Cmc02g0043991 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0043991
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr02: 6729285 .. 6729857 (+)
RNA-Seq Expression	Cmc02g0043991
Synteny	Cmc02g0043991

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAGAACTGTTACAATTTCAAAGAAATAATCTGTGGACATTGGTTCCTAAACCTGACAAAGCAAATATCGTAGGAACAAAATGGATATTAAAAAACAAGACAAATGAAAAGAGATCAATAACTAAGAACAAAGCCAGGTTGGTTGCGCAAGGCTATTCTCAAGTTGAAGGAGTTGACTTTGATGAAACCTATGCTCTTGTAGCTACACTTAAAGCTATATGCCTTTTACTTAGCATATCATGTATTAGAAAATTCAAGCTTTATCAAATGGATGTTAAAAGTTCCTTTTTAAATGGGTACTTAAATGAAGAAGTATATGTGGCACAACCTAAGGGTTTTATTGATCCAATTTATCCTCAATATGTTTATAAACTAAATAAAACTTTATATTGGATCAAACAAGCCCCCAGGGCTTGGTATGAACGATCACTATCTATCTTAGTCACAAAGGATACTCTACGGGAGGTGCTGACAAGACTCTATTTATTAATAAATCTGACAAGGATAAGATTGTTGCACAAATATATGTTGACGATATCATATTTGGTGGATTTCAAGAAGAGTTAG

mRNA sequence

ATGCAAGAAGAACTGTTACAATTTCAAAGAAATAATCTGTGGACATTGGTTCCTAAACCTGACAAAGCAAATATCGTAGGAACAAAATGGATATTAAAAAACAAGACAAATGAAAAGAGATCAATAACTAAGAACAAAGCCAGGTTGGTTGCGCAAGGCTATTCTCAAGTTGAAGGAGTTGACTTTGATGAAACCTATGCTCTTGTAGCTACACTTAAAGCTATATGCCTTTTACTTAGCATATCATGTATTAGAAAATTCAAGCTTTATCAAATGGATGTTAAAAGTTCCTTTTTAAATGGGTACTTAAATGAAGAAGTATATGTGGCACAACCTAAGGGTTTTATTGATCCAATTTATCCTCAATATGTTTATAAACTAAATAAAACTTTATATTGGATCAAACAAGCCCCCAGGGCTTGGTATGAACGATCACTATCTATCTTAGTCACAAAGGATACTCTACGGGAGGTGCTGACAAGACTCTATTTATTAATAAATCTGACAAGGATAAGATTGTTGCACAAATATATGTTGACGATATCATATTTGGTGGATTTCAAGAAGAGTTAG

Coding sequence (CDS)

ATGCAAGAAGAACTGTTACAATTTCAAAGAAATAATCTGTGGACATTGGTTCCTAAACCTGACAAAGCAAATATCGTAGGAACAAAATGGATATTAAAAAACAAGACAAATGAAAAGAGATCAATAACTAAGAACAAAGCCAGGTTGGTTGCGCAAGGCTATTCTCAAGTTGAAGGAGTTGACTTTGATGAAACCTATGCTCTTGTAGCTACACTTAAAGCTATATGCCTTTTACTTAGCATATCATGTATTAGAAAATTCAAGCTTTATCAAATGGATGTTAAAAGTTCCTTTTTAAATGGGTACTTAAATGAAGAAGTATATGTGGCACAACCTAAGGGTTTTATTGATCCAATTTATCCTCAATATGTTTATAAACTAAATAAAACTTTATATTGGATCAAACAAGCCCCCAGGGCTTGGTATGAACGATCACTATCTATCTTAGTCACAAAGGATACTCTACGGGAGGTGCTGACAAGACTCTATTTATTAATAAATCTGACAAGGATAAGATTGTTGCACAAATATATGTTGACGATATCATATTTGGTGGATTTCAAGAAGAGTTAG

Protein sequence

MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGVDFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIYPQYVYKLNKTLYWIKQAPRAWYERSLSILVTKDTLREVLTRLYLLINLTRIRLLHKYMLTISYLVDFKKS

Homology

[Close]

BLAST of Cmc02g0043991 vs. NCBI nr
Match: KAA0037650.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 2.9e-59
Identity = 123/174 (70.69%), Postives = 142/174 (81.61%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+RNN+WT+VPKPD AN++GTKWI KNKT+E  SI +NKARL+AQGY+QVEGV
Sbjct: 130 MQEELLQFKRNNVWTMVPKPDGANVIGTKWIFKNKTDESGSIIRNKARLIAQGYAQVEGV 189

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDET+ALVA L+AI LLLSISC RKFKL++MDVKS+FLNGYLNEEVYVAQPKGF+D  +
Sbjct: 190 DFDETFALVARLEAIRLLLSISCFRKFKLFRMDVKSAFLNGYLNEEVYVAQPKGFVDSEF 249

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSILVTKDTLREVLTRLYLLINLTRIRLL 175
           PQYVYKLNK LY +KQAPRAWYER    L  +   R    R  L IN T   L+
Sbjct: 250 PQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETERT-LFINRTSTDLI 302

[Close]

BLAST of Cmc02g0043991 vs. NCBI nr
Match: TYJ98295.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58
Identity = 115/149 (77.18%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+ NN+WTLVPKPD ANI+GTKWI KNKT+E  S+ +NKA LVAQGY+QVEGV
Sbjct: 442 MQEELLQFKHNNVWTLVPKPDGANIIGTKWIFKNKTDESGSVVRNKACLVAQGYAQVEGV 501

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDET+A VA L+AI LLL ISC RKFKL+QMDVKS+FLNGYLNEEVYVAQPKGFID  +
Sbjct: 502 DFDETFAPVARLEAIRLLLRISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQPKGFIDSEF 561

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSIL 150
           PQYVYK+NK LY +KQAPRAWYER +  L
Sbjct: 562 PQYVYKINKALYGLKQAPRAWYERLIIYL 590

[Close]

BLAST of Cmc02g0043991 vs. NCBI nr
Match: KAA0058253.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56
Identity = 107/141 (75.89%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELL F+RNN+WTLVPKPD+ANI+GTKWI KNK +E   +T+NKARLVAQGY+Q+EGV
Sbjct: 131 MQEELLPFKRNNVWTLVPKPDEANIIGTKWIFKNKIDESGCVTRNKARLVAQGYAQIEGV 190

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDET+A VA L+AICLLL ISCIRKFK YQMDVK +FLNGYLNEE+YVAQPKGF+D  +
Sbjct: 191 DFDETFAPVARLEAICLLLGISCIRKFKFYQMDVKRAFLNGYLNEELYVAQPKGFVDSKF 250

Query: 121 PQYVYKLNKTLYWIKQAPRAW 142
           PQ+VYK+NK LY +KQAP+AW
Sbjct: 251 PQHVYKINKALYVLKQAPKAW 271

[Close]

BLAST of Cmc02g0043991 vs. NCBI nr
Match: KAA0035705.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 3.9e-56
Identity = 119/174 (68.39%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+RN++WTLVPKPD ANI+GTKWI +NKT+E   + +N+ARLVAQGY+QVEGV
Sbjct: 80  MQEELLQFKRNDVWTLVPKPDGANIIGTKWIFRNKTDESGCVIRNRARLVAQGYAQVEGV 139

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
            FDET+A VA L+AI LLLS+S  RKFKLYQMD+KS+FLNGYLNEEVYVAQPKGFID  +
Sbjct: 140 GFDETFAPVARLEAILLLLSVSYFRKFKLYQMDIKSAFLNGYLNEEVYVAQPKGFIDSEF 199

