Cmc02g0042531 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042531
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr02: 4355373 .. 4356098 (-)
RNA-Seq Expression	Cmc02g0042531
Synteny	Cmc02g0042531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACTCAACCACTACAGAAGTGATCGAAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCGCTTAGTAATGTTCTATATGTCCTTTCCCTACGTAGGAACCTAGTGTCTGGGAGCCTGTTGAATCAGGCAGGGCTTAAAATTATGCTGGAAGGTGACAAGGTTGTCCTCACCAAAAATGGAGAATTTTTCGGTAAGGGGTATCTGTCTAATGGTCTGTTTGTACTAAACACAATTTTCGTGAATGCGAATGCTTCTATTTCTGCCTACGTGATTGGATATGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAGCTTAAGAACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATTCCCTATTTGTGTAGAAAGTAAATTTCATAAGAAACCTTTCAAACCAGTTGAATATAGAAGTACTGATCTATTAGAATTAATTCACTCAAATCTAGCCGATTTTAAAAACACTACTAGTAAAGGTGGTAAAAACTACTATGTATCTTTTGTTGACGATTACTTTAAATTTACTAAGATATACTTAATAAAAACAAAAGATGAAGTTGGTAGTATGTTTTTAAAATTCAAAGCAGAATCTGAAAATCAGTTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTTTTAAGGACTTTTGA

mRNA sequence

ATGGGAAACTCAACCACTACAGAAGTGATCGAAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCGCTTAGTAATGTTCTATATGTCCTTTCCCTACGTAGGAACCTAGTGTCTGGGAGCCTGTTGAATCAGGCAGGGCTTAAAATTATGCTGGAAGGTGACAAGGTTGTCCTCACCAAAAATGGAGAATTTTTCGGTAAGGGGTATCTGTCTAATGGTCTGTTTGTACTAAACACAATTTTCGTGAATGCGAATGCTTCTATTTCTGCCTACGTGATTGGATATGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAGCTTAAGAACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATTCCCTATTTGTGTAGAAAGTAAATTTCATAAGAAACCTTTCAAACCAGTTGAATATAGAAGTACTGATCTATTAGAATTAATTCACTCAAATCTAGCCGATTTTAAAAACACTACTAGTAAAGGTGGTAAAAACTACTATGTATCTTTTGTTGACGATTACTTTAAATTTACTAAGATATACTTAATAAAAACAAAAGATGAAGTTGGTAGTATGTTTTTAAAATTCAAAGCAGAATCTGAAAATCAGTTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTTTTAAGGACTTTTGA

Coding sequence (CDS)

ATGGGAAACTCAACCACTACAGAAGTGATCGAAAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGCAAAACTTTATCGCTTAGTAATGTTCTATATGTCCTTTCCCTACGTAGGAACCTAGTGTCTGGGAGCCTGTTGAATCAGGCAGGGCTTAAAATTATGCTGGAAGGTGACAAGGTTGTCCTCACCAAAAATGGAGAATTTTTCGGTAAGGGGTATCTGTCTAATGGTCTGTTTGTACTAAACACAATTTTCGTGAATGCGAATGCTTCTATTTCTGCCTACGTGATTGGATATGTTAACTTATGGCATGGTAGACTAGGACATGTGAACTTTGCATCAATTAGGAAGCTTAAGAACTTGAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATTCCCTATTTGTGTAGAAAGTAAATTTCATAAGAAACCTTTCAAACCAGTTGAATATAGAAGTACTGATCTATTAGAATTAATTCACTCAAATCTAGCCGATTTTAAAAACACTACTAGTAAAGGTGGTAAAAACTACTATGTATCTTTTGTTGACGATTACTTTAAATTTACTAAGATATACTTAATAAAAACAAAAGATGAAGTTGGTAGTATGTTTTTAAAATTCAAAGCAGAATCTGAAAATCAGTTAGGAAAAAAGATAAAAAGATTAAGATCAGATAGAGGTGGTGAGTATTCTGATAAAACTTTTAAGGACTTTTGA

Protein sequence

MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKVVLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKNLRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNYYVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKDF

Homology

[Close]

BLAST of Cmc02g0042531 vs. NCBI nr
Match: TYK29957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.9e-110
Identity = 211/241 (87.55%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T EVI K KVILKLTSGKTLSLSNVLYV SLRRNLVSG+LLN+A LKI+LEGDKV
Sbjct: 55  MGNSATAEVIGKRKVILKLTSGKTLSLSNVLYVPSLRRNLVSGNLLNRARLKIVLEGDKV 114

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNGEF GKGYLSNGLFVLNTI +N NAS S YVI +VNLWHGRLGHVNFASIRKLK+
Sbjct: 115 VLTKNGEFVGKGYLSNGLFVLNTISMNVNASSSTYVIEFVNLWHGRLGHVNFASIRKLKD 174

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTS+SHETGK PICVESKFHKKPFKPVE R+TDLLELIHS+LADFK TTS+GGKNY
Sbjct: 175 LRLINTSDSHETGKCPICVESKFHKKPFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 234

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIK KDE GSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKT KD
Sbjct: 235 YVSFVDDYSRFTKIYLIKIKDEAGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKD 294

Query: 241 F 242
           F
Sbjct: 295 F 295

[Close]

BLAST of Cmc02g0042531 vs. NCBI nr
Match: KAA0053084.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 407.5 bits (1046), Expect = 7.9e-110
Identity = 211/241 (87.55%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T EVI K KVILKLTSGKTLSLSNVLYV SLRRNLVSG+LLN+A LKI+LEGDKV
Sbjct: 70  MGNSATAEVIGKRKVILKLTSGKTLSLSNVLYVPSLRRNLVSGNLLNRARLKIVLEGDKV 129

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNGEF GKGYLSNGLFVLNTI +N NAS S YVI +VNLWHGRLGHVNFASIRKLK+
Sbjct: 130 VLTKNGEFVGKGYLSNGLFVLNTISMNVNASSSTYVIEFVNLWHGRLGHVNFASIRKLKD 189

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTS+SHETGK PICVESKFHKKPFKPVE R+TDLLELIHS+LADFK TTS+GGKNY
Sbjct: 190 LRLINTSDSHETGKCPICVESKFHKKPFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 249

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIK KDE GSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKT KD
Sbjct: 250 YVSFVDDYSRFTKIYLIKIKDEAGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKD 309

Query: 241 F 242
           F
Sbjct: 310 F 310

[Close]

BLAST of Cmc02g0042531 vs. NCBI nr
Match: KAA0054462.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.0 bits (1029), Expect = 7.4e-108
Identity = 208/241 (86.31%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNSTT  VI KGKVILKLTSGKTLSLSNVLYV SLRRNLVS SLLN+AGL I+LEGDKV
Sbjct: 296 MGNSTTAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSRSLLNRAGLIIVLEGDKV 355

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNGEF GKGYLSNGLFVLNTI +NANAS SAY+I   NLWHGRLGHVNFASIRKLK+
Sbjct: 356 VLTKNGEFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 415

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTSE+HETGK PICVESKFHKKPFKPVEYR+T+LLELIHS+LADF+ TTS+GGKNY
Sbjct: 416 LRLINTSETHETGKCPICVESKFHKKPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNY 475

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIKTK+E   MFLKFKAESENQLGKKIKRLRSDRGGEYSDKT K+
Sbjct: 476 YVSFVDDYSRFTKIYLIKTKNEAVGMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 535

Query: 241 F 242
           F
Sbjct: 536 F 536

[Close]

BLAST of Cmc02g0042531 vs. NCBI nr
Match: KAA0044881.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-107
Identity = 206/241 (85.48%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T  VI KGKVILKLTSGKTLSL+NVLYV SLRRNLVSGSLLN+ GLKI+LEGDKV
Sbjct: 168 MGNSATAGVIRKGKVILKLTSGKTLSLNNVLYVPSLRRNLVSGSLLNRVGLKIVLEGDKV 227

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNG+F GKGYLSNGLFVLNTI +NANAS SAY+I   NLWHGRLGHVNFASIRKLK+
Sbjct: 228 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 287

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTSESHE+GK PICVESKFHKK FKPVEYR+T+LLELIHS+LADF+ TTSKGGKNY
Sbjct: 288 LRLINTSESHESGKCPICVESKFHKKSFKPVEYRTTELLELIHSDLADFRTTTSKGGKNY 347

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIKTK+E  SMFLKFKAESENQLGK+IKRLRSDRGGEYSDKT K+
Sbjct: 348 YVSFVDDYSRFTKIYLIKTKNEAVSMFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 407

Query: 241 F 242
           F
Sbjct: 408 F 408

[Close]

BLAST of Cmc02g0042531 vs. NCBI nr
Match: KAA0044944.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 399.4 bits (1025), Expect = 2.1e-107
Identity = 204/241 (84.65%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T  VI KGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLN+AGLKI+LEGDKV
Sbjct: 122 MGNSATVGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 181

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNG+F GKGYLSNGLFVLNTI +NANAS SAY+I   NLWHGRLGHVNFASIRKLK+
Sbjct: 182 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 241

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTSE+HETGK P+C+ESKFHKKPFKPVEYR T+LLELIHSNLADF+ T S+GGKNY
Sbjct: 242 LRLINTSETHETGKCPVCIESKFHKKPFKPVEYRITELLELIHSNLADFRTTASRGGKNY 301

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +F KIYLIKTK+E  SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKT K+
Sbjct: 302 YVSFVDDYSRFNKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 361

Query: 241 F 242
           F
Sbjct: 362 F 362

[Close]

BLAST of Cmc02g0042531 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.4e-30
Identity = 78/241 (32.37%), Postives = 130/241 (53.94%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGN++ +++   G + +K   G TL L +V +V  LR NL+SG  L++ G +      K 
Sbjct: 324 MGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKW 383

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
            LTK      KG     L+  N        + +   I  V+LWH R+GH++   ++ L  
Sbjct: 384 RLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEIS-VDLWHKRMGHMSEKGLQILAK 443

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
             LI+ ++         C+  K H+  F+    R  ++L+L++S++       S GG  Y
Sbjct: 444 KSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKY 503

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           +V+F+DD  +   +Y++KTKD+V  +F KF A  E + G+K+KRLRSD GGEY+ + F++
Sbjct: 504 FVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEE 563

Query: 241 F 242
           +
Sbjct: 564 Y 563

[Close]

BLAST of Cmc02g0042531 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-15
Identity = 66/234 (28.21%), Postives = 108/234 (46.15%), Query Frame = 0


Query: 16  ILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKVVLTKNGEFFGKGYLS 75
           I++L +   ++L +VL+      NL+S   L +AG+ I  +   V ++KNG    K    
Sbjct: 334 IVRLRNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVK---- 393

Query: 76  NGLFVLNTIFVNANA-SISAYVIGYVNLWHGRLGHVNFASIRKLKNLRLINTSESHETGK 135
           N   + N   +N  A SI+A       LWH R GH++   + ++K   + +        +
Sbjct: 394 NSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE 453

Query: 136 FPI-----CVESKFHKKPFKPVEYRS--TDLLELIHSNLADFKNTTSKGGKNYYVSFVDD 195
                   C+  K  + PFK ++ ++     L ++HS++       +   KNY+V FVD 
Sbjct: 454 LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQ 513

Query: 196 YFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKDF 242
           +  +   YLIK K +V SMF  F A+SE     K+  L  D G EY     + F
Sbjct: 514 FTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQF 563

[Close]

BLAST of Cmc02g0042531 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-12
Identity = 69/240 (28.75%), Postives = 114/240 (47.50%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLL---NQAGLKIMLEG 60
           + + +T  +   G   L  TS ++L L+ VLYV ++ +NL+S   L   N+  ++     
Sbjct: 341 IADGSTIPITHTGSASLP-TSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPAS 400

Query: 61  DKVVLTKNGEFFGKGYLSNGLF---VLNTIFVNANASISAYVIGYVNLWHGRLGHVNFAS 120
            +V     G    +G   + L+   + ++  V+  AS  +      + WH RLGH + A 
Sbjct: 401 FQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSKATH--SSWHSRLGHPSLAI 460

Query: 121 IRK-LKNLRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTT 180
           +   + N  L   + SH+      C  +K HK PF      S+  LE I+S++       
Sbjct: 461 LNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPIL 520

Query: 181 SKGGKNYYVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEY 234
           S     YYV FVD + ++T +Y +K K +V   F+ FK+  EN+   +I  L SD GGE+
Sbjct: 521 SIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF 576

[Close]

BLAST of Cmc02g0042531 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-11
Identity = 67/240 (27.92%), Postives = 111/240 (46.25%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLL---NQAGLKIMLEG 60
           + + +T  +   G   L  T  + L+L N+LYV ++ +NL+S   L   N   ++     
Sbjct: 362 VADGSTIPISHTGSTSLS-TKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPAS 421

Query: 61  DKVVLTKNGEFFGKGYLSNGLF---VLNTIFVNANASISAYVIGYVNLWHGRLGHVNFAS 120
            +V     G    +G   + L+   + ++  V+  AS S+      + WH RLGH   + 
Sbjct: 422 FQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSSKATH--SSWHARLGHPAPSI 481

Query: 121 IRK-LKNLRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTT 180
           +   + N  L   + SH+      C+ +K +K PF      ST  LE I+S++       
Sbjct: 482 LNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPIL 541

Query: 181 SKGGKNYYVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEY 234
           S     YYV FVD + ++T +Y +K K +V   F+ FK   EN+   +I    SD GGE+
Sbjct: 542 SHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF 597

[Close]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL
Match: A0A5A7UCV4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold778G00080 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110
Identity = 211/241 (87.55%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T EVI K KVILKLTSGKTLSLSNVLYV SLRRNLVSG+LLN+A LKI+LEGDKV
Sbjct: 70  MGNSATAEVIGKRKVILKLTSGKTLSLSNVLYVPSLRRNLVSGNLLNRARLKIVLEGDKV 129

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNGEF GKGYLSNGLFVLNTI +N NAS S YVI +VNLWHGRLGHVNFASIRKLK+
Sbjct: 130 VLTKNGEFVGKGYLSNGLFVLNTISMNVNASSSTYVIEFVNLWHGRLGHVNFASIRKLKD 189

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTS+SHETGK PICVESKFHKKPFKPVE R+TDLLELIHS+LADFK TTS+GGKNY
Sbjct: 190 LRLINTSDSHETGKCPICVESKFHKKPFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 249

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIK KDE GSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKT KD
Sbjct: 250 YVSFVDDYSRFTKIYLIKIKDEAGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKD 309

Query: 241 F 242
           F
Sbjct: 310 F 310

[Close]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL
Match: A0A5D3E1H3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold588G00220 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.8e-110
Identity = 211/241 (87.55%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T EVI K KVILKLTSGKTLSLSNVLYV SLRRNLVSG+LLN+A LKI+LEGDKV
Sbjct: 55  MGNSATAEVIGKRKVILKLTSGKTLSLSNVLYVPSLRRNLVSGNLLNRARLKIVLEGDKV 114

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNGEF GKGYLSNGLFVLNTI +N NAS S YVI +VNLWHGRLGHVNFASIRKLK+
Sbjct: 115 VLTKNGEFVGKGYLSNGLFVLNTISMNVNASSSTYVIEFVNLWHGRLGHVNFASIRKLKD 174

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTS+SHETGK PICVESKFHKKPFKPVE R+TDLLELIHS+LADFK TTS+GGKNY
Sbjct: 175 LRLINTSDSHETGKCPICVESKFHKKPFKPVESRTTDLLELIHSDLADFKTTTSRGGKNY 234

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIK KDE GSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKT KD
Sbjct: 235 YVSFVDDYSRFTKIYLIKIKDEAGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKD 294

Query: 241 F 242
           F
Sbjct: 295 F 295

[Close]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL
Match: A0A5A7UFB4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002340 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.6e-108
Identity = 208/241 (86.31%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNSTT  VI KGKVILKLTSGKTLSLSNVLYV SLRRNLVS SLLN+AGL I+LEGDKV
Sbjct: 296 MGNSTTAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSRSLLNRAGLIIVLEGDKV 355

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNGEF GKGYLSNGLFVLNTI +NANAS SAY+I   NLWHGRLGHVNFASIRKLK+
Sbjct: 356 VLTKNGEFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 415

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTSE+HETGK PICVESKFHKKPFKPVEYR+T+LLELIHS+LADF+ TTS+GGKNY
Sbjct: 416 LRLINTSETHETGKCPICVESKFHKKPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNY 475

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIKTK+E   MFLKFKAESENQLGKKIKRLRSDRGGEYSDKT K+
Sbjct: 476 YVSFVDDYSRFTKIYLIKTKNEAVGMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTLKE 535

Query: 241 F 242
           F
Sbjct: 536 F 536

[Close]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL
Match: A0A5A7TTN4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001740 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 6.1e-108
Identity = 206/241 (85.48%), Postives = 222/241 (92.12%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T  VI KGKVILKLTSGKTLSL+NVLYV SLRRNLVSGSLLN+ GLKI+LEGDKV
Sbjct: 168 MGNSATAGVIRKGKVILKLTSGKTLSLNNVLYVPSLRRNLVSGSLLNRVGLKIVLEGDKV 227

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNG+F GKGYLSNGLFVLNTI +NANAS SAY+I   NLWHGRLGHVNFASIRKLK+
Sbjct: 228 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 287

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTSESHE+GK PICVESKFHKK FKPVEYR+T+LLELIHS+LADF+ TTSKGGKNY
Sbjct: 288 LRLINTSESHESGKCPICVESKFHKKSFKPVEYRTTELLELIHSDLADFRTTTSKGGKNY 347

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +FTKIYLIKTK+E  SMFLKFKAESENQLGK+IKRLRSDRGGEYSDKT K+
Sbjct: 348 YVSFVDDYSRFTKIYLIKTKNEAVSMFLKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 407

Query: 241 F 242
           F
Sbjct: 408 F 408

[Close]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL
Match: A0A5A7TP82 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002450 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.0e-107
Identity = 204/241 (84.65%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MGNSTTTEVIEKGKVILKLTSGKTLSLSNVLYVLSLRRNLVSGSLLNQAGLKIMLEGDKV 60
           MGNS T  VI KGKVILKLTSGKTLSLSNVLYV SLRRNLVSGSLLN+AGLKI+LEGDKV
Sbjct: 122 MGNSATVGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKV 181

Query: 61  VLTKNGEFFGKGYLSNGLFVLNTIFVNANASISAYVIGYVNLWHGRLGHVNFASIRKLKN 120
           VLTKNG+F GKGYLSNGLFVLNTI +NANAS SAY+I   NLWHGRLGHVNFASIRKLK+
Sbjct: 182 VLTKNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLGHVNFASIRKLKD 241

Query: 121 LRLINTSESHETGKFPICVESKFHKKPFKPVEYRSTDLLELIHSNLADFKNTTSKGGKNY 180
           LRLINTSE+HETGK P+C+ESKFHKKPFKPVEYR T+LLELIHSNLADF+ T S+GGKNY
Sbjct: 242 LRLINTSETHETGKCPVCIESKFHKKPFKPVEYRITELLELIHSNLADFRTTASRGGKNY 301

Query: 181 YVSFVDDYFKFTKIYLIKTKDEVGSMFLKFKAESENQLGKKIKRLRSDRGGEYSDKTFKD 240
           YVSFVDDY +F KIYLIKTK+E  SMF+KFKAESENQLGK+IKRLRSDRGGEYSDKT K+
Sbjct: 302 YVSFVDDYSRFNKIYLIKTKNEAVSMFVKFKAESENQLGKRIKRLRSDRGGEYSDKTLKE 361

Query: 241 F 242
           F
Sbjct: 362 F 362

The following BLAST results are available for this feature:

BLAST of Cmc02g0042531 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29957.1	7.9e-110	87.55	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053084.1	7.9e-110	87.55	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054462.1	7.4e-108	86.31	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044881.1	1.3e-107	85.48	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044944.1	2.1e-107	84.65	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0042531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.4e-30	32.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.9e-15	28.21	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.6e-12	28.75	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.1e-11	27.92	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCV4	3.8e-110	87.55	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3E1H3	3.8e-110	87.55	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UFB4	3.6e-108	86.31	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TTN4	6.1e-108	85.48	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TP82	1.0e-107	84.65	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc02g0042531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 78..142 e-value: 8.1E-8 score: 32.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 151..241 e-value: 1.7E-9 score: 39.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 97..241
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 97..241
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 146..241 score: 11.312799
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 155..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0042531.1	Cmc02g0042531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding