Cmc02g0042521 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042521
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr02: 4354209 .. 4355279 (-)
RNA-Seq Expression	Cmc02g0042521
Synteny	Cmc02g0042521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCATGTTATTAAGCTCCGGTCTATCTGATAATATGTGTGGGGAAGCTGTGTTGTCTGCGTGTTTTGTTCTTGATAGGTTAATCCACAAAAGGCTAGACAAAACTCCCTACGAACTCTGGAAAGGACATGTACCAAATATTTTCTACTTAAAGGTCAGGGAATGCTTGACAAAGGTACCATTTCCTACATTGAAGAAATCTACAGTAGGATCTAAAACCTTTGACTGTATATTTATCGGGTATGCTCAAAATAGTGTTGCATATAAGTTTATGTGTTTAAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTTCGTTAAAACAATCGTTGCCTGTTCCTGGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCGAACTTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAATTGAGAAATGTTTCGGTCCAGATTTCCTAAGCACCTTTATAGTGGAAAGGCGCGATGAAATTGACTGTAACTTCACAAACTTGTTTTTAATAGATGAGGATCCTAAAACTTACCACGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAAAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCAAAAATGGGACTTAGTAGACCTTCCTATGAGAAACAAGCCAATTAGGTGTAAGTGGAGCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTTGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGTCTTGATTGCATTAGCAGCCATACATAGCCTTCTTATTCACCAAATGGATGTAAAAGCTGCCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTCCTGGCCAAGAAAACAAAGTGTGTAAACTAAGAAAATCCCTATATGGTCTCAAGCAAGCTCTCAAGTAG

mRNA sequence

ATGAATGTCATGTTATTAAGCTCCGGTCTATCTGATAATATGTGTGGGGAAGCTGTGTTGTCTGCGTGTTTTGTTCTTGATAGGTTAATCCACAAAAGGCTAGACAAAACTCCCTACGAACTCTGGAAAGGACATGTACCAAATATTTTCTACTTAAAGGTCAGGGAATGCTTGACAAAGGTACCATTTCCTACATTGAAGAAATCTACAGTAGGATCTAAAACCTTTGACTGTATATTTATCGGGTATGCTCAAAATAGTGTTGCATATAAGTTTATGTGTTTAAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTTCGTTAAAACAATCGTTGCCTGTTCCTGGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCGAACTTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAATTGAGAAATGTTTCGGTCCAGATTTCCTAAGCACCTTTATAGTGGAAAGGCGCGATGAAATTGACTGTAACTTCACAAACTTGTTTTTAATAGATGAGGATCCTAAAACTTACCACGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAAAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCAAAAATGGGACTTAGTAGACCTTCCTATGAGAAACAAGCCAATTAGGTGTAAGTGGAGCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTTGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGTCTTGATTGCATTAGCAGCCATACATAGCCTTCTTATTCACCAAATGGATGTAAAAGCTGCCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTCCTGGCCAAGAAAACAAAGTGTGTAAACTAAGAAAATCCCTATATGGTCTCAAGCAAGCTCTCAAGTAG

Coding sequence (CDS)

ATGAATGTCATGTTATTAAGCTCCGGTCTATCTGATAATATGTGTGGGGAAGCTGTGTTGTCTGCGTGTTTTGTTCTTGATAGGTTAATCCACAAAAGGCTAGACAAAACTCCCTACGAACTCTGGAAAGGACATGTACCAAATATTTTCTACTTAAAGGTCAGGGAATGCTTGACAAAGGTACCATTTCCTACATTGAAGAAATCTACAGTAGGATCTAAAACCTTTGACTGTATATTTATCGGGTATGCTCAAAATAGTGTTGCATATAAGTTTATGTGTTTAAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTTCGTTAAAACAATCGTTGCCTGTTCCTGGCCTATCTAAAAGAATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCGAACTTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAATTGAGAAATGTTTCGGTCCAGATTTCCTAAGCACCTTTATAGTGGAAAGGCGCGATGAAATTGACTGTAACTTCACAAACTTGTTTTTAATAGATGAGGATCCTAAAACTTACCACGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAAAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCAAAAATGGGACTTAGTAGACCTTCCTATGAGAAACAAGCCAATTAGGTGTAAGTGGAGCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTTGTAGGGTATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGTCTTGATTGCATTAGCAGCCATACATAGCCTTCTTATTCACCAAATGGATGTAAAAGCTGCCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTCCTGGCCAAGAAAACAAAGTGTGTAAACTAAGAAAATCCCTATATGGTCTCAAGCAAGCTCTCAAGTAG

Protein sequence

MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTKVPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAAIHSLLIHQMDVKAAFLNGDLEEEIYMTQPEGFKIPGQENKVCKLRKSLYGLKQALK

Homology

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BLAST of Cmc02g0042521 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 613.2 bits (1580), Expect = 1.4e-171
Identity = 305/356 (85.67%), Postives = 318/356 (89.33%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLSDNM GEAVLSACF+L+R+ HKRLDKTPYELWKGH PN+ YLKV  CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VP P LKK+TVG KTFDCIFIGYAQNS AY+FMCLNDKTINESRDAEFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LS RMHDPE   IVSE PVSETV+T NL CELE RRSKRQR EK FGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEIDCNFTNLFLIDEDPKTY EALNSV+S MWK+AIKSELDSL MN  W+LVDLPM N
Sbjct: 819 RRDEIDCNFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAA 300
           KPIRCKW FKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALAA
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAA 938

Query: 301 IHSLLIHQMDVKAAFLNGDLEEEIYMTQPEGFKIPGQENKVCKLRKSLYGLKQALK 357
           IH+LLIHQMDVK AFLNG+LEEEIYMTQPEGFKI GQENKVCKLRKSLYGLKQA K
Sbjct: 939 IHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPK 991

[Close]

BLAST of Cmc02g0042521 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 508.8 bits (1309), Expect = 3.7e-140
Identity = 250/286 (87.41%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLSDN+ GE VLSACFVL+R+ HKRLDKTPYELWKGH PN+ YLKV  CL K
Sbjct: 367 MNAMLLSSGLSDNIWGEVVLSACFVLNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 426

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VPFP LKKSTVGSKTFDCIFIGYAQNSVAY+FMCLNDKTINESRDAEFFEHVFSLKQSL 
Sbjct: 427 VPFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFSLKQSLY 486

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LSKRMHDPEN SIVSET VSE VNTSNLRCELELRRSKRQR EK F PDFLSTFIVE
Sbjct: 487 APSLSKRMHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVE 546

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEID NFTNL+LIDEDPKTY E LNSVE SMWK+AIKSELDSLVMN  WDLVDLPM N
Sbjct: 547 RRDEIDFNFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGN 606

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 287
           KPIRC+W FKRKTKPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Sbjct: 607 KPIRCRWIFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc02g0042521 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 496.9 bits (1278), Expect = 1.5e-136
Identity = 245/293 (83.62%), Postives = 257/293 (87.71%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLSDNM GEAVLSACF+L+R+ HKRLDKTPYELWKGH PN+ YLKV  CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VP P LKK+TVG KTFDCIFIGYAQNS AY+FMCLNDKTINESRDAEFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LS RMHDPE   IVSE PVSE V+T NL CELE RRSKRQR EK FGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEIDCNFTNLFLI+ED KTY EALNSV+S MWK+AIKSELDSL MN  W+LVDLPM N
Sbjct: 819 RRDEIDCNFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR 294
           KPIRCKW FKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc02g0042521 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 485.3 bits (1248), Expect = 4.4e-133
Identity = 239/272 (87.87%), Postives = 246/272 (90.44%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLS+NM GEAVLSA FVL+R+ HKRLDKTPYELWKGH P + YLKV  CL K
Sbjct: 223 MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 282

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VPFP LKKSTVGSKTFDCIFI YAQNSVAY+FMC NDKTINESRDAEFFEHVF LKQSL 
Sbjct: 283 VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 342

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LSKRMHDPENPSIVSETPVSETVNTSNLRCELEL RSKRQR EK FGPDFLSTFIVE
Sbjct: 343 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 402

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEIDCNFTNL+LIDEDPKTY EALNSVESSMWK+AIKSELDSLVMN  WDLVDLPM N
Sbjct: 403 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 462

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYT 273
           KPIRCKW FKRKTKPNGSIERYK RLVVVGYT
Sbjct: 463 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc02g0042521 vs. NCBI nr
Match: TYK14234.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.9 bits (1195), Expect = 6.1e-127
Identity = 232/279 (83.15%), Postives = 246/279 (88.17%), Query Frame = 0


Query: 18  AVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTKVPFPTLKKSTVGSKTFD 77
           AVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECL KVPFPTLKKSTVGSKTFD
Sbjct: 136 AVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLAKVPFPTLKKSTVGSKTFD 195

Query: 78  CIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVPGLSKRMHDPENPSIV 137
           CIFIGYAQNS AYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVP LSKRMHDPENPSIV
Sbjct: 196 CIFIGYAQNSAAYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVPDLSKRMHDPENPSIV 255

Query: 138 SETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDE 197
           SETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDE
Sbjct: 256 SETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDE 315

Query: 198 DPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFK-----RK 257
           DPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIR +  F      +K
Sbjct: 316 DPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRLRTPFDASKHLKK 375

Query: 258 TKPNGSIERYKARLV-----VVGYTQKQGIDYFDTYSPV 287
            K + + +   A+++     ++ YT+       D+ +P+
Sbjct: 376 NKGDSASQPEYAKIIGSVMYLMNYTKPDIAYACDSQAPI 414

[Close]

BLAST of Cmc02g0042521 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 8.2e-50
Identity = 134/388 (34.54%), Postives = 197/388 (50.77%), Query Frame = 0


Query: 4   MLLSSGLSDNMCGEAVLSACFVLDRLIHKRLD-KTPYELWKGHVPNIFYLKVRECLTKVP 63
           ML  + L  +  GEAV +AC++++R     L  + P  +W     +  +LKV  C     
Sbjct: 599 MLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAH 658

Query: 64  FPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVP 123
            P  +++ +  K+  CIFIGY      Y+      K +  SRD      VF   +     
Sbjct: 659 VPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV-----VFRESEVRTAA 718

Query: 124 GLSKRMHDPENPSIV-----SETPVSETVNTSNLRCELE--------------------- 183
            +S+++ +   P+ V     S  P S    T  +  + E                     
Sbjct: 719 DMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEH 778

Query: 184 ----------LRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDEDPKTYHEAL 243
                     LRRS+R R+E    P   ST  V            L   D +P++  E L
Sbjct: 779 PTQGEEQHQPLRRSERPRVESRRYP---STEYV------------LISDDREPESLKEVL 838

Query: 244 NSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFKRKTKPNGSIERYKARL 303
           +  E +   KA++ E++SL  N  + LV+LP   +P++CKW FK K   +  + RYKARL
Sbjct: 839 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 898

Query: 304 VVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAAIHSLLIHQMDVKAAFLNGDLEEEIYM 355
           VV G+ QK+GID+ + +SPV K+T+IR +++LAA   L + Q+DVK AFL+GDLEEEIYM
Sbjct: 899 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 958

[Close]

BLAST of Cmc02g0042521 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.1e-33
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 196  DEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPI-RCKWSFKRKTK 255
            + +P+T   A+ +++   W+ A+ SE+++ + N  WDLV  P  +  I  C+W F +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 256  PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAAIHSLLIHQMDVKAA 315
             +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR+++ +A   S  I Q+DV  A
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 316  FLNGDLEEEIYMTQPEGFKIPGQENKVCKLRKSLYGLKQA 355
            FL G L +++YM+QP GF    + N VCKLRK+LYGLKQA
Sbjct: 1073 FLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQA 1109

[Close]

BLAST of Cmc02g0042521 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-32
Identity = 70/160 (43.75%), Postives = 107/160 (66.88%), Query Frame = 0


Query: 196  DEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPI-RCKWSFKRKTK 255
            + +P+T   A+ +++   W++A+ SE+++ + N  WDLV  P  +  I  C+W F +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 256  PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAAIHSLLIHQMDVKAA 315
             +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR+++ +A   S  I Q+DV  A
Sbjct: 996  SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1055

Query: 316  FLNGDLEEEIYMTQPEGFKIPGQENKVCKLRKSLYGLKQA 355
            FL G L +E+YM+QP GF    + + VC+LRK++YGLKQA
Sbjct: 1056 FLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQA 1092

[Close]

BLAST of Cmc02g0042521 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 9.5e-30
Identity = 87/261 (33.33%), Postives = 137/261 (52.49%), Query Frame = 0


Query: 96   NDKTINESRDAEFFEHVFSLKQSLPVPGLSKRMHDPENPSIVSETPVSETVNTSNLRCEL 155
            N   +NES+  +  +H+   K S    G      + E    + E  +     T N   E+
Sbjct: 800  NKYFLNESKKRKRDDHLNESKGS----GNPNESRESETAEHLKEIGIDNP--TKNDGIEI 859

Query: 156  ELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWK 215
              RRS+R + +    P           +++  N   +F  ++ P ++ E     + S W+
Sbjct: 860  INRRSERLKTK----PQISYNEEDNSLNKVVLNAHTIF--NDVPNSFDEIQYRDDKSSWE 919

Query: 216  KAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQ 275
            +AI +EL++  +N  W +   P     +  +W F  K    G+  RYKARLV  G+TQK 
Sbjct: 920  EAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKY 979

Query: 276  GIDYFDTYSPVTKITTIRVLIALAAIHSLLIHQMDVKAAFLNGDLEEEIYMTQPEGFKIP 335
             IDY +T++PV +I++ R +++L   ++L +HQMDVK AFLNG L+EEIYM  P+G  I 
Sbjct: 980  QIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--IS 1039

Query: 336  GQENKVCKLRKSLYGLKQALK 357
               + VCKL K++YGLKQA +
Sbjct: 1040 CNSDNVCKLNKAIYGLKQAAR 1046

[Close]

BLAST of Cmc02g0042521 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-14
Identity = 40/105 (38.10%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 195 IDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFKRKTK 254
           I ++PK+    + +++   W +A++ ELD+L  N+ W LV  P+    + CKW FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 255 PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALA 300
            +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc02g0042521 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 613.2 bits (1580), Expect = 6.8e-172
Identity = 305/356 (85.67%), Postives = 318/356 (89.33%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLSDNM GEAVLSACF+L+R+ HKRLDKTPYELWKGH PN+ YLKV  CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VP P LKK+TVG KTFDCIFIGYAQNS AY+FMCLNDKTINESRDAEFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LS RMHDPE   IVSE PVSETV+T NL CELE RRSKRQR EK FGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEIDCNFTNLFLIDEDPKTY EALNSV+S MWK+AIKSELDSL MN  W+LVDLPM N
Sbjct: 819 RRDEIDCNFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAA 300
           KPIRCKW FKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR LIALAA
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAA 938

Query: 301 IHSLLIHQMDVKAAFLNGDLEEEIYMTQPEGFKIPGQENKVCKLRKSLYGLKQALK 357
           IH+LLIHQMDVK AFLNG+LEEEIYMTQPEGFKI GQENKVCKLRKSLYGLKQA K
Sbjct: 939 IHNLLIHQMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPK 991

[Close]

BLAST of Cmc02g0042521 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.8e-140
Identity = 250/286 (87.41%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLSDN+ GE VLSACFVL+R+ HKRLDKTPYELWKGH PN+ YLKV  CL K
Sbjct: 367 MNAMLLSSGLSDNIWGEVVLSACFVLNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 426

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VPFP LKKSTVGSKTFDCIFIGYAQNSVAY+FMCLNDKTINESRDAEFFEHVFSLKQSL 
Sbjct: 427 VPFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFSLKQSLY 486

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LSKRMHDPEN SIVSET VSE VNTSNLRCELELRRSKRQR EK F PDFLSTFIVE
Sbjct: 487 APSLSKRMHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVE 546

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEID NFTNL+LIDEDPKTY E LNSVE SMWK+AIKSELDSLVMN  WDLVDLPM N
Sbjct: 547 RRDEIDFNFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGN 606

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPV 287
           KPIRC+W FKRKTKPNGS+ERYKARLVVVGYTQKQGIDYFDTYSPV
Sbjct: 607 KPIRCRWIFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc02g0042521 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 7.1e-137
Identity = 245/293 (83.62%), Postives = 257/293 (87.71%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLSDNM GEAVLSACF+L+R+ HKRLDKTPYELWKGH PN+ YLKV  CL K
Sbjct: 639 MNAMLLSSGLSDNMWGEAVLSACFILNRIPHKRLDKTPYELWKGHAPNLSYLKVWGCLAK 698

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VP P LKK+TVG KTFDCIFIGYAQNS AY+FMCLNDKTINESRDAEFFEHVF LKQSL 
Sbjct: 699 VPLPALKKTTVGPKTFDCIFIGYAQNSAAYRFMCLNDKTINESRDAEFFEHVFPLKQSLY 758

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LS RMHDPE   IVSE PVSE V+T NL CELE RRSKRQR EK FGPDFLSTFIVE
Sbjct: 759 APSLSNRMHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVE 818

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEIDCNFTNLFLI+ED KTY EALNSV+S MWK+AIKSELDSL MN  W+LVDLPM N
Sbjct: 819 RRDEIDCNFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGN 878

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIR 294
           KPIRCKW FKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIR
Sbjct: 879 KPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc02g0042521 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 2.1e-133
Identity = 239/272 (87.87%), Postives = 246/272 (90.44%), Query Frame = 0


Query: 1   MNVMLLSSGLSDNMCGEAVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTK 60
           MN MLLSSGLS+NM GEAVLSA FVL+R+ HKRLDKTPYELWKGH P + YLKV  CL K
Sbjct: 223 MNAMLLSSGLSNNMWGEAVLSAYFVLNRIPHKRLDKTPYELWKGHAPKLSYLKVWGCLAK 282

Query: 61  VPFPTLKKSTVGSKTFDCIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLP 120
           VPFP LKKSTVGSKTFDCIFI YAQNSVAY+FMC NDKTINESRDAEFFEHVF LKQSL 
Sbjct: 283 VPFPALKKSTVGSKTFDCIFIEYAQNSVAYRFMCFNDKTINESRDAEFFEHVFPLKQSLS 342

Query: 121 VPGLSKRMHDPENPSIVSETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVE 180
            P LSKRMHDPENPSIVSETPVSETVNTSNLRCELEL RSKRQR EK FGPDFLSTFIVE
Sbjct: 343 APSLSKRMHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVE 402

Query: 181 RRDEIDCNFTNLFLIDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRN 240
           RRDEIDCNFTNL+LIDEDPKTY EALNSVESSMWK+AIKSELDSLVMN  WDLVDLPM N
Sbjct: 403 RRDEIDCNFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGN 462

Query: 241 KPIRCKWSFKRKTKPNGSIERYKARLVVVGYT 273
           KPIRCKW FKRKTKPNGSIERYK RLVVVGYT
Sbjct: 463 KPIRCKWIFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc02g0042521 vs. ExPASy TrEMBL
Match: A0A5D3CT68 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00120 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 3.0e-127
Identity = 232/279 (83.15%), Postives = 246/279 (88.17%), Query Frame = 0


Query: 18  AVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLTKVPFPTLKKSTVGSKTFD 77
           AVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECL KVPFPTLKKSTVGSKTFD
Sbjct: 136 AVLSACFVLDRLIHKRLDKTPYELWKGHVPNIFYLKVRECLAKVPFPTLKKSTVGSKTFD 195

Query: 78  CIFIGYAQNSVAYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVPGLSKRMHDPENPSIV 137
           CIFIGYAQNS AYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVP LSKRMHDPENPSIV
Sbjct: 196 CIFIGYAQNSAAYKFMCLNDKTINESRDAEFFEHVFSLKQSLPVPDLSKRMHDPENPSIV 255

Query: 138 SETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDE 197
           SETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDE
Sbjct: 256 SETPVSETVNTSNLRCELELRRSKRQRIEKCFGPDFLSTFIVERRDEIDCNFTNLFLIDE 315

Query: 198 DPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFK-----RK 257
           DPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIR +  F      +K
Sbjct: 316 DPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRLRTPFDASKHLKK 375

Query: 258 TKPNGSIERYKARLV-----VVGYTQKQGIDYFDTYSPV 287
            K + + +   A+++     ++ YT+       D+ +P+
Sbjct: 376 NKGDSASQPEYAKIIGSVMYLMNYTKPDIAYACDSQAPI 414

[Close]

BLAST of Cmc02g0042521 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-38
Identity = 75/162 (46.30%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 197 EDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFKRKTKPN 256
           ++P TY+EA    E  +W  A+  E+ ++     W++  LP   KPI CKW +K K   +
Sbjct: 84  KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 257 GSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALAAIHSLLIHQMDVKAAFL 316
           G+IERYKARLV  GYTQ++GID+ +T+SPV K+T++++++A++AI++  +HQ+D+  AFL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 317 NGDLEEEIYMTQPEGFKIPGQE----NKVCKLRKSLYGLKQA 355
           NGDL+EEIYM  P G+     +    N VC L+KS+YGLKQA
Sbjct: 204 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQA 242

[Close]

BLAST of Cmc02g0042521 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 40/105 (38.10%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 195 IDEDPKTYHEALNSVESSMWKKAIKSELDSLVMNQKWDLVDLPMRNKPIRCKWSFKRKTK 254
           I ++PK+    + +++   W +A++ ELD+L  N+ W LV  P+    + CKW FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 255 PNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRVLIALA 300
            +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc02g0042521 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	1.4e-171	85.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038001.1	3.7e-140	87.41	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	1.5e-136	83.62	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ97996.1	4.4e-133	87.87	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14234.1	6.1e-127	83.15	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc02g0042521 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.2e-50	34.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	4.1e-33	45.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.7e-32	43.75	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	9.5e-30	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.9e-14	38.10	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0042521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	6.8e-172	85.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8N6	1.8e-140	87.41	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T166	7.1e-137	83.62	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BFX4	2.1e-133	87.87	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CT68	3.0e-127	83.15	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc02g0042521 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.5e-38	46.30	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.4e-15	38.10	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 228..354 e-value: 5.6E-46 score: 157.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 197..355
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 229..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0042521.1	Cmc02g0042521.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding