Cmc02g0042341 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042341
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr02: 3992829 .. 3993251 (-)
RNA-Seq Expression	Cmc02g0042341
Synteny	Cmc02g0042341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTATTTTTAATAGATGAGGATCCTAACACTTATCAAGAGGCCTTAAACTCTGTAGAGTCAAGTATGTGGAATGAGGCTATTAAGAGTGAACTGGATTCAGTGACCATGAATCAAACATGGGAATTAGTAGACCTTCCCAAAGGAAGTAAGCCAATTAAGTGTAAGTGGATCTTCAAAAGAAAAACAAGACCAAATGGGTCAATAGCAATGTATACTCAAAAGCAATGTATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCATAATTAGGGTCTTGATTGCACTAGCTTCTATACAGAGTCTTCTTATTCACCAGATGGATGTAAAAACTGCTTTTCTAAATGGTGATTTAGAAGAAGAAATTTATAACACAACCAGAAGGGTTCAAAATTCCTGGCCAAGAAAATAA

mRNA sequence

ATGAATTTATTTTTAATAGATGAGGATCCTAACACTTATCAAGAGGCCTTAAACTCTGTAGAGTCAAGTATGTGGAATGAGGCTATTAAGAGTGAACTGGATTCAGTGACCATGAATCAAACATGGGAATTAGTAGACCTTCCCAAAGGAAGTAAGCCAATTAAGTGTAAGTGGATCTTCAAAAGAAAAACAAGACCAAATGGGTCAATAGCAATGTATACTCAAAAGCAATGTATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCATAATTAGGGTCTTGATTGCACTAGCTTCTATACAGAGTCTTCTTATTCACCAGATGGATGTAAAAACTGCTTTTCTAAATGGTGATTTAGAAGAAGAAATTTATAACACAACCAGAAGGGTTCAAAATTCCTGGCCAAGAAAATAA

Coding sequence (CDS)

ATGAATTTATTTTTAATAGATGAGGATCCTAACACTTATCAAGAGGCCTTAAACTCTGTAGAGTCAAGTATGTGGAATGAGGCTATTAAGAGTGAACTGGATTCAGTGACCATGAATCAAACATGGGAATTAGTAGACCTTCCCAAAGGAAGTAAGCCAATTAAGTGTAAGTGGATCTTCAAAAGAAAAACAAGACCAAATGGGTCAATAGCAATGTATACTCAAAAGCAATGTATTGATTACTTTGACACATATTCCCCTGTAACTAAGATAACCATAATTAGGGTCTTGATTGCACTAGCTTCTATACAGAGTCTTCTTATTCACCAGATGGATGTAAAAACTGCTTTTCTAAATGGTGATTTAGAAGAAGAAATTTATAACACAACCAGAAGGGTTCAAAATTCCTGGCCAAGAAAATAA

Protein sequence

MNLFLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRKTRPNGSIAMYTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVKTAFLNGDLEEEIYNTTRRVQNSWPRK

Homology

[Close]

BLAST of Cmc02g0042341 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 5.3e-50
Identity = 105/137 (76.64%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 2   NLFLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFK 61
           NLFLIDEDP TYQEALNSV+S MW EAIKSELDS+ MN TWELVDLP G+KPI+CKWIFK
Sbjct: 826 NLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFK 885

Query: 62  RKTRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMD 121
           RKT+PNG I           YTQKQ +DYFDTYSPVTKIT IR LIALA+I +LLIHQMD
Sbjct: 886 RKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMD 945

Query: 122 VKTAFLNGDLEEEIYNT 130
           VKTAFLNG+LEEEIY T
Sbjct: 946 VKTAFLNGNLEEEIYMT 962

[Close]

BLAST of Cmc02g0042341 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-41
Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   MNLFLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIF 60
           +++FL++ DP TYQEA+ SV++++W EAIKSE+DS+  N TWEL DLPKG+KPI  KWIF
Sbjct: 176 VSIFLLENDPKTYQEAITSVDANLWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIF 235

Query: 61  KRKTRPNGSIAMY---------TQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQM 120
           K+K RP+G++  Y         TQK  +DYFDTYSPVTKIT IR LI++A+I  LLIHQM
Sbjct: 236 KKKLRPDGTVDKYKARLVIRGFTQKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQM 295

Query: 121 DVKTAFLNGDLEEEIY 128
           DVKTAFLNGDL+EEIY
Sbjct: 296 DVKTAFLNGDLDEEIY 311

[Close]

BLAST of Cmc02g0042341 vs. NCBI nr
Match: OMO89770.1 (Integrase, catalytic core [Corchorus capsularis])

HSP 1 Score: 170.6 bits (431), Expect = 9.4e-39
Identity = 85/139 (61.15%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 4   FLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRK 63
           +++D DP T+ EA++S ES  W  AIKSE+DS+  NQTWELV+LP G+K I CKWIFKRK
Sbjct: 721 YVVDNDPVTFSEAISSKESCFWKNAIKSEIDSILQNQTWELVNLPPGAKSIGCKWIFKRK 780

Query: 64  TRPNGSIAMY---------TQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVK 123
             PNGS+  Y         TQK+ IDYFDT++PVT+I+ IRVLIALASI   +IHQMDVK
Sbjct: 781 FNPNGSVDKYKARLVAKGFTQKENIDYFDTFAPVTRISSIRVLIALASIYKPVIHQMDVK 840

Query: 124 TAFLNGDLEEEIYNTTRRV 134
           TAFLNGDLE+EIY   ++V
Sbjct: 841 TAFLNGDLEDEIYMMQQKV 859

[Close]

BLAST of Cmc02g0042341 vs. NCBI nr
Match: PNX71449.1 (retrotransposon-related protein, partial [Trifolium pratense])

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-38
Identity = 82/134 (61.19%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 3   LFLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKR 62
           +FL+D DP TY EA++S +   W EAI +E+ S+  N TWE+VDLP+G+KPI CKWIFK+
Sbjct: 422 IFLVDGDPLTYSEAISSPDGPFWKEAIDNEIHSIMSNHTWEIVDLPQGAKPIGCKWIFKK 481

Query: 63  KTRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDV 122
           K +P+GS+           YTQK+  DYFDTYSPV ++T IRV IALASI +L+IHQMDV
Sbjct: 482 KLKPDGSVEKYKARLVAKGYTQKKGFDYFDTYSPVARMTSIRVAIALASIHNLVIHQMDV 541

Query: 123 KTAFLNGDLEEEIY 128
           KTAFLNGDLEEEIY
Sbjct: 542 KTAFLNGDLEEEIY 555

[Close]

BLAST of Cmc02g0042341 vs. NCBI nr
Match: KAG9440057.1 (hypothetical protein H6P81_020222 [Aristolochia fimbriata])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 82/133 (61.65%), Postives = 102/133 (76.69%), Query Frame = 0


Query: 4   FLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRK 63
           FLI++DP TY EA+ S ++S+W EA+KSE+DS+  + TW L DLP GS+PI CKWIFKRK
Sbjct: 47  FLIEDDPLTYTEAMRSSDASLWEEAVKSEMDSILSHNTWVLTDLPPGSRPIGCKWIFKRK 106

Query: 64  TRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVK 123
             P+GSI           Y+QK+ ID+FDTYSPVT+IT +RVLIALA+   L IHQMDVK
Sbjct: 107 RNPDGSIEKYKARLVAKGYSQKEGIDFFDTYSPVTRITTVRVLIALAASYKLEIHQMDVK 166

Query: 124 TAFLNGDLEEEIY 128
           TAFLNG+L+EEIY
Sbjct: 167 TAFLNGELDEEIY 179

[Close]

BLAST of Cmc02g0042341 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-23
Identity = 55/130 (42.31%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 7   DEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRKTRP 66
           D +P + +E L+  E +   +A++ E++S+  N T++LV+LPKG +P+KCKW+FK K   
Sbjct: 808 DREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDG 867

Query: 67  NGSIAMY---------TQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVKTAF 126
           +  +  Y          QK+ ID+ + +SPV K+T IR +++LA+   L + Q+DVKTAF
Sbjct: 868 DCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAF 927

Query: 127 LNGDLEEEIY 128
           L+GDLEEEIY
Sbjct: 928 LHGDLEEEIY 937

[Close]

BLAST of Cmc02g0042341 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-19
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 5    LIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRKT 64
            + ++ PN++ E     + S W EAI +EL++  +N TW +   P+    +  +W+F  K 
Sbjct: 886  IFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKY 945

Query: 65   RPNGSIAMY---------TQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVKT 124
               G+   Y         TQK  IDY +T++PV +I+  R +++L    +L +HQMDVKT
Sbjct: 946  NELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKT 1005

Query: 125  AFLNGDLEEEIY 128
            AFLNG L+EEIY
Sbjct: 1006 AFLNGTLKEEIY 1017

[Close]

BLAST of Cmc02g0042341 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-15
Identity = 47/131 (35.88%), Postives = 75/131 (57.25%), Query Frame = 0


Query: 7    DEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPI-KCKWIFKRKTR 66
            + +P T   A+ +++   W +A+ SE+++   N TW+LV  P  S  I  C+WIF +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 67   PNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVKTA 126
             +GS+           Y Q+  +DY +T+SPV K T IR+++ +A  +S  I Q+DV  A
Sbjct: 996  SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1055

Query: 127  FLNGDLEEEIY 128
            FL G L +E+Y
Sbjct: 1056 FLQGTLTDEVY 1063

[Close]

BLAST of Cmc02g0042341 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-14
Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 7    DEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPI-KCKWIFKRKTR 66
            + +P T   A+ +++   W  A+ SE+++   N TW+LV  P     I  C+WIF +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 67   PNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVKTA 126
             +GS+           Y Q+  +DY +T+SPV K T IR+++ +A  +S  I Q+DV  A
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 127  FLNGDLEEEIY 128
            FL G L +++Y
Sbjct: 1073 FLQGTLTDDVY 1080

[Close]

BLAST of Cmc02g0042341 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 25  WNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRKTRPNGSIAM---------YTQ 84
           W +A++ ELD+++ N+TW LV  P     + CKW+FK K   +G++           + Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 85  KQCIDYFDTYSPVTKITIIRVLIALA 102
           ++ I + +TYSPV +   IR ++ +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc02g0042341 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 105/137 (76.64%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 2   NLFLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFK 61
           NLFLIDEDP TYQEALNSV+S MW EAIKSELDS+ MN TWELVDLP G+KPI+CKWIFK
Sbjct: 826 NLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKWIFK 885

Query: 62  RKTRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMD 121
           RKT+PNG I           YTQKQ +DYFDTYSPVTKIT IR LIALA+I +LLIHQMD
Sbjct: 886 RKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMD 945

Query: 122 VKTAFLNGDLEEEIYNT 130
           VKTAFLNG+LEEEIY T
Sbjct: 946 VKTAFLNGNLEEEIYMT 962

[Close]

BLAST of Cmc02g0042341 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.8e-42
Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   MNLFLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIF 60
           +++FL++ DP TYQEA+ SV++++W EAIKSE+DS+  N TWEL DLPKG+KPI  KWIF
Sbjct: 176 VSIFLLENDPKTYQEAITSVDANLWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIF 235

Query: 61  KRKTRPNGSIAMY---------TQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQM 120
           K+K RP+G++  Y         TQK  +DYFDTYSPVTKIT IR LI++A+I  LLIHQM
Sbjct: 236 KKKLRPDGTVDKYKARLVIRGFTQKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQM 295

Query: 121 DVKTAFLNGDLEEEIY 128
           DVKTAFLNGDL+EEIY
Sbjct: 296 DVKTAFLNGDLDEEIY 311

[Close]

BLAST of Cmc02g0042341 vs. ExPASy TrEMBL
Match: A0A2N9HRF5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42205 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 4   FLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRK 63
           FL ++DP TYQEA+ S+++S W +AI SEL+S+  N TWELVDLP+G KPI CKW+FK+K
Sbjct: 424 FLSEDDPKTYQEAMKSIDASFWKDAINSELESIMANHTWELVDLPRGCKPIGCKWVFKKK 483

Query: 64  TRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVK 123
            + +GSI           YTQK+ +DYFDTYSPVTKIT IR+LIA+AS  +LL+HQMDVK
Sbjct: 484 LKADGSIDKFKARLVAKGYTQKEGVDYFDTYSPVTKITTIRILIAIASSHNLLVHQMDVK 543

Query: 124 TAFLNGDLEEEIY 128
           TAFLNGDL+EEIY
Sbjct: 544 TAFLNGDLDEEIY 556

[Close]

BLAST of Cmc02g0042341 vs. ExPASy TrEMBL
Match: A0A2N9HA40 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36667 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.9e-41
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 0


Query: 4   FLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRK 63
           FL ++DP TYQEA+ S+++S W +AI SEL+S+  N TWELVDLP+G KPI CKW+FK+K
Sbjct: 21  FLSEDDPKTYQEAMKSIDASFWKDAINSELESIMANHTWELVDLPRGCKPIGCKWVFKKK 80

Query: 64  TRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVK 123
            + +GSI           YTQK+ +DYFDTYSPVTKIT IR+LIA+AS  +LL+HQMDVK
Sbjct: 81  LKADGSIDKFKARLVAKGYTQKEGVDYFDTYSPVTKITTIRILIAIASSHNLLVHQMDVK 140

Query: 124 TAFLNGDLEEEIY 128
           TAFLNGDL+EEIY
Sbjct: 141 TAFLNGDLDEEIY 153

[Close]

BLAST of Cmc02g0042341 vs. ExPASy TrEMBL
Match: A0A2N9EWQ0 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7157 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 83/133 (62.41%), Postives = 104/133 (78.20%), Query Frame = 0


Query: 4   FLIDEDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRK 63
           FL ++DP TYQEA+ S+++S W +AI SEL+S+  N TWELVDLP+G KPI CKW+FK+K
Sbjct: 634 FLSEDDPKTYQEAMKSIDASFWKDAINSELESIMANHTWELVDLPRGCKPIGCKWVFKKK 693

Query: 64  TRPNGSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVK 123
            + +GSI           YTQK+ +DYFDTYSPVTKIT IR+LIA+AS  +LL+HQMDVK
Sbjct: 694 LKADGSIDKFKARLVAKGYTQKEGVDYFDTYSPVTKITTIRILIAIASSHNLLVHQMDVK 753

Query: 124 TAFLNGDLEEEIY 128
            AFLNGDL+EEIY
Sbjct: 754 IAFLNGDLDEEIY 766

[Close]

BLAST of Cmc02g0042341 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-24
Identity = 51/129 (39.53%), Postives = 83/129 (64.34%), Query Frame = 0


Query: 8   EDPNTYQEALNSVESSMWNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRKTRPN 67
           ++P+TY EA    E  +W  A+  E+ ++    TWE+  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 68  GSIAM---------YTQKQCIDYFDTYSPVTKITIIRVLIALASIQSLLIHQMDVKTAFL 127
           G+I           YTQ++ ID+ +T+SPV K+T +++++A+++I +  +HQ+D+  AFL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

[Close]

BLAST of Cmc02g0042341 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-09
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 25  WNEAIKSELDSVTMNQTWELVDLPKGSKPIKCKWIFKRKTRPNGSIAM---------YTQ 84
           W +A++ ELD+++ N+TW LV  P     + CKW+FK K   +G++           + Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 85  KQCIDYFDTYSPVTKITIIRVLIALA 102
           ++ I + +TYSPV +   IR ++ +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc02g0042341 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	5.3e-50	76.64	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAD6453934.1	2.0e-41	63.24	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]
OMO89770.1	9.4e-39	61.15	Integrase, catalytic core [Corchorus capsularis]	[more]
PNX71449.1	2.1e-38	61.19	retrotransposon-related protein, partial [Trifolium pratense]	[more]
KAG9440057.1	1.0e-37	61.65	hypothetical protein H6P81_020222 [Aristolochia fimbriata]	[more]

BLAST of Cmc02g0042341 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.6e-23	42.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.6e-19	37.12	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.4e-15	35.88	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.9e-14	34.35	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	1.2e-07	32.56	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc02g0042341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	2.6e-50	76.64	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5N6PGV2	9.8e-42	63.24	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A2N9HRF5	4.9e-41	63.16	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HA40	4.9e-41	63.16	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36667 PE=4 SV=1	[more]
A0A2N9EWQ0	2.4e-40	62.41	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc02g0042341 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.3e-24	39.53	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	8.3e-09	32.56	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 39..128 e-value: 4.6E-24 score: 85.4
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 9..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0042341.1	Cmc02g0042341.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0006952	defense response
biological_process	GO:0015074	DNA integration
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0140098	catalytic activity, acting on RNA
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0008270	zinc ion binding