTGGCTTGCGAAACTTCGCTTAGCTCAATTCAAATCAGGAGTACTTGCTTGCATTAGCCTTTACACGATGTCTTTTTGAAGTGAATAGAAGTCCCGTTGCTTGCGATCAGGGCTGAAAGATTTTCTTTAACAAGCTGGGTGTGCTGGGGATATAATATAAAAGAACGGCTTAAAAAAGTAGGCTGAATTATCAAATATCAACATGTTATTGAGTTGAGACTGTGTATATGAATGGAAATATTAGTTGGTGCTATTGTTTCATGTTATCTGTACTAGTAATAATATGGGAAGAGGGAAGAGTAGTGATGCAAAGATCGTCAAGTTTCAATGTATTGAGGTTATCTTGGGACAAGTCTTTAAGAAAGCTTAGAATATGTCTTAGAGGTTGAACCATCATGGGTTGACCTAGTGGTAAAAAAGGAGACATAGTCTCAATGACTAAGAGGTCATGGTCCATGAGTTCAATCCATGATGGTCACCTACCAAGAAATTAATTTTCTAAAGTTTCCTTAACACACAAATGTTGTAAGGTCAGCTAGTCAAGCGAGTTATATAAAAAAATATGTCTTTAGAGGTTGGATGAATTAGGAGTGGGTTGTCTTAAACAACGAGATTCTGCTCTCTTGTTAAAGCGGTTTTGGCAGTTCTCCCTGCAAGAAAATAGTCTAGGGAGGAGAGTTATTGTTGTTATATATGCCATATAGTCAAATGGTTGGCTAATTAAACGTCCTAAAATGGTTGCCAGTGGAAGGCCTTGGATATATCTTGAGAAAAATAGGTAATTGTTCCTTGATCTAGTAAATTTGAAGTCTGCAGTGGCACAAAAGTTCGGTTTTGAAAAGATACATGGGCACCACATGCTCCTCTCCTTGTCAAATACCCTGTTTTATATGCCTTATCTTCAAAAACAGAGGCTTCAATCTCAGACTGTTGGTAAGTTACTGCAAATACTTGGTATTTGGGGTCGAGGAGGCACTTTTTTGACTGTGAGATTCCTAGAGGTGCTAAGTTCATAGAGCATATTAAGATTGGTAGGCTGGGAAGTAGTTTGGACTGACTTGTGGAAAGTTGACCTTTTTGGCACTTTGAATGCTTCTGTTTTCCTTCATTTGACGCAGTCTCGTGCCAAATCCAACACCCCTGTTGTTGACTATACATGGGAGATAAAGGTTCCCATGAAAGTGATTTACTTGGTCAGTGATGCATAGAAGTCCAAGCTCCAAAGGAAGTACGAAAAATAGTCTATGCCCCCCTCTTTCTGGTAAGAATTCACAAACCTTTGCCACATATTTTATTCACGAAAGTTTTACTGAGTCTATGTGGGCTTCTTTCTTTGGTGTTTTTGAGGCTAGCATTTGTGTAACCAAGAAGGTGGATCATTGGCCCTTGGAAGCTATTGGGAGCATTGGTAGGGTGTTTTCCCTTTTCCAATTTGTTTAATGAATAATTTATATATATATCCTTGAGTCTCCATGTCAGCTTACACACACTTTAGCCATTCTTGTAGGGCAAAGTTGGTTGGCAAGAAAAACTTGTAGGATAATAAATTCTAAGTAAATGGCCACCCTGTCTTGTCTTAAATCAACAATTGACCCAAAAGCTTAAGCCAGTGGTGATGAAAAATTTAATATTAGATAATCAACACTCCTCCTCGCTTGTGGGCTTGGTATATGAAGAATGGCCAACAAGTTGAAATCAATATTAAATGGGGAGGAAATAACGTTGCAAGGATTTGAACACAAGACCCTTGAACCTCACTGCTCTGATACCATCTTAAATTACTGATTAACTCAAAAGCTTAAGGTAGTGAGTGAAGAAAAATTTAATATTATATCATTCAACACCTTGCACCCATGTTCTCTAAGTTCTTTATTATTTTCACGACCCTTATTGACCAATAGACATTGTCATTGTTGAGTGCATGGCTTTTAAGGGCGAAGTACGGATTTTGGAAGCCTATTGTATGATTAGAATTGTCCTTTTTCAGATTTGGAAGGAAATAAATCAAGACTTTTGGATGTCTAAGTTGGTTGTTTACTTTTGGAACTATGTATTGTATACTACATCTTGCTGGTGTACAAACAACAAAAAATCTTTTCTACTTACAACCTCTCATTATTTTGAATGGTTCTGGATTTGTTGGCTCAGTTGTTGTTTGGCAGGGGCTTTTTCATCCCCTGACCTTTTAGGCCGTCCTATTTCTTTTGTATATAATACAACCTTGTGCTTCTTACAAAAAGATAAAAGAACAAAGAAAATCGATACGTACAAGGAACTTAAATTTTGTAATGTCTTATTGGGAAATTAGTTATAGCAATTCCTATTTGGAGCCTCATGCTTTTGGCAGGGAAATTTTGCAATGCCAAATCCAAAAATACTAGTAGATATTGGGTCGGGGATCAACTCCCTTACCATCAGTAGTAGATCTTGCCGCTCTTTTTGAGTTGCCTGATAAATCTGTCCCCTGCTAATGCCTCTATCTCCTCCTCGACATAGAGGTAACATTTTCCAAGAAGGTGAAGTTCTTCGTGCAGCAAATTTTGCACGGACGAGTTAACATTTTGGCTTGGATCTTGGCCATAGCCTTGGTTGGGCTCACTATTGTGTTGTTTGCAACAAGGTGGCTGAGGACCTTGATCATATACTTTGGAGTTGTGTTTTCACTGCTTAGTTTTGTTTTTATAGCCTTCTTAGCTTCCGGGGTTATAGGAAGTCAATTGAAGTTCTGCATAGGGAACTTCACCCTTTTTCAGTTTATCAGATTGCAAGTTTGGTAGATAAAATGAGTCTATGAGTGGATGCCATTGGGTCAGGAGTGCTGCTTTTGGCAGATAAACAAGTTGAAGTATGCTAGCCTTTTTCAATGTACACCATACATTAGTTTAAGGCTTGTTTGTTTTCTTGGAGGCGAGATGCACATAAAACATGTCCACGAGTGATACACCTATTAAAAACAAAAATTATAGCTCTATATTATTAATTGGGGATGAAGTGCACTATGACATAAGATGCATTGCATAACTTGGCGTGTATGTCTCTGGTGAACAATAAAGTAATTTAACAAATAACAATCCTCTTATGTAACTTTAATTAAAATATATAAAAAATATCTACTTATGCTTAATCTTGTGTTTCATAGTGGGTCTTTGATCAATCTACGTTACTATATTGTACTAAAGTTCATGAGATATTGAAGAAAAAAATTGAAAATATTATATGTCAGAAACAATTTGAGGCATATTTGGCCTAGGTGAGGATAGCTTAGCGGATGCACGACCATCCATCATAGAGGAGGGAGGTTTGGATCCCCTAACCCCTTGTTGTACTAAAAGAAAAAAAGTTGTAGGCAAATTTGTTTGTTTTCTGGTTACTTTTTGGCTTGGAAGGGCCTACTCTTTTTCCAATTATATTTCTCTTAAACCATCATGAGTTGACCTAGTGGTAAGAAAAAGGAGACAATCTCAAATACTAATTGAGAGGTCATGAATTCAACCAATGGTGGTCACCTACTTAGGAATTAATTTCCTACGAGTTTCCTTGACACCTAAATGTTATAGAGTTAGATAGATTGTCTCGTGAGATTAGTGGAGGTACGTGTAAGTTGGCCTACAACGATGGATATCAAAAAAGAATTATATTTCTCTTACAACGAGGCATGCTTATGATCTTATATCCTAAAGAACTACTCTCTACTGTCTTGAAAATTTATCCTATTGTCTTAGGGCCTATTCTCTTTCCAATTATATTGTTTACTATGCATGCATGTTTGGATTGTCTTAGGATCTGTTTTGATAGTTTAATCTTTTGTCTTAGGACCTGTTTGACTAGACAAAAAAATGTTTTTCGAAGAAGTCTTTTTTACTTGAACTTTTTTTTTTGTTAAAAACTTTAATATAAACTCAAAAATGTTTCAAAAGCTATTTTGAGTGATTGTCCAACTCAATTTTTTTTCAAAATGGCTTGTTTTCAAAATTAAATACTTGAAAAGTTAAACCAAACATTTTATTATTTAACAAACCCACCATTTGCATTTCATTAAATAAAAAATGCTTTCTTAAGTTGATAGAGACCTTTGTTTTTATCCCATTGATCGCATTATTGACTCCTGTCTAACCCTTTCAGTTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGGCCCGACATGTTCTTTTATAGAGATATGCTGATGATGCTTGCAAAGAACAAAAGGGTAGAAGAAACAAAACAAGTTTGGGAGGATCTGAAAAAAGAGGGTGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATGCAATGCTCTCTGAGGCCATGGATATCTATCGTGAAATGAGAGAATCTCCTGATAGGCCATTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTATGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGAAACAAGAGTGAAGATGATTAACTAATTAAGAATGCTGCTCTTGCAATTGTAGCCTTTAAGTTTTGAGTTTCGATGTGTCTGTATAGTTTCAAAAATGTCGAAGAAATCTTTGATTTTCAATTACGTAATTGGTTAATTCGTGAACTTTAAAAGTGCGAATTAGTTCTTTAATTTTTTATTTTGTGCGACCTATTAGACATGTTTTAAAATTCATAGGACTATTTGACTCAAGGTAAATCTAGTTGTGTTCAATAAAGGTGTGTTTTGAAAATTGTTCATCATGTCAAAGATTTGTAAGACATTTTTGAACTTCAAAAATTTATTT

mRNA sequence

AACTTGAGAGATCGTGGGTTTAAATTCCACTTGTACACGCAGGCACTTCTTAAGAAAAATGTTTTTAAACCTCACCAAACAGCATCCACTCTCACAAGCTGCATAAACCCCGCCCACTCTCACAAGCTGTACAAAGAGAGAAAAACTCCGGTCCTCTATTGCTTCAAGGTTCCTTCACAATTTTGATGCTTCGTCTTGCTCCAAATCTTCTTCGCAAAATCTCAAGCAGCCCCGTTTCCTCAACCCCTTTCCATCGTTTTTCCCTTTCCACATTTCTCAACCTCGATCTGTTGCAGCAACAGTTGCTGTTACGCTTCATCGCTGGCTCTGCTTCGAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTAGTCAAAGAACTCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGACCTTGTTGCGGTTCTTGTTGAGCTTCAGAGACAGAATCATGTCTTTCTCTGCATGAAATTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGGCCCGACATGTTCTTTTATAGAGATATGCTGATGATGCTTGCAAAGAACAAAAGGGTAGAAGAAACAAAACAAGTTTGGGAGGATCTGAAAAAAGAGGGTGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATGCAATGCTCTCTGAGGCCATGGATATCTATCGTGAAATGAGAGAATCTCCTGATAGGCCATTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTATGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGAAACAAGAGTGAAGATGATTAACTAATTAAGAATGCTGCTCTTGCAATTGTAGCCTTTAAGTTTTGAGTTTCGATGTGTCTGTATAGTTTCAAAAATGTCGAAGAAATCTTTGATTTTCAATTACGTAATTGGTTAATTCGTGAACTTTAAAAGTGCGAATTAGTTCTTTAATTTTTTATTTTGTGCGACCTATTAGACATGTTTTAAAATTCATAGGACTATTTGACTCAAGGTAAATCTAGTTGTGTTCAATAAAGGTGTGTTTTGAAAATTGTTCATCATGTCAAAGATTTGTAAGACATTTTTGAACTTCAAAAATTTATTT

Coding sequence (CDS)

ATGCTTCGTCTTGCTCCAAATCTTCTTCGCAAAATCTCAAGCAGCCCCGTTTCCTCAACCCCTTTCCATCGTTTTTCCCTTTCCACATTTCTCAACCTCGATCTGTTGCAGCAACAGTTGCTGTTACGCTTCATCGCTGGCTCTGCTTCGAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTAGTCAAAGAACTCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGACCTTGTTGCGGTTCTTGTTGAGCTTCAGAGACAGAATCATGTCTTTCTCTGCATGAAATTGTATAACGTGGTTCGTAAAGAAGTATGGTACCGGCCCGACATGTTCTTTTATAGAGATATGCTGATGATGCTTGCAAAGAACAAAAGGGTAGAAGAAACAAAACAAGTTTGGGAGGATCTGAAAAAAGAGGGTGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATGCAATGCTCTCTGAGGCCATGGATATCTATCGTGAAATGAGAGAATCTCCTGATAGGCCATTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTATGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGAAACAAGAGTGAAGATGATTAA

Protein sequence

MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNKSEDD
Homology
[Close]
BLAST of Cmc02g0044331 vs. NCBI nr
Match: XP_008450338.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 497.7 bits (1280), Expect = 6.1e-137
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEDRNKSEDD 257
           EDLFEEDEDRNKSEDD
Sbjct: 241 EDLFEEDEDRNKSEDD 256

[Close]
BLAST of Cmc02g0044331 vs. NCBI nr
Match: XP_004139064.1 (pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Cucumis sativus] >KAE8653533.1 hypothetical protein Csa_007495 [Cucumis sativus])

HSP 1 Score: 494.2 bits (1271), Expect = 6.8e-136
Identity = 253/256 (98.83%), Postives = 254/256 (99.22%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRLAPNLLRKISSSP+SSTPFHRFSLSTFLNLDLLQQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           N MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEDRNKSEDD 257
           EDLFEEDEDRNKSEDD
Sbjct: 241 EDLFEEDEDRNKSEDD 256

[Close]
BLAST of Cmc02g0044331 vs. NCBI nr
Match: XP_038878451.1 (pentatricopeptide repeat-containing protein At1g62350 [Benincasa hispida])

HSP 1 Score: 449.5 bits (1155), Expect = 1.9e-122
Identity = 230/247 (93.12%), Postives = 236/247 (95.55%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRL  NLLR+IS+S  S+TPFHRFSL TFLN DL QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRLTLNLLRRISNSATSTTPFHRFSLPTFLNHDLFQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVL ELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLFELQRQNQVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVW+DLKKEGVLFDQHTFGDIIRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWQDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAM SEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEED 248
           E+LFEE+
Sbjct: 241 EELFEEE 247

[Close]
BLAST of Cmc02g0044331 vs. NCBI nr
Match: XP_022966084.1 (pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022966085.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima])

HSP 1 Score: 431.4 bits (1108), Expect = 5.4e-117
Identity = 223/253 (88.14%), Postives = 232/253 (91.70%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLR+IS+S  S+   +RF+  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDML MLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLTMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQV+DDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVRDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEDRNKS 254
           EDLFEEDEDR KS
Sbjct: 241 EDLFEEDEDRFKS 253

[Close]
BLAST of Cmc02g0044331 vs. NCBI nr
Match: KAG7022139.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429.9 bits (1104), Expect = 1.6e-116
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLR+ S+S  S+   +RF+  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 35  MLRFAPNLLRRFSNSATSTIHLYRFTDCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 94

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 95  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 154

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 155 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 214

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 215 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 274

Query: 241 EDLFEEDEDRNKS 254
           EDLFEEDED  KS
Sbjct: 275 EDLFEEDEDMCKS 287

[Close]
BLAST of Cmc02g0044331 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.5e-82
Identity = 148/194 (76.29%), Postives = 171/194 (88.14%), Query Frame = 0 

Query: 63  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNV 122
           M KEGLI  KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQN VFLCMKLY V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 123 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNA 182
           VR+E+WYRPDMFFYRDMLMMLA+NK+V+ETK+VWEDLKKE VLFDQHTFGD++R +LDN 
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 183 MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPED 242
           +  EAM +Y EMRESPDRPLSLPFRVILKGL+PYPELRE+VKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 243 LFEEDEDRNKSEDD 257
           + E+ ++  +++ D
Sbjct: 181 ICEDSDEEARTDSD 194

[Close]
BLAST of Cmc02g0044331 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.1e-51
Identity = 96/202 (47.52%), Postives = 144/202 (71.29%), Query Frame = 0 

Query: 43  RFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVA 102
           RF  G    P   +WR KK +GKE L V+  LKRL+ +  +LD+FI +HV RLLK D++A
Sbjct: 56  RFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLA 115

Query: 103 VLVELQRQNHVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKE 162
           V+ EL+RQ    L +K++ V++K+ WY+PD+F Y+D+++ LAK+KR++E   +WE +KKE
Sbjct: 116 VIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE 175

Query: 163 GVLFDQHTFGDIIRAYLDNAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQ 222
            +  D  T+ ++IR +L +   ++AM++Y +M +SPD P  LPFRV+LKGL+P+P LR +
Sbjct: 176 NLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNK 235

Query: 223 VKDDFLELFPDMIVYDPPEDLF 245
           VK DF ELFP+   YDPPE++F
Sbjct: 236 VKKDFEELFPEKHAYDPPEEIF 254

[Close]
BLAST of Cmc02g0044331 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-05
Identity = 38/136 (27.94%), Postives = 67/136 (49.26%), Query Frame = 0 

Query: 63  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNV 122
           +  E +  ++ LKR     + L   +   + RL+KSDL++VL EL RQ++  L + + + 
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 123 VRKEVWYRP-DMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN 182
           +R E  Y P D+  Y D++  L +NK  +E  ++  ++       D      +IRA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 183 AMLSEAMDIYREMRES 198
                 + +Y  MRES
Sbjct: 168 ERRESVVRVYTLMRES 180

[Close]
BLAST of Cmc02g0044331 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.4e-05
Identity = 29/112 (25.89%), Postives = 59/112 (52.68%), Query Frame = 0 

Query: 131 PDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMLSEAMDI 190
           PD   Y  +L  ++K  R+ + K++  D+KK G++ ++ T+ +++  Y     L EA  I
Sbjct: 238 PDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQI 297

Query: 191 YREMRESPDRPLSLPFRVILKGLIPYPELRE--QVKDDF--LELFPDMIVYD 239
              M+++   P    + +++ GL     +RE  ++ D    L+L PD++ Y+
Sbjct: 298 VELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYN 349

[Close]
BLAST of Cmc02g0044331 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-04
Identity = 19/99 (19.19%), Postives = 57/99 (57.58%), Query Frame = 0 

Query: 117 MKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIR 176
           ++++ ++R+++WY+P++  Y  +++ML K K+ E+  ++++++  EG + +   +  ++ 
Sbjct: 134 IQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVS 193

Query: 177 AYLDNAMLSEAMDIYREMRESPD-RPLSLPFRVILKGLI 215
           AY  +     A  +   M+ S + +P    + +++K  +
Sbjct: 194 AYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]
BLAST of Cmc02g0044331 vs. ExPASy TrEMBL
Match: A0A1S3BQ11 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucumis melo OX=3656 GN=LOC103491974 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.0e-137
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK
Sbjct: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEDRNKSEDD 257
           EDLFEEDEDRNKSEDD
Sbjct: 241 EDLFEEDEDRNKSEDD 256

[Close]
BLAST of Cmc02g0044331 vs. ExPASy TrEMBL
Match: A0A6J1HQL7 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita maxima OX=3661 GN=LOC111465833 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.6e-117
Identity = 223/253 (88.14%), Postives = 232/253 (91.70%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLR+IS+S  S+   +RF+  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRISNSATSTIHLYRFTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDML MLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLTMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQV+DDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVRDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEDRNKS 254
           EDLFEEDEDR KS
Sbjct: 241 EDLFEEDEDRFKS 253

[Close]
BLAST of Cmc02g0044331 vs. ExPASy TrEMBL
Match: A0A6J1EQI1 (pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita moschata OX=3662 GN=LOC111436516 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115
Identity = 220/253 (86.96%), Postives = 229/253 (90.51%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWRRK 60
           MLR APNLLR+ S+S  S+   +R +  TF      QQQLLLRFI GSASSPSLSIWRRK
Sbjct: 1   MLRFAPNLLRRFSNSATSTIHVYRLTHCTFFEHHRPQQQLLLRFITGSASSPSLSIWRRK 60

Query: 61  KEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLY 120
           KEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDLVAVLVELQRQN VFLCMKLY
Sbjct: 61  KEMGKEGLIVVKELKRIQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQNQVFLCMKLY 120

Query: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLD 180
           NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLK EGVLFDQHTFGDI+RAYLD
Sbjct: 121 NVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKGEGVLFDQHTFGDIMRAYLD 180

Query: 181 NAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPP 240
           NAM SEAMDIYREMR+SPDRPLSLPFRVILKGL+PYPELREQVKDDFLELFPDMIVYDPP
Sbjct: 181 NAMPSEAMDIYREMRQSPDRPLSLPFRVILKGLVPYPELREQVKDDFLELFPDMIVYDPP 240

Query: 241 EDLFEEDEDRNKS 254
           EDLFEEDE   KS
Sbjct: 241 EDLFEEDEGMCKS 253

[Close]
BLAST of Cmc02g0044331 vs. ExPASy TrEMBL
Match: A0A6J1DGX4 (pentatricopeptide repeat-containing protein At1g62350 OS=Momordica charantia OX=3673 GN=LOC111020768 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 7.9e-114
Identity = 217/257 (84.44%), Postives = 230/257 (89.49%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISS--SPVSSTPFHRFSLSTFLNLDLLQQQLLLRFIAGSASSPSLSIWR 60
           MLRL PNLLR+  +  +  ++ PFH  S  TF + D LQQQ L RFI GSASSPSLSIWR
Sbjct: 1   MLRLVPNLLRRAPNRVTRTATIPFHLSSPITFFDRDQLQQQSLFRFITGSASSPSLSIWR 60

Query: 61  RKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMK 120
           RKKEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDLVAVLVELQRQ  VFLCMK
Sbjct: 61  RKKEMGKEGLIVVKELKRLQSNLIRLDRFISSHVSRLLKSDLVAVLVELQRQKQVFLCMK 120

Query: 121 LYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAY 180
           LYNVVRKEVWYRPDMFFYRDMLMML+KNK+VEETKQVW+DLK+E VLFDQHTFGDIIRAY
Sbjct: 121 LYNVVRKEVWYRPDMFFYRDMLMMLSKNKKVEETKQVWQDLKREEVLFDQHTFGDIIRAY 180

Query: 181 LDNAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYD 240
           LDN M SEAMDIYREMR+SPDRPLSLPFRVILKGLIPYPELREQ+KDDFLELFPDMIVYD
Sbjct: 181 LDNGMPSEAMDIYREMRQSPDRPLSLPFRVILKGLIPYPELREQIKDDFLELFPDMIVYD 240

Query: 241 PPEDLFEEDEDRNKSED 256
           PPEDLFEEDEDR +  D
Sbjct: 241 PPEDLFEEDEDRKREYD 257

[Close]
BLAST of Cmc02g0044331 vs. ExPASy TrEMBL
Match: A0A2I4F1J6 (pentatricopeptide repeat-containing protein At1g62350 OS=Juglans regia OX=51240 GN=LOC108994666 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 4.3e-96
Identity = 189/261 (72.41%), Postives = 215/261 (82.38%), Query Frame = 0 

Query: 1   MLRLAPNLLRKISSSPVSSTPFHRFSLSTFLNLDLL-----QQQLLLRFIAGSASSPSLS 60
           MLR A NL RK S S  +  P   FS +  L L        QQ+  LR++AGSASSPSLS
Sbjct: 1   MLRQAQNLFRKTSFSTTTRLPSSPFSPNFPLLLQDTFSKNHQQKWFLRYVAGSASSPSLS 60

Query: 61  IWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFL 120
           IWRR+KEMGKEGLIV KELKRL+ N +RLDRFI SHVSRLLKSDL+AVL E QRQ+ + L
Sbjct: 61  IWRRRKEMGKEGLIVAKELKRLRFNQLRLDRFIRSHVSRLLKSDLLAVLAEFQRQDQILL 120

Query: 121 CMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDII 180
           CMKLY+VVRKE+WYRPDM+FYRDMLMMLA+NK+V+E KQVWEDLKKE VLFDQHTFGDII
Sbjct: 121 CMKLYDVVRKEIWYRPDMYFYRDMLMMLARNKKVDEAKQVWEDLKKEEVLFDQHTFGDII 180

Query: 181 RAYLDNAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMI 240
           RA+LDN + SEAMDIY EMR SPD P+SLPFRVILKGL+PYPELRE++KDDFLELFPDM+
Sbjct: 181 RAFLDNELPSEAMDIYDEMRLSPDPPISLPFRVILKGLLPYPELREKIKDDFLELFPDMV 240

Query: 241 VYDPPEDLFEEDEDRNKSEDD 257
           VYDPPEDLFE ++ R K  DD
Sbjct: 241 VYDPPEDLFEHEDWRKKIGDD 261

[Close]
BLAST of Cmc02g0044331 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 305.8 bits (782), Expect = 3.2e-83
Identity = 148/194 (76.29%), Postives = 171/194 (88.14%), Query Frame = 0 

Query: 63  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNV 122
           M KEGLI  KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQN VFLCMKLY V
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 123 VRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNA 182
           VR+E+WYRPDMFFYRDMLMMLA+NK+V+ETK+VWEDLKKE VLFDQHTFGD++R +LDN 
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 183 MLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPED 242
           +  EAM +Y EMRESPDRPLSLPFRVILKGL+PYPELRE+VKDDFLELFP MIVYDPPED
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 243 LFEEDEDRNKSEDD 257
           + E+ ++  +++ D
Sbjct: 181 ICEDSDEEARTDSD 194

[Close]
BLAST of Cmc02g0044331 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-52
Identity = 96/202 (47.52%), Postives = 144/202 (71.29%), Query Frame = 0 

Query: 43  RFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVA 102
           RF  G    P   +WR KK +GKE L V+  LKRL+ +  +LD+FI +HV RLLK D++A
Sbjct: 56  RFHDGRPRGP---LWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLA 115

Query: 103 VLVELQRQNHVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKE 162
           V+ EL+RQ    L +K++ V++K+ WY+PD+F Y+D+++ LAK+KR++E   +WE +KKE
Sbjct: 116 VIGELERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE 175

Query: 163 GVLFDQHTFGDIIRAYLDNAMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQ 222
            +  D  T+ ++IR +L +   ++AM++Y +M +SPD P  LPFRV+LKGL+P+P LR +
Sbjct: 176 NLFPDSQTYTEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNK 235

Query: 223 VKDDFLELFPDMIVYDPPEDLF 245
           VK DF ELFP+   YDPPE++F
Sbjct: 236 VKKDFEELFPEKHAYDPPEEIF 254

[Close]
BLAST of Cmc02g0044331 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-17
Identity = 69/235 (29.36%), Postives = 114/235 (48.51%), Query Frame = 0 

Query: 33  LDLLQQQLLLRFIAGSASSPSLSIWRRKKEMGKEGLIVVKELKR---------------L 92
           + +LQ+ ++++    S +   L   +R + +  E +  V+ LKR                
Sbjct: 478 IQILQRAMVIKMRDRSKNRKPL---QRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTT 537

Query: 93  QSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNVVRKEVWYRPDMFFYR 152
            S+   LDR I S   RLLK D+VAVL EL RQN   L +K++  +RKE WY+P +  Y 
Sbjct: 538 SSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYT 597

Query: 153 DMLMMLAKNKRVEETKQVWEDLKKE-GVLFDQHTFGDIIRAYLDNAMLSEAMDIYREMRE 212
           DM+ ++A N  +EE   ++  +K E G++ +   F  ++   L++ +    MD Y  M+ 
Sbjct: 598 DMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQS 657

Query: 213 SPDRPLSLPFRVILKGLIPYPE--LREQVKDDFLELFPDMIVYDPPEDLFEEDED 250
               P    FRV++ GL    E  L   V+ D  E + + +      +  EEDE+
Sbjct: 658 IGYEPDRASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESL------EFIEEDEE 703

[Close]
BLAST of Cmc02g0044331 vs. TAIR 10
Match: AT3G42570.1 (peroxidase family protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.3e-07
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 0 

Query: 60 KKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVS 94
          KKE  KEGLI  KELKRLQ+N +RLDRFI SH S
Sbjct: 4  KKEKSKEGLIAAKELKRLQTNLVRLDRFIDSHPS 37

[Close]
BLAST of Cmc02g0044331 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.8e-06
Identity = 38/136 (27.94%), Postives = 67/136 (49.26%), Query Frame = 0 

Query: 63  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKLYNV 122
           +  E +  ++ LKR     + L   +   + RL+KSDL++VL EL RQ++  L + + + 
Sbjct: 48  LSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDYCTLAVHVLST 107

Query: 123 VRKEVWYRP-DMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN 182
           +R E  Y P D+  Y D++  L +NK  +E  ++  ++       D      +IRA +  
Sbjct: 108 LRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGA 167

Query: 183 AMLSEAMDIYREMRES 198
                 + +Y  MRES
Sbjct: 168 ERRESVVRVYTLMRES 180

The following BLAST results are available for this feature:
BLAST of Cmc02g0044331 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450338.16.1e-137100.00PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo][more]
XP_004139064.16.8e-13698.83pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Cucumis sativu... [more]
XP_038878451.11.9e-12293.12pentatricopeptide repeat-containing protein At1g62350 [Benincasa hispida][more]
XP_022966084.15.4e-11788.14pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima] >XP_022... [more]
KAG7022139.11.6e-11687.75Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of Cmc02g0044331 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1PFH74.5e-8276.29Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX... [more]
Q9STF99.1e-5147.52Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q9LVW62.6e-0527.94Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T... [more]
Q9ZVX54.4e-0525.89Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX... [more]
Q9FKC32.2e-0419.19Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
BLAST of Cmc02g0044331 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BQ113.0e-137100.00pentatricopeptide repeat-containing protein At1g62350 OS=Cucumis melo OX=3656 GN... [more]
A0A6J1HQL72.6e-11788.14pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita maxima OX=366... [more]
A0A6J1EQI12.4e-11586.96pentatricopeptide repeat-containing protein At1g62350 OS=Cucurbita moschata OX=3... [more]
A0A6J1DGX47.9e-11484.44pentatricopeptide repeat-containing protein At1g62350 OS=Momordica charantia OX=... [more]
A0A2I4F1J64.3e-9672.41pentatricopeptide repeat-containing protein At1g62350 OS=Juglans regia OX=51240 ... [more]
BLAST of Cmc02g0044331 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G62350.13.2e-8376.29Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G46870.16.5e-5247.52Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G09320.15.2e-1729.36Vacuolar sorting protein 9 (VPS9) domain [more]
AT3G42570.18.3e-0773.53peroxidase family protein [more]
AT3G27750.11.8e-0627.94FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 170..197
e-value: 0.0085
score: 16.3
coord: 136..164
e-value: 0.19
score: 12.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 170..197
e-value: 0.0018
score: 16.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 132..166
score: 8.769097
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 167..201
score: 9.96388
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 62..247
e-value: 4.0E-40
score: 139.1
NoneNo IPR availablePANTHERPTHR46870:SF1BNAC09G13590D PROTEINcoord: 2..253
IPR044795Pentatricopeptide repeat-containing protein THA8L-likePANTHERPTHR46870PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTICcoord: 2..253

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0044331.1Cmc02g0044331.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding