Cmc02g0042241 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0042241
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr02: 3840537 .. 3842218 (+)
RNA-Seq Expression	Cmc02g0042241
Synteny	Cmc02g0042241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACCATGGTAGAAAAGGAAAAATATAACAATAATAAGTTCACAATAACAATTAATTAACACTAAACAAGATTAATTTTACTTCCCTAAACCCTAAAACCCCCCCAAATATTAATTTAATTTATTCTCTCCAAAACACAATATGAATACATACCACCTCCTAGGGTTCTTTAGTGGCTTCTCTTTCTATGGTGTTTTAGGGTTTACGTACCTTACCTTACTACTATTCTCGAGGCTTTTTTATTATTAGGGGTTTCTCTTTCTAAGGTTTTTAGGGTTTTCGGGGATAATTCTTAATCATCGCGGTACTGCCACAAGCCATTGCGTTCGGCGGAATCATTCCTACCTTATGAACTCCTTCCGCAAAGATAACTCCCATTCCCATGTGCAAATGAGGTTCAATATGGCAATGGAACGCCCAAACACCTGGGTTATCCGCCACAAATCGAATCGCCGTCCACCCATATGGGAAAATCACCACTGTATTCCTCAACGGTGGGTTTTTCAAATTCAATTTCCTCCCATCCTCGGCGGCGGAAAATTTCCCCTCTCCATACCCCAAAACCCAAAAGTCATGCCCGTGCAAATGCCAAGGGTGAATCTCACTCGTATTGGCGTTTAACATATTAGCGTTTTGTAGAATCACGTCTACCGTTTCCCCCATATTGAACTTGTAAACGCCGTTGCCCGTTGCCGTTTCAGGGTTCCGCGGTGGGTTGTTGATGTCGTAGTCTATTGGGAATGTTTCTGGTGGCGGATTTTGGTTGAAGGCAGTGCTTAGCCTGAATTTCATGGCGGCGAGGTACGGCGTTGGAGGGAGAGCTAAAGAGACATTGTTGATGGCCCATTTCATGAACCCGTTTATTCGATTTTGGGTGTTGAGGAGGAAGAGGCGGCGGTTGTATCTCACCGGTGGCTTTGGACTGCCCATGGCGGCGAAGATTCTGAACGTGAAGTTTTTGCTCCGGTCAAAATCCTCCCAGTCTGGGGTTTCCGGAGGCGGAGAAATGGGTAATTTGGAGACGGAGTTGGGGAGGTAGTTGAGGACGGTTAGTCCTGGAGGGGTTTTGGGTAGCCGTGCGCGGACGCCAATGGATACCCAGTAGTTTTCCGATGGGTTTTGGTCGGTGGTAATGAGGACGGAGTAGGACTCGCCGGAATAAATATCGATATCGGAAGTTGAAAATGGTTGAACGTAGTTGCCGTCGGCTTCTACCACTAACAGTTTGTGATTCTGAAGAAGAAGAAATCATTGTTAAAATTAGTTTTAAATTCGGATAGACATTAACATTGAAAGTTGAAGATATTATTTAGTGAAAAAAATTAAAGTTTAAAAATATAAAATATAAAATTTTAAATCTAAAGATTAAATTGAAAAGAAGTCTTAATTTAATTTTAAAAGTAATAAGTGTAACAGTTCATAACTAAAATAATATCAAACGGAGATTAGAATTTTTTGTTCATAATTATGTAAGTTACTTTTGATGACTTTTATTTTGATTTTCAATTAATAGTTATTCGATCTATGAATGATAGACATGAATTATTAACATTCTAATATGCAATTATTCTAGAAAGGACAAAACAAAAATGAAATTTTGAGCATTCTGTTTTTATGATTGAAAAAGGCTAAGATTTTGTTTTGTGGTGCATGATTGAATAGAGGTGGACCTCATTTTGT

mRNA sequence

CTTCACCATGGTAGAAAAGGAAAAATATAACAATAATAAGTTCACAATAACAATTAATTAACACTAAACAAGATTAATTTTACTTCCCTAAACCCTAAAACCCCCCCAAATATTAATTTAATTTATTCTCTCCAAAACACAATATGAATACATACCACCTCCTAGGGTTCTTTAGTGGCTTCTCTTTCTATGGTGTTTTAGGGTTTACGTACCTTACCTTACTACTATTCTCGAGGCTTTTTTATTATTAGGGGTTTCTCTTTCTAAGGTTTTTAGGGTTTTCGGGGATAATTCTTAATCATCGCGGTACTGCCACAAGCCATTGCGTTCGGCGGAATCATTCCTACCTTATGAACTCCTTCCGCAAAGATAACTCCCATTCCCATGTGCAAATGAGGTTCAATATGGCAATGGAACGCCCAAACACCTGGGTTATCCGCCACAAATCGAATCGCCGTCCACCCATATGGGAAAATCACCACTGTATTCCTCAACGGTGGGTTTTTCAAATTCAATTTCCTCCCATCCTCGGCGGCGGAAAATTTCCCCTCTCCATACCCCAAAACCCAAAAGTCATGCCCGTGCAAATGCCAAGGGTGAATCTCACTCGTATTGGCGTTTAACATATTAGCGTTTTGTAGAATCACGTCTACCGTTTCCCCCATATTGAACTTGTAAACGCCGTTGCCCGTTGCCGTTTCAGGGTTCCGCGGTGGGTTGTTGATGTCGTAGTCTATTGGGAATGTTTCTGGTGGCGGATTTTGGTTGAAGGCAGTGCTTAGCCTGAATTTCATGGCGGCGAGGTACGGCGTTGGAGGGAGAGCTAAAGAGACATTGTTGATGGCCCATTTCATGAACCCGTTTATTCGATTTTGGGTGTTGAGGAGGAAGAGGCGGCGGTTGTATCTCACCGGTGGCTTTGGACTGCCCATGGCGGCGAAGATTCTGAACGTGAAGTTTTTGCTCCGGTCAAAATCCTCCCAGTCTGGGGTTTCCGGAGGCGGAGAAATGGGTAATTTGGAGACGGAGTTGGGGAGGTAGTTGAGGACGGTTAGTCCTGGAGGGGTTTTGGGTAGCCGTGCGCGGACGCCAATGGATACCCAGTAGTTTTCCGATGGGTTTTGGTCGGTGGTAATGAGGACGGAGTAGGACTCGCCGGAATAAATATCGATATCGGAAGTTGAAAATGGTTGAACGTAGTTGCCGTCGGCTTCTACCACTAACAGTTTGTGATTCTGAAGAAGAAGAAATCATTGTTAAAATTAGTTTTAAATTCGGATAGACATTAACATTGAAAGTTGAAGATATTATTTAGTGAAAAAAATTAAAGTTTAAAAATATAAAATATAAAATTTTAAATCTAAAGATTAAATTGAAAAGAAGTCTTAATTTAATTTTAAAAGTAATAAGTGTAACAGTTCATAACTAAAATAATATCAAACGGAGATTAGAATTTTTTGTTCATAATTATGTAAGTTACTTTTGATGACTTTTATTTTGATTTTCAATTAATAGTTATTCGATCTATGAATGATAGACATGAATTATTAACATTCTAATATGCAATTATTCTAGAAAGGACAAAACAAAAATGAAATTTTGAGCATTCTGTTTTTATGATTGAAAAAGGCTAAGATTTTGTTTTGTGGTGCATGATTGAATAGAGGTGGACCTCATTTTGT

Coding sequence (CDS)

ATGGCGGCGAGGTACGGCGTTGGAGGGAGAGCTAAAGAGACATTGTTGATGGCCCATTTCATGAACCCGTTTATTCGATTTTGGGTGTTGAGGAGGAAGAGGCGGCGGTTGTATCTCACCGGTGGCTTTGGACTGCCCATGGCGGCGAAGATTCTGAACGTGAAGTTTTTGCTCCGGTCAAAATCCTCCCAGTCTGGGGTTTCCGGAGGCGGAGAAATGGGTAATTTGGAGACGGAGTTGGGGAGGTAG

Protein sequence

MAARYGVGGRAKETLLMAHFMNPFIRFWVLRRKRRRLYLTGGFGLPMAAKILNVKFLLRSKSSQSGVSGGGEMGNLETELGR

Homology

[Close]

BLAST of Cmc02g0042241 vs. ExPASy TrEMBL
Match: A0A0A9BLZ3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 1  MAARYGVGGRAKETLLMAHFMNPFIRFWVLRRKRRRLYLTGG----FGLPMAAKILNVKF 60
          MA RYGV G  KETLL AH + P I FWVLRR+  R    GG     G    A +   ++
Sbjct: 1  MATRYGVWGSMKETLLRAHLIRPSILFWVLRRRMNRSARGGGGTACAGCATVATLWRNRY 60

Query: 61 LLRSKSS-QSGVSGGGEMG 75
          ++  ++  + GV GGG  G
Sbjct: 61 MVSFQAGPEGGVVGGGRRG 79

The following BLAST results are available for this feature:

BLAST of Cmc02g0042241 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc02g0042241 vs.


Match Name	E-value	Identity	Description

BLAST of Cmc02g0042241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9BLZ3	1.3e-04	41.77	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of Cmc02g0042241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0042241.1	Cmc02g0042241.1	mRNA