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSILVTKDTLREVLTRLYLLINLTRIRLL 175
           PQYVYKLNK LY +KQAPRAWYE  L++ + K    +  T   L IN T I L+
Sbjct: 200 PQYVYKLNKALYGLKQAPRAWYE-CLTMYLGKKGYSKGETDKTLFINKTNIDLI 252

[Close]

BLAST of Cmc02g0043991 vs. NCBI nr
Match: KAA0042206.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26777.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-55
Identity = 109/144 (75.69%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+RNN+WTLVPKPD ANI+GTKWI KNKT+E  S+ +N+ARLVAQGY+QV+GV
Sbjct: 767 MQEELLQFKRNNIWTLVPKPDVANIIGTKWIFKNKTDESESVIRNEARLVAQGYAQVKGV 826

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DF++T+A VA L+AI LLLSISC RKFKL+QMDVKS+FLNGYLNEEVYVAQ K F+D  +
Sbjct: 827 DFNKTFAPVARLEAIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 886

Query: 121 PQYVYKLNKTLYWIKQAPRAWYER 145
           PQYVYK NK LY +KQAPRAWYE+
Sbjct: 887 PQYVYKQNKALYGLKQAPRAWYEQ 910

[Close]

BLAST of Cmc02g0043991 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 11   NNLWTLV-PKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGVDFDETYALV 70
            N+ W LV P P    IVG +WI   K N   S+ + KARLVA+GY+Q  G+D+ ET++ V
Sbjct: 982  NHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1041

Query: 71   ATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIYPQYVYKLNK 130
                +I ++L ++  R + + Q+DV ++FL G L ++VY++QP GFID   P YV KL K
Sbjct: 1042 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRK 1101

Query: 131  TLYWIKQAPRAWYERSLSILVTKDTLREVL-TRLYLL 166
             LY +KQAPRAWY    + L+T   +  V  T L++L
Sbjct: 1102 ALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVL 1138

[Close]

BLAST of Cmc02g0043991 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-26
Identity = 71/188 (37.77%), Postives = 109/188 (57.98%), Query Frame = 0


Query: 11   NNLWTLV-PKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGVDFDETYALV 70
            N+ W LV P P    IVG +WI   K N   S+ + KARLVA+GY+Q  G+D+ ET++ V
Sbjct: 965  NHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPV 1024

Query: 71   ATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIYPQYVYKLNK 130
                +I ++L ++  R + + Q+DV ++FL G L +EVY++QP GF+D   P YV +L K
Sbjct: 1025 IKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRK 1084

Query: 131  TLYWIKQAPRAWYERSLSILVT-------KDTLREVLTR----LYLLINLTRIRLLHKYM 187
             +Y +KQAPRAWY    + L+T        DT   VL R    +Y+L+ +  I +     
Sbjct: 1085 AIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDT 1144

[Close]

BLAST of Cmc02g0043991 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-24
Identity = 58/140 (41.43%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 4    ELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGVDFD 63
            EL   + NN WT+  +P+  NIV ++W+   K NE  +  + KARLVA+G++Q   +D++
Sbjct: 913  ELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYE 972

Query: 64   ETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIYPQY 123
            ET+A VA + +   +LS+      K++QMDVK++FLNG L EE+Y+  P+G         
Sbjct: 973  ETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDN 1032

Query: 124  VYKLNKTLYWIKQAPRAWYE 144
            V KLNK +Y +KQA R W+E
Sbjct: 1033 VCKLNKAIYGLKQAARCWFE 1050

[Close]

BLAST of Cmc02g0043991 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-24
Identity = 60/156 (38.46%), Postives = 95/156 (60.90%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEE+   Q+N  + LV  P     +  KW+ K K +    + + KARLV +G+ Q +G+
Sbjct: 830 MQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGI 889

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDE ++ V  + +I  +LS++     ++ Q+DVK++FL+G L EE+Y+ QP+GF     
Sbjct: 890 DFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGK 949

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSILVTKDTLR 157
              V KLNK+LY +KQAPR WY +  S + ++  L+
Sbjct: 950 KHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLK 985

[Close]

BLAST of Cmc02g0043991 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEEL    RN  W LVP P   NI+G KW+ K K +   ++ + KARLVA+G+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFDETYALVATLKAICLLLSIS 83
            F ETY+ V     I  +L+++
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc02g0043991 vs. ExPASy TrEMBL
Match: A0A5A7T2Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00330 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.4e-59
Identity = 123/174 (70.69%), Postives = 142/174 (81.61%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+RNN+WT+VPKPD AN++GTKWI KNKT+E  SI +NKARL+AQGY+QVEGV
Sbjct: 130 MQEELLQFKRNNVWTMVPKPDGANVIGTKWIFKNKTDESGSIIRNKARLIAQGYAQVEGV 189

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDET+ALVA L+AI LLLSISC RKFKL++MDVKS+FLNGYLNEEVYVAQPKGF+D  +
Sbjct: 190 DFDETFALVARLEAIRLLLSISCFRKFKLFRMDVKSAFLNGYLNEEVYVAQPKGFVDSEF 249

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSILVTKDTLREVLTRLYLLINLTRIRLL 175
           PQYVYKLNK LY +KQAPRAWYER    L  +   R    R  L IN T   L+
Sbjct: 250 PQYVYKLNKALYGLKQAPRAWYERLTMYLGERGYSRGETERT-LFINRTSTDLI 302

[Close]

BLAST of Cmc02g0043991 vs. ExPASy TrEMBL
Match: A0A5D3BIP9 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00070 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 115/149 (77.18%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+ NN+WTLVPKPD ANI+GTKWI KNKT+E  S+ +NKA LVAQGY+QVEGV
Sbjct: 442 MQEELLQFKHNNVWTLVPKPDGANIIGTKWIFKNKTDESGSVVRNKACLVAQGYAQVEGV 501

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDET+A VA L+AI LLL ISC RKFKL+QMDVKS+FLNGYLNEEVYVAQPKGFID  +
Sbjct: 502 DFDETFAPVARLEAIRLLLRISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQPKGFIDSEF 561

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSIL 150
           PQYVYK+NK LY +KQAPRAWYER +  L
Sbjct: 562 PQYVYKINKALYGLKQAPRAWYERLIIYL 590

[Close]

BLAST of Cmc02g0043991 vs. ExPASy TrEMBL
Match: A0A5A7UQV4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005780 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.6e-57
Identity = 107/141 (75.89%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELL F+RNN+WTLVPKPD+ANI+GTKWI KNK +E   +T+NKARLVAQGY+Q+EGV
Sbjct: 131 MQEELLPFKRNNVWTLVPKPDEANIIGTKWIFKNKIDESGCVTRNKARLVAQGYAQIEGV 190

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DFDET+A VA L+AICLLL ISCIRKFK YQMDVK +FLNGYLNEE+YVAQPKGF+D  +
Sbjct: 191 DFDETFAPVARLEAICLLLGISCIRKFKFYQMDVKRAFLNGYLNEELYVAQPKGFVDSKF 250

Query: 121 PQYVYKLNKTLYWIKQAPRAW 142
           PQ+VYK+NK LY +KQAP+AW
Sbjct: 251 PQHVYKINKALYVLKQAPKAW 271

[Close]

BLAST of Cmc02g0043991 vs. ExPASy TrEMBL
Match: A0A5A7T2M1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00360 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.9e-56
Identity = 119/174 (68.39%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+RN++WTLVPKPD ANI+GTKWI +NKT+E   + +N+ARLVAQGY+QVEGV
Sbjct: 80  MQEELLQFKRNDVWTLVPKPDGANIIGTKWIFRNKTDESGCVIRNRARLVAQGYAQVEGV 139

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
            FDET+A VA L+AI LLLS+S  RKFKLYQMD+KS+FLNGYLNEEVYVAQPKGFID  +
Sbjct: 140 GFDETFAPVARLEAILLLLSVSYFRKFKLYQMDIKSAFLNGYLNEEVYVAQPKGFIDSEF 199

Query: 121 PQYVYKLNKTLYWIKQAPRAWYERSLSILVTKDTLREVLTRLYLLINLTRIRLL 175
           PQYVYKLNK LY +KQAPRAWYE  L++ + K    +  T   L IN T I L+
Sbjct: 200 PQYVYKLNKALYGLKQAPRAWYE-CLTMYLGKKGYSKGETDKTLFINKTNIDLI 252

[Close]

BLAST of Cmc02g0043991 vs. ExPASy TrEMBL
Match: A0A5D3DSN1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00770 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 7.3e-56
Identity = 109/144 (75.69%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEELLQF+RNN+WTLVPKPD ANI+GTKWI KNKT+E  S+ +N+ARLVAQGY+QV+GV
Sbjct: 767 MQEELLQFKRNNIWTLVPKPDVANIIGTKWIFKNKTDESESVIRNEARLVAQGYAQVKGV 826

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFIDPIY 120
           DF++T+A VA L+AI LLLSISC RKFKL+QMDVKS+FLNGYLNEEVYVAQ K F+D  +
Sbjct: 827 DFNKTFAPVARLEAIRLLLSISCFRKFKLFQMDVKSAFLNGYLNEEVYVAQLKRFVDSEF 886

Query: 121 PQYVYKLNKTLYWIKQAPRAWYER 145
           PQYVYK NK LY +KQAPRAWYE+
Sbjct: 887 PQYVYKQNKALYGLKQAPRAWYEQ 910

[Close]

BLAST of Cmc02g0043991 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-26
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           M +E+   +  + W +   P     +G KW+ K K N   +I + KARLVA+GY+Q EG+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 61  DFDETYALVATLKAICLLLSISCIRKFKLYQMDVKSSFLNGYLNEEVYVAQPKGFI---- 120
           DF ET++ V  L ++ L+L+IS I  F L+Q+D+ ++FLNG L+EE+Y+  P G+     
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221

Query: 121 DPIYPQYVYKLNKTLYWIKQAPRAWY 143
           D + P  V  L K++Y +KQA R W+
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWF 247

[Close]

BLAST of Cmc02g0043991 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MQEELLQFQRNNLWTLVPKPDKANIVGTKWILKNKTNEKRSITKNKARLVAQGYSQVEGV 60
           MQEEL    RN  W LVP P   NI+G KW+ K K +   ++ + KARLVA+G+ Q EG+
Sbjct: 44  MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103

Query: 61  DFDETYALVATLKAICLLLSIS 83
            F ETY+ V     I  +L+++
Sbjct: 104 YFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc02g0043991 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037650.1	2.9e-59	70.69	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [...	[more]
TYJ98295.1	2.5e-58	77.18	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0058253.1	1.4e-56	75.89	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0035705.1	3.9e-56	68.39	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [...	[more]
KAA0042206.1	1.5e-55	75.69	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26777.1 gag-pol polyprotein [...	[more]

BLAST of Cmc02g0043991 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.1e-27	43.31	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.4e-26	37.77	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.2e-24	41.43	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	3.2e-24	38.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	1.8e-11	43.90	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0043991 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2Q0	1.4e-59	70.69	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G...	[more]
A0A5D3BIP9	1.2e-58	77.18	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G...	[more]
A0A5A7UQV4	6.6e-57	75.89	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7T2M1	1.9e-56	68.39	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G...	[more]
A0A5D3DSN1	7.3e-56	75.69	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G...	[more]

BLAST of Cmc02g0043991 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.9e-26	39.73	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.3e-12	43.90	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 1..145
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..145
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 11..150 e-value: 3.1E-40 score: 138.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0043991.1	Cmc02g0043991.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding