Cmc02g0041401 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0041401
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionLRR receptor-like serine/threonine-protein kinase
LocationCMiso1.1chr02: 3011211 .. 3012828 (-)
RNA-Seq ExpressionCmc02g0041401
SyntenyCmc02g0041401
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGATCGACTTCGGAACTTCACCAGAAAAATTGTTTCCAGACAACATTAGCAGCATAATAGCATTGGCATTACCAATATTTTCAGGCAGTTCTCCAGAAAAGTTGTTCCTAGACAGGTCGAGCACCGATAGACTTAGCGACTCAAAGAGACGAGGAGGAAGAGAACCCGAAAGCTTATTATCTGAGAGAATGATGGAACCAAGAGCCATTTCAGCCAGCCATAGAGGAAATGTTCCTTCTAGTTTGTTCTTCCTCAAATCCAGGAAATTCAAACCCTTCTGTGAAGAAATCCATCCTGGGATCTCTCCTATGAGCCCACAAGACTTCAACGACAGTCGAGAAAGCATTTGCTTCGGTTTTACGCTTTTAATGCTGTTGTTCCAAGTCATCAAATTGCCTCCAATTAGCACATCAACTAGCCCTTTCATATCGAACAGCCATATCGGAACAAGCCCTTCAAGTAAGTTGTTTTCCAGTTCCAATTGTTTCAACTTTTCCATGTGCTGTAGTGATGTTGGAATTGTGCCATTCAATTTGTTATTGCTCAAGGCTAAATACGTCAAGTTGTACAGACTGCCAATATCTGAAGGAATTCCCATTGTAAACTTGTTGTCCCTCATGTCCAGTGTCTCTAAAGATTTCAAATTGACAATGGTGAGCGGGATTTCCCCCACGAAGCTGTTGTCGCGGATGAACAGTTTCTGCAGCATTTTTAGGTCGCCAATTTCCTCGGGAAACTTTCCGGTAAGAGAATTGCTATCCAACTTCAGCACTCTCAAGTTCCTAAGAAACCTCACATCTGAAGTCAAAGCTCCATCAAGCAAATTGCTGCTCATGTCAAGATATTGAAGGTATCGCAGACGATACATCTGTGGAGGAATCGAACCACTAAACTTATTCGACATTAGGTTAAGGTTAACCATCTTACTTAGATTACCAAACCCTGGCCCTGAGATTTGGCCCTCAAAGTAGTTCGAAGACAAATCGAGTAACATCAAGCTTCTAATGGTGAAAAGTGGCATCAATGCCTTACCATCAAGTGGCAATGGATCATCAGTAATCCTCCAAGCAAGAGAGTAAAGATTAAGACCCTGAACCATCCTTGAGCGAGAATCCGGAGAAGAGCAGACAACTCTTTCCCAATGGCAGCAATCTGTAGTCGAATTCCATGAATCCAAAGAGGAGAAGAGAGGGATGGAACTATTGGGAGAAATTGTAGTAGAGAGAAGGGAGTCTTTAAAGAGGAGGAGGGCTTGCTTTTGTTGATCAGGACATGAGAAAATACAAGGGAGCACGAATAAAAACACTACAAATTGGATAAGAATATGAAGGAAATGAAGATCTTCCATTGGATGCAGCAGAAGAAAGCTTCAAGTGAGAAGAGAAGATACTTTTCCTATGGAGCATTTGAAATTCAGGTACGTTCACAACTTTTATATGAGAAAGGAAACTACTGTTGATGAGTGATGGTTTAATAAGTATTTTTATCTGCCAACATTTCAAAGTCAATGGTCAATGTGAATGGCCATTGATTTGGGGGAAAGTGGGGGAAAATGACAATGTTGGGAGAGAGGTTTACCAATTGACTATGACCTTTGTAAATGGAAAATGG

mRNA sequence

ATGTTTGAGATCGACTTCGGAACTTCACCAGAAAAATTGTTTCCAGACAACATTAGCAGCATAATAGCATTGGCATTACCAATATTTTCAGGCAGTTCTCCAGAAAAGTTGTTCCTAGACAGGTCGAGCACCGATAGACTTAGCGACTCAAAGAGACGAGGAGGAAGAGAACCCGAAAGCTTATTATCTGAGAGAATGATGGAACCAAGAGCCATTTCAGCCAGCCATAGAGGAAATGTTCCTTCTAGTTTGTTCTTCCTCAAATCCAGGAAATTCAAACCCTTCTGTGAAGAAATCCATCCTGGGATCTCTCCTATGAGCCCACAAGACTTCAACGACAGTCGAGAAAGCATTTGCTTCGGTTTTACGCTTTTAATGCTGTTGTTCCAAGTCATCAAATTGCCTCCAATTAGCACATCAACTAGCCCTTTCATATCGAACAGCCATATCGGAACAAGCCCTTCAATGTCTCTAAAGATTTCAAATTGACAATGGTGAGCGGGATTTCCCCCACGAAGCTGTTGTCGCGGATGAACAGTTTCTGCAGCATTTTTAGGTCGCCAATTTCCTCGGGAAACTTTCCGGTAAGAGAATTGCTATCCAACTTCAGCACTCTCAAGTTCCTAAGAAACCTCACATCTGAAGTCAAAGCTCCATCAAGCAAATTGCTGCTCATGTCAAGATATTGAAGGTATCGCAGACGATACATCTGTGGAGGAATCGAACCACTAAACTTATTCGACATTAGGTTAAGGTTAACCATCTTACTTAGATTACCAAACCCTGGCCCTGAGATTTGGCCCTCAAAGTAGTTCGAAGACAAATCGAGTAACATCAAGCTTCTAATGGTGAAAAGTGGCATCAATGCCTTACCATCAAGTGGCAATGGATCATCAGTAATCCTCCAAGCAAGAGAGTAAAGATTAAGACCCTGAACCATCCTTGAGCGAGAATCCGGAGAAGAGCAGACAACTCTTTCCCAATGGCAGCAATCTGTAGTCGAATTCCATGAATCCAAAGAGGAGAAGAGAGGGATGGAACTATTGGGAGAAATTGTAGTAGAGAGAAGGGAGTCTTTAAAGAGGAGGAGGGCTTGCTTTTGTTGATCAGGACATGAGAAAATACAAGGGAGCACGAATAAAAACACTACAAATTGGATAAGAATATGAAGGAAATGAAGATCTTCCATTGGATGCAGCAGAAGAAAGCTTCAAGTGAGAAGAGAAGATACTTTTCCTATGGAGCATTTGAAATTCAGGTACGTTCACAACTTTTATATGAGAAAGGAAACTACTGTTGATGAGTGATGGTTTAATAAGTATTTTTATCTGCCAACATTTCAAAGTCAATGGTCAATGTGAATGGCCATTGATTTGGGGGAAAGTGGGGGAAAATGACAATGTTGGGAGAGAGGTTTACCAATTGACTATGACCTTTGTAAATGGAAAATGG

Coding sequence (CDS)

ATGTTTGAGATCGACTTCGGAACTTCACCAGAAAAATTGTTTCCAGACAACATTAGCAGCATAATAGCATTGGCATTACCAATATTTTCAGGCAGTTCTCCAGAAAAGTTGTTCCTAGACAGGTCGAGCACCGATAGACTTAGCGACTCAAAGAGACGAGGAGGAAGAGAACCCGAAAGCTTATTATCTGAGAGAATGATGGAACCAAGAGCCATTTCAGCCAGCCATAGAGGAAATGTTCCTTCTAGTTTGTTCTTCCTCAAATCCAGGAAATTCAAACCCTTCTGTGAAGAAATCCATCCTGGGATCTCTCCTATGAGCCCACAAGACTTCAACGACAGTCGAGAAAGCATTTGCTTCGGTTTTACGCTTTTAATGCTGTTGTTCCAAGTCATCAAATTGCCTCCAATTAGCACATCAACTAGCCCTTTCATATCGAACAGCCATATCGGAACAAGCCCTTCAATGTCTCTAAAGATTTCAAATTGA

Protein sequence

MFEIDFGTSPEKLFPDNISSIIALALPIFSGSSPEKLFLDRSSTDRLSDSKRRGGREPESLLSERMMEPRAISASHRGNVPSSLFFLKSRKFKPFCEEIHPGISPMSPQDFNDSRESICFGFTLLMLLFQVIKLPPISTSTSPFISNSHIGTSPSMSLKISN
Homology
[Close]
BLAST of Cmc02g0041401 vs. NCBI nr
Match: PSR86913.1 (LRR receptor-like serine/threonine-protein kinase [Actinidia chinensis var. chinensis])

HSP 1 Score: 111.7 bits (278), Expect = 6.0e-21
Identity = 69/134 (51.49%), Postives = 84/134 (62.69%), Query Frame = 0 

Query: 21  IIALALPIFSGSSPEKLFLDRSSTDRLSDSKRRGGREPESLLSERMMEPRAISASHRGNV 80
           +I+LA P+FSG+SPEKLF++R+ TD+L D K R GREP +LLS RM+ P +ISAS     
Sbjct: 1   MISLASPMFSGNSPEKLFIERARTDKLRDWKSRIGREPLNLLSGRMVLPTSISASQSVKF 60

Query: 81  PSSLFFLKSRKFKPFCEEIHPGISPMSPQDFNDSRESICFGFTLLMLLFQVIKLPPISTS 140
           PS LF L SRK   F  EIH GISP  P D  DSR+SI FG T+  LL Q     P +  
Sbjct: 61  PSRLFSLISRKSGVFWVEIHSGISPARPHDSRDSRDSIHFG-TIFTLLLQASLFLPRNKY 120

Query: 141 TSPFISNSHIGTSP 155
            S  I N+    SP
Sbjct: 121 LSALILNNQDRISP 133

[Close]
BLAST of Cmc02g0041401 vs. NCBI nr
Match: KAG0477157.1 (hypothetical protein HPP92_013998 [Vanilla planifolia])

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-05
Identity = 40/105 (38.10%), Postives = 52/105 (49.52%), Query Frame = 0 

Query: 3   EIDFGTSPEKLFPDNISSIIALALPIFSGSSPEKLFLDRSSTDRLSDSKRRGGREPESLL 62
           E D G  P  L    +S++   ALP+F GSSP   FL+RS  +R+  +K  GGR P SL 
Sbjct: 77  ETDSGNEPWNLLLHMMSALKKDALPMFFGSSPSSAFLERSIKNRVLANK-DGGRTPVSLF 136

Query: 63  SERMMEPRAISASHRGNVPSSLFFLKSRKFKPFCEEIHPGISPMS 108
             +       SAS  G +P SL  +KSR F  F      G   +S
Sbjct: 137 PAKNKNEMLRSASQEGILPESLLCVKSRIFSFFSSNRSKGTKRVS 180

[Close]
BLAST of Cmc02g0041401 vs. ExPASy TrEMBL
Match: A0A2R6P8I4 (LRR receptor-like serine/threonine-protein kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc32544 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.9e-21
Identity = 69/134 (51.49%), Postives = 84/134 (62.69%), Query Frame = 0 

Query: 21  IIALALPIFSGSSPEKLFLDRSSTDRLSDSKRRGGREPESLLSERMMEPRAISASHRGNV 80
           +I+LA P+FSG+SPEKLF++R+ TD+L D K R GREP +LLS RM+ P +ISAS     
Sbjct: 1   MISLASPMFSGNSPEKLFIERARTDKLRDWKSRIGREPLNLLSGRMVLPTSISASQSVKF 60

Query: 81  PSSLFFLKSRKFKPFCEEIHPGISPMSPQDFNDSRESICFGFTLLMLLFQVIKLPPISTS 140
           PS LF L SRK   F  EIH GISP  P D  DSR+SI FG T+  LL Q     P +  
Sbjct: 61  PSRLFSLISRKSGVFWVEIHSGISPARPHDSRDSRDSIHFG-TIFTLLLQASLFLPRNKY 120

Query: 141 TSPFISNSHIGTSP 155
            S  I N+    SP
Sbjct: 121 LSALILNNQDRISP 133

The following BLAST results are available for this feature:
BLAST of Cmc02g0041401 vs. NCBI nr
Match NameE-valueIdentityDescription
PSR86913.16.0e-2151.49LRR receptor-like serine/threonine-protein kinase [Actinidia chinensis var. chin... [more]
KAG0477157.17.9e-0538.10hypothetical protein HPP92_013998 [Vanilla planifolia][more]
BLAST of Cmc02g0041401 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc02g0041401 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2R6P8I42.9e-2151.49LRR receptor-like serine/threonine-protein kinase OS=Actinidia chinensis var. ch... [more]
BLAST of Cmc02g0041401 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0041401.1Cmc02g0041401.1mRNA