Cmc02g0042381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr02: 4061648 .. 4062441 (-)
RNA-Seq Expression	Cmc02g0042381
Synteny	Cmc02g0042381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGAAGAAGTCTATGTTGAACAACCGGAAGATTTTGTCAAAAAGGATAGCGAAGAAAAAGTGTATAAGTTGACAAAGGCATTGTATGGGTTGAAACAAGCTCCTTGGGCGTGGTATAGCGAAATTGACGGGTATTTTCAGCAAAATGGATTCAAAAGGAGTGCAAACGAGCCTACCTTGTATGTGAAAAAGGGAGGTAAAAATGACTTCATCATTGTTTGTCTTTATGTTAATGATATTATTTATACTAGTTTCTCTAAATCTCTTGTCGCTAAATTCAAATCACATATGAAGAATGAATTTGAGATGATGGATTTAGGTTTGCTACATTTCTTTCTTGGTGTCAAATTGATGGTGGGATATTTATCTCACAAAAGAAGTACGCCAAGGATCTTCTCAAAAAGTTTGGTATGCTCAATTGCAAGCCGACAATTACACCAATGAATTTAAATGAGAAGCCGCAACAAAATGATGGTGGGGAGATGGCCAATGCGCAACGATTTAGAAGCCTTGTTGGAGGCTTGATTTATCTAACACATACCCGTTTCGATATTTTGTATTTTATTGGAGTGATTTTTAGGATTATGCAACGTCCTTCAAGGGACCATATCGGAGCAGCGAAGCGGGTTATGCGATACATTGTTGGAACGATGGAGTATGACATTTGGTACTCTAAAGTTTCTGATTTTAAATTATGCGGGTTCATAGACAGTGATTGGGCGAGCTCTTTGGATGAGAGGCGAAGTGTTTCAGCAAATATTTTCACTTTTGGGTCAGGAGTTATCACTTGA

mRNA sequence

ATGCAAGAAGAAGTCTATGTTGAACAACCGGAAGATTTTGTCAAAAAGGATAGCGAAGAAAAAGTGTATAAGTTGACAAAGGCATTGTATGGGTTGAAACAAGCTCCTTGGGCGTGGTATAGCGAAATTGACGGGTATTTTCAGCAAAATGGATTCAAAAGGAGTGCAAACGAGCCTACCTTGTATGTGAAAAAGGGAGGTAAAAATGACTTCATCATTGTTTGTCTTTATGTTAATGATATTATTTATACTAGTTTCTCTAAATCTCTTGTCGCTAAATTCAAATCACATATGAAGAATGAATTTGAGATGATGGATTTAGGTTTGCTACATTTCTTTCTTGGTGTCAAATTGATGGTGGGATATTTATCTCACAAAAGAAGTACGCCAAGGATCTTCTCAAAAAGTTTGCCGCAACAAAATGATGGTGGGGAGATGGCCAATGCGCAACGATTTAGAAGCCTTGTTGGAGGCTTGATTTATCTAACACATACCCGTTTCGATATTTTGTATTTTATTGGAGTGATTTTTAGGATTATGCAACGTCCTTCAAGGGACCATATCGGAGCAGCGAAGCGGGTTATGCGATACATTGTTGGAACGATGGAGTATGACATTTGGTACTCTAAAGTTTCTGATTTTAAATTATGCGGGTTCATAGACAGTGATTGGGCGAGCTCTTTGGATGAGAGGCGAAGTGTTTCAGCAAATATTTTCACTTTTGGGTCAGGAGTTATCACTTGA

Coding sequence (CDS)

ATGCAAGAAGAAGTCTATGTTGAACAACCGGAAGATTTTGTCAAAAAGGATAGCGAAGAAAAAGTGTATAAGTTGACAAAGGCATTGTATGGGTTGAAACAAGCTCCTTGGGCGTGGTATAGCGAAATTGACGGGTATTTTCAGCAAAATGGATTCAAAAGGAGTGCAAACGAGCCTACCTTGTATGTGAAAAAGGGAGGTAAAAATGACTTCATCATTGTTTGTCTTTATGTTAATGATATTATTTATACTAGTTTCTCTAAATCTCTTGTCGCTAAATTCAAATCACATATGAAGAATGAATTTGAGATGATGGATTTAGGTTTGCTACATTTCTTTCTTGGTGTCAAATTGATGGTGGGATATTTATCTCACAAAAGAAGTACGCCAAGGATCTTCTCAAAAAGTTTGCCGCAACAAAATGATGGTGGGGAGATGGCCAATGCGCAACGATTTAGAAGCCTTGTTGGAGGCTTGATTTATCTAACACATACCCGTTTCGATATTTTGTATTTTATTGGAGTGATTTTTAGGATTATGCAACGTCCTTCAAGGGACCATATCGGAGCAGCGAAGCGGGTTATGCGATACATTGTTGGAACGATGGAGTATGACATTTGGTACTCTAAAGTTTCTGATTTTAAATTATGCGGGTTCATAGACAGTGATTGGGCGAGCTCTTTGGATGAGAGGCGAAGTGTTTCAGCAAATATTTTCACTTTTGGGTCAGGAGTTATCACTTGA

Protein sequence

MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPTLYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMVGYLSHKRSTPRIFSKSLPQQNDGGEMANAQRFRSLVGGLIYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFIDSDWASSLDERRSVSANIFTFGSGVIT

Homology

[Close]

BLAST of Cmc02g0042381 vs. NCBI nr
Match: TYK27736.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 3.9e-104
Identity = 201/267 (75.28%), Postives = 218/267 (81.65%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
           +QEEVYVEQ E F KKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 88  LQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 147

Query: 61  LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKL-- 120
           LYVKKGGKNDFIIVCLYV+DIIYTS SKSLVA+FKSHMKN+FEM+DLGLLHFFLG+++  
Sbjct: 148 LYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAEFKSHMKNKFEMIDLGLLHFFLGLEVCQ 207

Query: 121 ------------------MVGYLSHKRSTPRIFSKSLPQQNDGGEMANAQRFRSLVGGLI 180
                               G ++ K +T  +      QQNDG EMANAQRFRSLVGGLI
Sbjct: 208 TEGGIFISQKKYAKDLLKKFGMINCKPTTRPMNVNEKLQQNDGAEMANAQRFRSLVGGLI 267

Query: 181 YLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFI 240
           YLTHTR DI Y IGVIF+ MQRPSRDH GAAKRVMRYI GT+EY IWYSKVSDFKLCGF 
Sbjct: 268 YLTHTRPDISYSIGVIFKFMQRPSRDHFGAAKRVMRYIAGTIEYGIWYSKVSDFKLCGFT 327

Query: 241 DSDWASSLDERRSVSANIFTFGSGVIT 248
           DSDWASSLD+RRSVSAN+FT G GVIT
Sbjct: 328 DSDWASSLDDRRSVSANVFTLGLGVIT 354

[Close]

BLAST of Cmc02g0042381 vs. NCBI nr
Match: KAA0056051.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 375.9 bits (964), Expect = 2.6e-100
Identity = 198/267 (74.16%), Postives = 213/267 (79.78%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
           +QEEVYVEQ E F KKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 88  LQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 147

Query: 61  LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKL-- 120
           LYVKKGGKNDFIIVCLYV+DIIYTS SKSLVA+FKSHMKN+FEM DLGLLHFFLG+++  
Sbjct: 148 LYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 207

Query: 121 ------------------MVGYLSHKRSTPRIFSKSLPQQNDGGEMANAQRFRSLVGGLI 180
                               G ++ K +T  I      QQNDG EMANAQRFRSLVGGLI
Sbjct: 208 TEGGIFISQKKYAKDLLKKFGMINCKPATRPINVNEKLQQNDGAEMANAQRFRSLVGGLI 267

Query: 181 YLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFI 240
           YLTHTR DI Y IGVI R MQRPSRDH  AAKRVMRYI GT+EY IW SKVS+FKLCGF 
Sbjct: 268 YLTHTRPDISYSIGVISRFMQRPSRDHFRAAKRVMRYIAGTIEYGIWCSKVSNFKLCGFT 327

Query: 241 DSDWASSLDERRSVSANIFTFGSGVIT 248
           DSDWASSL +RRSVSAN+FT G GVIT
Sbjct: 328 DSDWASSLGDRRSVSANVFTLGLGVIT 354

[Close]

BLAST of Cmc02g0042381 vs. NCBI nr
Match: KAA0046865.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 4.9e-83
Identity = 176/268 (65.67%), Postives = 196/268 (73.13%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
           +QEEVYVE+PE FVKKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 754 LQEEVYVEKPEGFVKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 813

Query: 61  LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMV 120
           LY KKGGKNDFIIVCLYV+DIIYTS S SLVA+FKSHMKN+FEM DLGLLHFFLG+++  
Sbjct: 814 LYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 873

Query: 121 G----YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGL 180
                ++S K+                 +TP+  +K L QQNDG EMA+AQRFRSLVGGL
Sbjct: 874 TDGGIFISQKKYAKDLLKKFGMINCKPATTPKNVNKKL-QQNDGVEMADAQRFRSLVGGL 933

Query: 181 IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 240
           IYLTHTR DI Y IGVI R MQ PSRDH GAAK+VM+YI GT+EY IW            
Sbjct: 934 IYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKQVMQYIAGTIEYGIW------------ 993

Query: 241 IDSDWASSLDERRSVSANIFTFGSGVIT 248
                       RSVS N+FT  SGVIT
Sbjct: 994 ------------RSVSVNVFTLASGVIT 996

[Close]

BLAST of Cmc02g0042381 vs. NCBI nr
Match: TYK03281.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 318.5 bits (815), Expect = 4.9e-83
Identity = 176/268 (65.67%), Postives = 196/268 (73.13%), Query Frame = 0


Query: 1    MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
            +QEEVYVE+PE FVKKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 766  LQEEVYVEKPEGFVKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 825

Query: 61   LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMV 120
            LY KKGGKNDFIIVCLYV+DIIYTS S SLVA+FKSHMKN+FEM DLGLLHFFLG+++  
Sbjct: 826  LYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 885

Query: 121  G----YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGL 180
                 ++S K+                 +TP+  +K L QQNDG EMA+AQRFRSLVGGL
Sbjct: 886  TDGGIFISQKKYAKDLLKKFGMINCKPATTPKNVNKKL-QQNDGVEMADAQRFRSLVGGL 945

Query: 181  IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 240
            IYLTHTR DI Y IGVI R MQ PSRDH GAAK+VM+YI GT+EY IW            
Sbjct: 946  IYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKQVMQYIAGTIEYGIW------------ 1005

Query: 241  IDSDWASSLDERRSVSANIFTFGSGVIT 248
                        RSVS N+FT  SGVIT
Sbjct: 1006 ------------RSVSVNVFTLASGVIT 1008

[Close]

BLAST of Cmc02g0042381 vs. NCBI nr
Match: KAA0025703.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK12578.1 putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 8.7e-80
Identity = 164/233 (70.39%), Postives = 183/233 (78.54%), Query Frame = 0


Query: 3   EEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPTLY 62
           E VYVEQPEDFVKKD+ EKVYKLTKALYGLKQAP AWYS+ID YF+QNGFKRSANEPTLY
Sbjct: 181 ELVYVEQPEDFVKKDTGEKVYKLTKALYGLKQAPRAWYSKIDKYFKQNGFKRSANEPTLY 240

Query: 63  VKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMVG- 122
           VKKGGKNDFIIVCLYV+DIIYTS SKSLVA+FKSH KN+FEM DL LL+FFLG+++    
Sbjct: 241 VKKGGKNDFIIVCLYVDDIIYTSSSKSLVAEFKSHRKNKFEMTDLCLLYFFLGLEVCQTD 300

Query: 123 ---YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGLIY 182
              ++S K+                 +TP   ++ L QQNDG EMANAQRFRSLVGGLIY
Sbjct: 301 GGIFISQKKYVKDLLKKFSMINCKPATTPMNVNEKL-QQNDGAEMANAQRFRSLVGGLIY 360

Query: 183 LTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDF 215
           LTHTR DI Y IGVI R MQ PSRDH GAA RVMRYI G +EY IWYSKV+D+
Sbjct: 361 LTHTRPDISYSIGVISRFMQHPSRDHFGAANRVMRYIAGIIEYGIWYSKVTDY 412

[Close]

BLAST of Cmc02g0042381 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-34
Identity = 92/277 (33.21%), Postives = 145/277 (52.35%), Query Frame = 0


Query: 1    MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
            ++EE+Y+EQPE F     +  V KL K+LYGLKQAP  WY + D + +   + ++ ++P 
Sbjct: 932  LEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPC 991

Query: 61   LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMV 120
            +Y K+  +N+FII+ LYV+D++     K L+AK K  +   F+M DLG     LG+K++ 
Sbjct: 992  VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1051

Query: 121  GYLSHKR-----------------------STP-----RIFSKSLPQQ-NDGGEMANAQR 180
               S K                        STP     ++  K  P    + G MA    
Sbjct: 1052 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVP- 1111

Query: 181  FRSLVGGLIY-LTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSK 240
            + S VG L+Y +  TR DI + +GV+ R ++ P ++H  A K ++RY+ GT    + +  
Sbjct: 1112 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG 1171

Query: 241  VSDFKLCGFIDSDWASSLDERRSVSANIFTFGSGVIT 248
             SD  L G+ D+D A  +D R+S +  +FTF  G I+
Sbjct: 1172 -SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAIS 1206

[Close]

BLAST of Cmc02g0042381 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-32
Identity = 86/263 (32.70%), Postives = 137/263 (52.09%), Query Frame = 0


Query: 1    MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
            + ++VY+ QP  F+ KD    V KL KALYGLKQAP AWY E+  Y    GF  S ++ +
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 61   LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGV---K 120
            L+V + GK+  + + +YV+DI+ T    +L+     ++   F + D   LH+FLG+   +
Sbjct: 1135 LFVLQRGKS-IVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKR 1194

Query: 121  LMVG-YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGL 180
            +  G +LS +R                 +TP   S  L   + G ++ +   +R +VG L
Sbjct: 1195 VPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYS-GTKLTDPTEYRGIVGSL 1254

Query: 181  IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 240
             YL  TR DI Y +  + + M  P+ +H+ A KR++RY+ GT  + I+  K +   L  +
Sbjct: 1255 QYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAY 1314

Query: 241  IDSDWASSLDERRSVSANIFTFG 243
             D+DWA   D+  S +  I   G
Sbjct: 1315 SDADWAGDKDDYVSTNGYIVYLG 1335

[Close]

BLAST of Cmc02g0042381 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.9e-30
Identity = 86/263 (32.70%), Postives = 136/263 (51.71%), Query Frame = 0


Query: 1    MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
            + +EVY+ QP  FV KD  + V +L KA+YGLKQAP AWY E+  Y    GF  S ++ +
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1117

Query: 61   LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGV---K 120
            L+V + G++  I + +YV+DI+ T     L+      +   F + +   LH+FLG+   +
Sbjct: 1118 LFVLQRGRS-IIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKR 1177

Query: 121  LMVG-YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGL 180
            +  G +LS +R                 +TP   S  L   + G ++ +   +R +VG L
Sbjct: 1178 VPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKL-TLHSGTKLPDPTEYRGIVGSL 1237

Query: 181  IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 240
             YL  TR D+ Y +  + + M  P+ DH  A KRV+RY+ GT ++ I+  K +   L  +
Sbjct: 1238 QYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAY 1297

Query: 241  IDSDWASSLDERRSVSANIFTFG 243
             D+DWA   D+  S +  I   G
Sbjct: 1298 SDADWAGDTDDYVSTNGYIVYLG 1318

[Close]

BLAST of Cmc02g0042381 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-22
Identity = 76/262 (29.01%), Postives = 135/262 (51.53%), Query Frame = 0


Query: 1    MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
            ++EE+Y+  P+      + + V KL KA+YGLKQA   W+   +   ++  F  S+ +  
Sbjct: 1012 LKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRC 1071

Query: 61   LYV-KKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLM 120
            +Y+  KG  N+ I V LYV+D++  +   + +  FK ++  +F M DL  +  F+G+++ 
Sbjct: 1072 IYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE 1131

Query: 121  VG----YLSHKRSTPRIFSK---------SLPQQND-GGEMANAQR-----FRSLVGGLI 180
            +     YLS      +I SK         S P  +    E+ N+        RSL+G L+
Sbjct: 1132 MQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLM 1191

Query: 181  Y-LTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDF--KLC 240
            Y +  TR D+   + ++ R   + + +     KRV+RY+ GT++  + + K   F  K+ 
Sbjct: 1192 YIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKII 1251

[Close]

BLAST of Cmc02g0042381 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-17
Identity = 57/191 (29.84%), Postives = 91/191 (47.64%), Query Frame = 0


Query: 76  LYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMVG----YLSHKRSTPR 135
           LYV+DI+ T  S +L+      + + F M DLG +H+FLG+++       +LS  +   +
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 136 IFSKS---------------LPQQNDGGEMANAQRFRSLVGGLIYLTHTRFDILYFIGVI 195
           I + +               L       +  +   FRS+VG L YLT TR DI Y + ++
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIV 124

Query: 196 FRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFIDSDWASSLDERRSVSA 248
            + M  P+       KRV+RY+ GT+ + ++  K S   +  F DSDWA     RRS + 
Sbjct: 125 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 184

[Close]

BLAST of Cmc02g0042381 vs. ExPASy TrEMBL
Match: A0A5D3DVG4 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00860 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.9e-104
Identity = 201/267 (75.28%), Postives = 218/267 (81.65%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
           +QEEVYVEQ E F KKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 88  LQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 147

Query: 61  LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKL-- 120
           LYVKKGGKNDFIIVCLYV+DIIYTS SKSLVA+FKSHMKN+FEM+DLGLLHFFLG+++  
Sbjct: 148 LYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAEFKSHMKNKFEMIDLGLLHFFLGLEVCQ 207

Query: 121 ------------------MVGYLSHKRSTPRIFSKSLPQQNDGGEMANAQRFRSLVGGLI 180
                               G ++ K +T  +      QQNDG EMANAQRFRSLVGGLI
Sbjct: 208 TEGGIFISQKKYAKDLLKKFGMINCKPTTRPMNVNEKLQQNDGAEMANAQRFRSLVGGLI 267

Query: 181 YLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFI 240
           YLTHTR DI Y IGVIF+ MQRPSRDH GAAKRVMRYI GT+EY IWYSKVSDFKLCGF 
Sbjct: 268 YLTHTRPDISYSIGVIFKFMQRPSRDHFGAAKRVMRYIAGTIEYGIWYSKVSDFKLCGFT 327

Query: 241 DSDWASSLDERRSVSANIFTFGSGVIT 248
           DSDWASSLD+RRSVSAN+FT G GVIT
Sbjct: 328 DSDWASSLDDRRSVSANVFTLGLGVIT 354

[Close]

BLAST of Cmc02g0042381 vs. ExPASy TrEMBL
Match: A0A5A7URA0 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002180 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.3e-100
Identity = 198/267 (74.16%), Postives = 213/267 (79.78%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
           +QEEVYVEQ E F KKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 88  LQEEVYVEQLEGFDKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 147

Query: 61  LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKL-- 120
           LYVKKGGKNDFIIVCLYV+DIIYTS SKSLVA+FKSHMKN+FEM DLGLLHFFLG+++  
Sbjct: 148 LYVKKGGKNDFIIVCLYVDDIIYTSSSKSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 207

Query: 121 ------------------MVGYLSHKRSTPRIFSKSLPQQNDGGEMANAQRFRSLVGGLI 180
                               G ++ K +T  I      QQNDG EMANAQRFRSLVGGLI
Sbjct: 208 TEGGIFISQKKYAKDLLKKFGMINCKPATRPINVNEKLQQNDGAEMANAQRFRSLVGGLI 267

Query: 181 YLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFI 240
           YLTHTR DI Y IGVI R MQRPSRDH  AAKRVMRYI GT+EY IW SKVS+FKLCGF 
Sbjct: 268 YLTHTRPDISYSIGVISRFMQRPSRDHFRAAKRVMRYIAGTIEYGIWCSKVSNFKLCGFT 327

Query: 241 DSDWASSLDERRSVSANIFTFGSGVIT 248
           DSDWASSL +RRSVSAN+FT G GVIT
Sbjct: 328 DSDWASSLGDRRSVSANVFTLGLGVIT 354

[Close]

BLAST of Cmc02g0042381 vs. ExPASy TrEMBL
Match: A0A5A7TZP7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00180 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.4e-83
Identity = 176/268 (65.67%), Postives = 196/268 (73.13%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
           +QEEVYVE+PE FVKKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 754 LQEEVYVEKPEGFVKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 813

Query: 61  LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMV 120
           LY KKGGKNDFIIVCLYV+DIIYTS S SLVA+FKSHMKN+FEM DLGLLHFFLG+++  
Sbjct: 814 LYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 873

Query: 121 G----YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGL 180
                ++S K+                 +TP+  +K L QQNDG EMA+AQRFRSLVGGL
Sbjct: 874 TDGGIFISQKKYAKDLLKKFGMINCKPATTPKNVNKKL-QQNDGVEMADAQRFRSLVGGL 933

Query: 181 IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 240
           IYLTHTR DI Y IGVI R MQ PSRDH GAAK+VM+YI GT+EY IW            
Sbjct: 934 IYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKQVMQYIAGTIEYGIW------------ 993

Query: 241 IDSDWASSLDERRSVSANIFTFGSGVIT 248
                       RSVS N+FT  SGVIT
Sbjct: 994 ------------RSVSVNVFTLASGVIT 996

[Close]

BLAST of Cmc02g0042381 vs. ExPASy TrEMBL
Match: A0A5D3BU79 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001100 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.4e-83
Identity = 176/268 (65.67%), Postives = 196/268 (73.13%), Query Frame = 0


Query: 1    MQEEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPT 60
            +QEEVYVE+PE FVKKDSEEKVYKLTKALYGLKQAP AWYS+IDGYFQQNGFKRSANEPT
Sbjct: 766  LQEEVYVEKPEGFVKKDSEEKVYKLTKALYGLKQAPRAWYSKIDGYFQQNGFKRSANEPT 825

Query: 61   LYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMV 120
            LY KKGGKNDFIIVCLYV+DIIYTS S SLVA+FKSHMKN+FEM DLGLLHFFLG+++  
Sbjct: 826  LYEKKGGKNDFIIVCLYVDDIIYTSSSNSLVAEFKSHMKNKFEMTDLGLLHFFLGLEVCQ 885

Query: 121  G----YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGL 180
                 ++S K+                 +TP+  +K L QQNDG EMA+AQRFRSLVGGL
Sbjct: 886  TDGGIFISQKKYAKDLLKKFGMINCKPATTPKNVNKKL-QQNDGVEMADAQRFRSLVGGL 945

Query: 181  IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 240
            IYLTHTR DI Y IGVI R MQ PSRDH GAAK+VM+YI GT+EY IW            
Sbjct: 946  IYLTHTRPDISYSIGVISRFMQCPSRDHFGAAKQVMQYIAGTIEYGIW------------ 1005

Query: 241  IDSDWASSLDERRSVSANIFTFGSGVIT 248
                        RSVS N+FT  SGVIT
Sbjct: 1006 ------------RSVSVNVFTLASGVIT 1008

[Close]

BLAST of Cmc02g0042381 vs. ExPASy TrEMBL
Match: A0A5D3CN49 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001600 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.2e-80
Identity = 164/233 (70.39%), Postives = 183/233 (78.54%), Query Frame = 0


Query: 3   EEVYVEQPEDFVKKDSEEKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSANEPTLY 62
           E VYVEQPEDFVKKD+ EKVYKLTKALYGLKQAP AWYS+ID YF+QNGFKRSANEPTLY
Sbjct: 181 ELVYVEQPEDFVKKDTGEKVYKLTKALYGLKQAPRAWYSKIDKYFKQNGFKRSANEPTLY 240

Query: 63  VKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMVG- 122
           VKKGGKNDFIIVCLYV+DIIYTS SKSLVA+FKSH KN+FEM DL LL+FFLG+++    
Sbjct: 241 VKKGGKNDFIIVCLYVDDIIYTSSSKSLVAEFKSHRKNKFEMTDLCLLYFFLGLEVCQTD 300

Query: 123 ---YLSHKR-----------------STPRIFSKSLPQQNDGGEMANAQRFRSLVGGLIY 182
              ++S K+                 +TP   ++ L QQNDG EMANAQRFRSLVGGLIY
Sbjct: 301 GGIFISQKKYVKDLLKKFSMINCKPATTPMNVNEKL-QQNDGAEMANAQRFRSLVGGLIY 360

Query: 183 LTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDF 215
           LTHTR DI Y IGVI R MQ PSRDH GAA RVMRYI G +EY IWYSKV+D+
Sbjct: 361 LTHTRPDISYSIGVISRFMQHPSRDHFGAANRVMRYIAGIIEYGIWYSKVTDY 412

[Close]

BLAST of Cmc02g0042381 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-24
Identity = 75/271 (27.68%), Postives = 134/271 (49.45%), Query Frame = 0


Query: 1   MQEEVYVEQPEDFVKKDSE----EKVYKLTKALYGLKQAPWAWYSEIDGYFQQNGFKRSA 60
           + EE+Y++ P  +  +  +      V  L K++YGLKQA   W+ +        GF +S 
Sbjct: 204 LDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSH 263

Query: 61  NEPTLYVKKGGKNDFIIVCLYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGV 120
           ++ T ++K      F+ V +YV+DII  S + + V + KS +K+ F++ DLG L +FLG+
Sbjct: 264 SDHTYFLKITA-TLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGL 323

Query: 121 KLM--------------------VGYLSHKRSTPRIFSKSLPQQNDGGEMANAQRFRSLV 180
           ++                      G L  K S+  +        + GG+  +A+ +R L+
Sbjct: 324 EIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLI 383

Query: 181 GGLIYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKL 240
           G L+YL  TR DI + +  + +  + P   H  A  +++ YI GT+   ++YS  ++ +L
Sbjct: 384 GRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQL 443

Query: 241 CGFIDSDWASSLDERRSVSANIFTFGSGVIT 248
             F D+ + S  D RRS +      G+ +I+
Sbjct: 444 QVFSDASFQSCKDTRRSTNGYCMFLGTSLIS 473

[Close]

BLAST of Cmc02g0042381 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-18
Identity = 57/191 (29.84%), Postives = 91/191 (47.64%), Query Frame = 0


Query: 76  LYVNDIIYTSFSKSLVAKFKSHMKNEFEMMDLGLLHFFLGVKLMVG----YLSHKRSTPR 135
           LYV+DI+ T  S +L+      + + F M DLG +H+FLG+++       +LS  +   +
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 136 IFSKS---------------LPQQNDGGEMANAQRFRSLVGGLIYLTHTRFDILYFIGVI 195
           I + +               L       +  +   FRS+VG L YLT TR DI Y + ++
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIV 124

Query: 196 FRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGFIDSDWASSLDERRSVSA 248
            + M  P+       KRV+RY+ GT+ + ++  K S   +  F DSDWA     RRS + 
Sbjct: 125 CQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 184

[Close]

BLAST of Cmc02g0042381 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-08
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 160 IYLTHTRFDILYFIGVIFRIMQRPSRDHIGAAKRVMRYIVGTMEYDIWYSKVSDFKLCGF 219
           +YLT TR D+ + +  + +         + A  +V+ Y+ GT+   ++YS  SD +L  F
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 220 IDSDWASSLDERRSVS 236
            DSDWAS  D RRSV+
Sbjct: 61  ADSDWASCPDTRRSVT 76

The following BLAST results are available for this feature:

BLAST of Cmc02g0042381 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27736.1	3.9e-104	75.28	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0056051.1	2.6e-100	74.16	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0046865.1	4.9e-83	65.67	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK03281.1	4.9e-83	65.67	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
KAA0025703.1	8.7e-80	70.39	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa] >TYK12578.1 p...	[more]

BLAST of Cmc02g0042381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.6e-34	33.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	5.4e-32	32.70	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.9e-30	32.70	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.3e-22	29.01	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	2.9e-17	29.84	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0042381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DVG4	1.9e-104	75.28	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7URA0	1.3e-100	74.16	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TZP7	2.4e-83	65.67	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BU79	2.4e-83	65.67	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CN49	4.2e-80	70.39	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Cmc02g0042381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-24	27.68	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.0e-18	29.84	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	5.5e-08	36.84	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..118 e-value: 2.8E-32 score: 112.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..214
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 19..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0042381.1	Cmc02g0042381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008295	spermidine biosynthetic process
biological_process	GO:0006597	spermine biosynthetic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004014	adenosylmethionine decarboxylase activity
molecular_function	GO:0005488	binding