Cmc02g0040971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0040971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	CMiso1.1chr02: 2653699 .. 2656609 (-)
RNA-Seq Expression	Cmc02g0040971
Synteny	Cmc02g0040971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTAAAATGTGTATATCCACAAGGAAGCCATCTTAGGCCATCCATTTCCCCAAATATACATTCTATAACCCACCAATCTTCTTTTACCTTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCGCTCTCCTCCTTCCCAATCAGGTCAACCCTAATTCACTTTTTTTTTCTTTTCTCTCATTCGTTTCTCCCAATTTCTCATTCATTCTCCTTTGTTCTCTTTTGACTACAGAGAATCCTCTCACAGAGCAAATTTTCCGGGAAACTTCCCAAATCATAAGCTCCGGCGAGATTACTCCGATTTAAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCCGATAGACCCCTCTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGGTTCATTAATTTATAGCTTATTTCACTCGTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGGTTCGTAGAATTGGAGATTTAAAGGTTAAACAATGGCTTTCGCCTCAACTTTAGCAACAGAAACAATTAATTTAGTACATTAATCTTTTTCAAATATGTAATGATTTCATTCTATGGTTTAAAAGTTCATCAAATTTTTTATGTCAAATTTTATTTATTTAAAATGTTCTTGTTTTGTTCTATTAGTTTAGTTTATGATCTTTGTATATATGCTCTCAATTTTATAACAATTTAATCTTCTGCCGAAGAATTCATCAAAATTCAATATCATTTTTTTTTTTACTTTTATGTATACTTTGCATTTTTACAAAACTAACGAGTTTCCATAATTTATATAATACTTACAAAATTTAAACTATAAATATTAAAAGGTTACATTGGAAAAATAAAAGTTTAAAAACTAGATCGTTACAGTTACAGTTTAAAGACTAAATTGTTACTTTTATAAAAGTTTTAGTGCAATTAGATTGAATTTCTAAACGTTTAGAAATAAACGTTTATAAACGTTTTTATTCTACTCGAAAAGTATGCACTTTTAAGTACTAAGAGTGATTGTTTAACTTTTGTTTGTTCCTTCGTAGCCTTCCCGGCGATTTTGGCTTTGATCCGCTTGGATTGGGTATGCTACTTTCCCTTTTTCTCTTTGATTCAAATTTAGTATTACTTTTAAAATACTACTTTTGGTTCTTCTCCTTGGAATAGAAACGTTGGTTGAGTTTGTGAGATATTTTCTTTTAGGTAGGAAATATGGCAGCAGGAGTGTGAGTATGAAAAGTTAAGAGTTTGTTGGAGAACCGAAATATAATATGGATTATTAAAAATAGGTGTCGGGATGTGTGAGGAATCGAAGACGAAGAAACGAAAATGAAATCGTAGAACATGAAAACAACAAAGAAAAAGATGATTGGATTGAAAACTGTATAAACAAAATGAGTTTTCTATAACAAACATATTTAAATTGAAAACTTTCAATCCAAACTAAACTCATAATGAATGTTTCATTACGGACTCTCAAATAGATTTATAGTGACTATTTAATGGGCTTAAGCAAACCACAGTCTATAGTATATCAAACAATAGCTTGAGTTTATAACTTGTATTTTATAGTGTTTTTATCCTTTTGAAAATCAATTTTTACAAATAGAATTGGAATCGTCAATCAAACTCATTTTTTGTCAAACTCAATACAAACATCAAAGTGATAATTGAAAATGTGGGTGTCAGGTTCGGACCCAGAGACACTAAAATGGTTCGCTCAAGCGGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCCGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAATTTCTCATGGTACGACGCCGGATCTCGAGAATATTTTGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCCGACTTGGTCAACCCGGGAAGTGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGTAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCTATGATGTGGGGGAGGGGGTCGCCGGAGCCGGTGATGGTGCTCAGGACTAAAGAGATTAAGAATGGGAGGTTGGCTATGTTGGCCTTCGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCCCTTGAGAATCTTGCTGCACACGTCGCAGATCCCGGCCATTGCAATATCTTTTCGGTACGATTATCTTCCCTAATCAATAATGTGTTTCTCCTATCAGTACTATTGATTGCTAATAATAGAAATCCATTGATGTCTATCGTCAATGAAATCTAATATTTTGTAATATGTCATAAATATTTTAATTTATTTTATTATATTTAAAAGTATTTTTTTATTTGTAATTTTTTTTTTATTTTTGAAAAGGAATATAAATAAAAACCATGATAGAAAAGAGCCTAAACTAGTACACTTTTGAAAATTCATAACTAAAATTAAAATAATTAGTTGAATAAGGTCAATTTGTTATTTAAGTTCAATTCACACGACTTGAAAATATGTTGAATTGGTATATAGTTTTTAATTTTGTATCTAATAAATAAATTTTAATTTTGAGTTCGATAAGGGCTTATGAGAATCGAGTATTTTTTTTTCTTTTATAAAATTTGTTAACTTATTATTATTATATTTTTTTTTTGCAGGCATTTACTTCTGGTTCGGGTTGAAATCGAAACTTTCATTTTGGTTCGGTTGAGATGGTGAAGTGTGTACATAAAGCAAAGAGATGAGAAGAATTTGTGATGGTTTACTATATATAACCCTATAAGTACTATTCAAACTCTTAAATGATAGATTCCTATCTTAAATCATTGAATGACGATCTAAAAATTTACGTAGATGAGTGAAAACAAATTTGATATCAT

mRNA sequence

GGTTTAAAATGTGTATATCCACAAGGAAGCCATCTTAGGCCATCCATTTCCCCAAATATACATTCTATAACCCACCAATCTTCTTTTACCTTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCGCTCTCCTCCTTCCCAATCAGAGAATCCTCTCACAGAGCAAATTTTCCGGGAAACTTCCCAAATCATAAGCTCCGGCGAGATTACTCCGATTTAAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCCGATAGACCCCTCTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTTGATCCGCTTGGATTGGGTTCGGACCCAGAGACACTAAAATGGTTCGCTCAAGCGGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCCGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAATTTCTCATGGTACGACGCCGGATCTCGAGAATATTTTGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCCGACTTGGTCAACCCGGGAAGTGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGTAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCTATGATGTGGGGGAGGGGGTCGCCGGAGCCGGTGATGGTGCTCAGGACTAAAGAGATTAAGAATGGGAGGTTGGCTATGTTGGCCTTCGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCCCTTGAGAATCTTGCTGCACACGTCGCAGATCCCGGCCATTGCAATATCTTTTCGGCATTTACTTCTGGTTCGGGTTGAAATCGAAACTTTCATTTTGGTTCGGTTGAGATGGTGAAGTGTGTACATAAAGCAAAGAGATGAGAAGAATTTGTGATGGTTTACTATATATAACCCTATAAGTACTATTCAAACTCTTAAATGATAGATTCCTATCTTAAATCATTGAATGACGATCTAAAAATTTACGTAGATGAGTGAAAACAAATTTGATATCAT

Coding sequence (CDS)

ATGGCTCTCTCCATTTCTTCCACTGCGCTCTCCTCCTTCCCAATCAGAGAATCCTCTCACAGAGCAAATTTTCCGGGAAACTTCCCAAATCATAAGCTCCGGCGAGATTACTCCGATTTAAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCCGATAGACCCCTCTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTTCCCGGCGATTTTGGCTTTGATCCGCTTGGATTGGGTTCGGACCCAGAGACACTAAAATGGTTCGCTCAAGCGGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCCGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAATTTCTCATGGTACGACGCCGGATCTCGAGAATATTTTGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCCGACTTGGTCAACCCGGGAAGTGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGTAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCTATGATGTGGGGGAGGGGGTCGCCGGAGCCGGTGATGGTGCTCAGGACTAAAGAGATTAAGAATGGGAGGTTGGCTATGTTGGCCTTCGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCCCTTGAGAATCTTGCTGCACACGTCGCAGATCCCGGCCATTGCAATATCTTTTCGGCATTTACTTCTGGTTCGGGTTGA

Protein sequence

MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFTSGSG

Homology

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BLAST of Cmc02g0040971 vs. NCBI nr
Match: XP_008450947.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis melo] >KAA0055760.1 photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 564.3 bits (1453), Expect = 5.5e-157
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60
           MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL
Sbjct: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60

Query: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120
           WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF
Sbjct: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120

Query: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180
           ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK
Sbjct: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180

Query: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240
           KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP
Sbjct: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240

Query: 241 LENLAAHVADPGHCNIFSAFTSGSG 266
           LENLAAHVADPGHCNIFSAFTSGSG
Sbjct: 241 LENLAAHVADPGHCNIFSAFTSGSG 265

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BLAST of Cmc02g0040971 vs. NCBI nr
Match: XP_004144043.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis sativus] >KGN66318.1 hypothetical protein Csa_007477 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 3.7e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 266
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 267

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BLAST of Cmc02g0040971 vs. NCBI nr
Match: TYK10011.1 (photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 551.6 bits (1420), Expect = 3.7e-153
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60
           MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL
Sbjct: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60

Query: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120
           WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF
Sbjct: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120

Query: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180
           ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK
Sbjct: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180

Query: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240
           KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP
Sbjct: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240

Query: 241 LENLAAHVADPGHCNIFS 259
           LENLAAHVADPGHCNIFS
Sbjct: 241 LENLAAHVADPGHCNIFS 258

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BLAST of Cmc02g0040971 vs. NCBI nr
Match: XP_022967968.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 512.3 bits (1318), Expect = 2.5e-141
Identity = 242/266 (90.98%), Postives = 247/266 (92.86%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSH---RANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPD 60
           MALSISSTALSS PIRESSH     NFPG FP + LRR  S L AAKSGVSSVCEPLPPD
Sbjct: 17  MALSISSTALSSLPIRESSHSHRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLPPD 76

Query: 61  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLP 120
           RPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGILLP
Sbjct: 77  RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLP 136

Query: 121 EWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKL 180
           EWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPG VDVDLKL
Sbjct: 137 EWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDLKL 196

Query: 181 PHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG 240
           PHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG
Sbjct: 197 PHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG 256

Query: 241 QGPLENLAAHVADPGHCNIFSAFTSG 264
           QGPLENLAAHVADPGHCNIFSAF+SG
Sbjct: 257 QGPLENLAAHVADPGHCNIFSAFSSG 282

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BLAST of Cmc02g0040971 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 511.5 bits (1316), Expect = 4.3e-141
Identity = 241/267 (90.26%), Postives = 248/267 (92.88%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSH----RANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPP 60
           MALSISSTALS+ PIRESSH      NFPG FP + LRR  + L AAKSGVSSVCEPLPP
Sbjct: 1   MALSISSTALSTLPIRESSHSHHRALNFPGKFPKYNLRRGSTHLNAAKSGVSSVCEPLPP 60

Query: 61  DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILL 120
           DRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGILL
Sbjct: 61  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILL 120

Query: 121 PEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLK 180
           PEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPGSVDVDLK
Sbjct: 121 PEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGSVDVDLK 180

Query: 181 LPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240
           LPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT
Sbjct: 181 LPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYT 240

Query: 241 GQGPLENLAAHVADPGHCNIFSAFTSG 264
           GQGPLENLAAHVADPGHCNIFSAF+SG
Sbjct: 241 GQGPLENLAAHVADPGHCNIFSAFSSG 267

[Close]

BLAST of Cmc02g0040971 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.4e-110
Identity = 190/271 (70.11%), Postives = 212/271 (78.23%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNH---------KLRRDYSDLKAAKSGVSSVC 60
           MA +I+S   S+  +  S+ R   P     H         +L R+   +  A   VSSVC
Sbjct: 1   MAFAIASALTSTLTL--STSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVC 60

Query: 61  EPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAV 120
           EPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+TLKWFAQAEL+H+RWAMLAV
Sbjct: 61  EPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAV 120

Query: 121 AGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSV 180
            GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+ LMGW EGRRWADL+ PGSV
Sbjct: 121 TGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSV 180

Query: 181 DVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWF 240
           D++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+G  F
Sbjct: 181 DIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 240

Query: 241 QAIYTGQGPLENLAAHVADPGHCNIFSAFTS 263
           QA YT Q P+ENL AH+ADPGHCN+FSAFTS
Sbjct: 241 QATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of Cmc02g0040971 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 3.7e-87
Identity = 139/206 (67.48%), Postives = 163/206 (79.13%), Query Frame = 0


Query: 56  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 115
           PDRPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE+LKW AQAEL+H+RWAML  AGI 
Sbjct: 63  PDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIF 122

Query: 116 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 175
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PG V+ D 
Sbjct: 123 IPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDP 182

Query: 176 KLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 235
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 183 IFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIY 242

Query: 236 TGQGPLENLAAHVADPGHCNIFSAFT 262
           TG GP++NL AH+ADPGH  IF+AF+
Sbjct: 243 TGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Cmc02g0040971 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-86
Identity = 140/225 (62.22%), Postives = 167/225 (74.22%), Query Frame = 0


Query: 37  YSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWF 96
           YS    A+S  ++VC    PDRPLWFPGS+PP WLDGSLPGDFGFDPLGL SDPE+L+W 
Sbjct: 45  YSTTPTARS-ATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN 104

Query: 97  AQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGW 156
            QAEL+H RWAML  AGI +PE    +G++   SWY AG +EYF D TTL + +L L+GW
Sbjct: 105 QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGW 164

Query: 157 VEGRRWADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEI 216
            EGRRWAD++ PG V+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEI
Sbjct: 165 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 224

Query: 217 KNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFT 262
           KNGRLAMLA +G WFQ IYTG GP++NL AH+ADPGH  IF+AF+
Sbjct: 225 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Cmc02g0040971 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 4.1e-86
Identity = 136/206 (66.02%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 56  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 115
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 116 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 175
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 176 KLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 235
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 236 TGQGPLENLAAHVADPGHCNIFSAFT 262
           TG GP++NL AH+ADPGH  IF+AFT
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Cmc02g0040971 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 3.1e-54
Identity = 109/229 (47.60%), Postives = 138/229 (60.26%), Query Frame = 0


Query: 32  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 91
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 92  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 151
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 152 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVL 211
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 212 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 261
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I   F
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

[Close]

BLAST of Cmc02g0040971 vs. ExPASy TrEMBL
Match: A0A5A7UKU4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001460 PE=3 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.7e-157
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60
           MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL
Sbjct: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60

Query: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120
           WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF
Sbjct: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120

Query: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180
           ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK
Sbjct: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180

Query: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240
           KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP
Sbjct: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240

Query: 241 LENLAAHVADPGHCNIFSAFTSGSG 266
           LENLAAHVADPGHCNIFSAFTSGSG
Sbjct: 241 LENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of Cmc02g0040971 vs. ExPASy TrEMBL
Match: A0A1S3BQD6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492384 PE=3 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.7e-157
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60
           MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL
Sbjct: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60

Query: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120
           WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF
Sbjct: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120

Query: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180
           ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK
Sbjct: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180

Query: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240
           KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP
Sbjct: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240

Query: 241 LENLAAHVADPGHCNIFSAFTSGSG 266
           LENLAAHVADPGHCNIFSAFTSGSG
Sbjct: 241 LENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of Cmc02g0040971 vs. ExPASy TrEMBL
Match: A0A5D3CDV1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001420 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.8e-153
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60
           MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL
Sbjct: 1   MALSISSTALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDRPL 60

Query: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120
           WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF
Sbjct: 61  WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWF 120

Query: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180
           ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK
Sbjct: 121 ESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHK 180

Query: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240
           KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP
Sbjct: 181 KKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGP 240

Query: 241 LENLAAHVADPGHCNIFS 259
           LENLAAHVADPGHCNIFS
Sbjct: 241 LENLAAHVADPGHCNIFS 258

[Close]

BLAST of Cmc02g0040971 vs. ExPASy TrEMBL
Match: A0A0A0LX05 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G597160 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.8e-153
Identity = 260/267 (97.38%), Postives = 263/267 (98.50%), Query Frame = 0


Query: 1   MALSISS--TALSSFPIRESSHRANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60
           MALSISS  TALSSFPIR+S HR+NFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR
Sbjct: 1   MALSISSTATALSSFPIRDSYHRSNFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPDR 60

Query: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120
           PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE
Sbjct: 61  PLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPE 120

Query: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180
           WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP
Sbjct: 121 WFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLP 180

Query: 181 HKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240
           HKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ
Sbjct: 181 HKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQ 240

Query: 241 GPLENLAAHVADPGHCNIFSAFTSGSG 266
           GPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 241 GPLENLAAHVADPGHCNIFSAFSSGSG 267

[Close]

BLAST of Cmc02g0040971 vs. ExPASy TrEMBL
Match: A0A6J1HWP6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467340 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 242/266 (90.98%), Postives = 247/266 (92.86%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSH---RANFPGNFPNHKLRRDYSDLKAAKSGVSSVCEPLPPD 60
           MALSISSTALSS PIRESSH     NFPG FP + LRR  S L AAKSGVSSVCEPLPPD
Sbjct: 17  MALSISSTALSSLPIRESSHSHRALNFPGKFPKYNLRRGSSHLNAAKSGVSSVCEPLPPD 76

Query: 61  RPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLP 120
           RPLWFPGS+PPEWLDGSLPGDFGFDPLGLGSDPE LKWFAQAELMHARWAMLAVAGILLP
Sbjct: 77  RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLP 136

Query: 121 EWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKL 180
           EWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRRWAD+VNPG VDVDLKL
Sbjct: 137 EWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRRWADMVNPGCVDVDLKL 196

Query: 181 PHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG 240
           PHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG
Sbjct: 197 PHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTG 256

Query: 241 QGPLENLAAHVADPGHCNIFSAFTSG 264
           QGPLENLAAHVADPGHCNIFSAF+SG
Sbjct: 257 QGPLENLAAHVADPGHCNIFSAFSSG 282

[Close]

BLAST of Cmc02g0040971 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 399.8 bits (1026), Expect = 1.7e-111
Identity = 190/271 (70.11%), Postives = 212/271 (78.23%), Query Frame = 0


Query: 1   MALSISSTALSSFPIRESSHRANFPGNFPNH---------KLRRDYSDLKAAKSGVSSVC 60
           MA +I+S   S+  +  S+ R   P     H         +L R+   +  A   VSSVC
Sbjct: 1   MAFAIASALTSTLTL--STSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVC 60

Query: 61  EPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAV 120
           EPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDP+TLKWFAQAEL+H+RWAMLAV
Sbjct: 61  EPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAV 120

Query: 121 AGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSV 180
            GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+ LMGW EGRRWADL+ PGSV
Sbjct: 121 TGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSV 180

Query: 181 DVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWF 240
           D++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRLAMLAF+G  F
Sbjct: 181 DIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCF 240

Query: 241 QAIYTGQGPLENLAAHVADPGHCNIFSAFTS 263
           QA YT Q P+ENL AH+ADPGHCN+FSAFTS
Sbjct: 241 QATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of Cmc02g0040971 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 319.3 bits (817), Expect = 2.9e-87
Identity = 136/206 (66.02%), Postives = 161/206 (78.16%), Query Frame = 0


Query: 56  PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGIL 115
           PDRP+WFPGS+PPEWLDGSLPGDFGFDPLGL SDP++LKW  QAE++H RWAML  AGI 
Sbjct: 50  PDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIF 109

Query: 116 LPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDL 175
           +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRRWAD++ PGSV+ D 
Sbjct: 110 IPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDP 169

Query: 176 KLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIY 235
             P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRLAMLA +G WFQ IY
Sbjct: 170 VFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIY 229

Query: 236 TGQGPLENLAAHVADPGHCNIFSAFT 262
           TG GP++NL AH+ADPGH  IF+AFT
Sbjct: 230 TGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Cmc02g0040971 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-55
Identity = 109/229 (47.60%), Postives = 138/229 (60.26%), Query Frame = 0


Query: 32  KLRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE 91
           +L RD S      S  +S  + +   +  W PG + P++L GSL GD GFDPLGL  DPE
Sbjct: 29  RLNRDLSFTSIGSSAKTSSFK-VEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPE 88

Query: 92  TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQL 151
            LKWF QAEL++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V + 
Sbjct: 89  NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEF 148

Query: 152 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVL 211
            L  +VE RRW D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    
Sbjct: 149 ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEA 208

Query: 212 RTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 261
           + KE+ NGRLAMLAF+G   Q   TG+GP ENL  H++DP H  I   F
Sbjct: 209 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

[Close]

BLAST of Cmc02g0040971 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-47
Identity = 104/255 (40.78%), Postives = 150/255 (58.82%), Query Frame = 0


Query: 21  RANFPGNFPNHK------LRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGS 80
           R    G F +H+      + R  S +KAA  G++     +  +R  W PG +PP +LDG+
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGN 65

Query: 81  LPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDA 140
           L GD+GFDPLGLG DPE+LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+A
Sbjct: 66  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 125

Query: 141 GSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKVK---ADVGYP 200
           G+ ++ FA   TL+V Q  LMG+ E +R+ D V+PGS   +       +      + GYP
Sbjct: 126 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 185

Query: 201 GGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVAD 260
           GG   +P+   +   +     + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++
Sbjct: 186 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 245

Query: 261 PGHCNIF-SAFTSGS 265
           P H  I  + FTS S
Sbjct: 246 PWHKTIIQTLFTSTS 256

[Close]

BLAST of Cmc02g0040971 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-47
Identity = 104/255 (40.78%), Postives = 150/255 (58.82%), Query Frame = 0


Query: 21  RANFPGNFPNHK------LRRDYSDLKAAKSGVSSVCEPLPPDRPLWFPGSSPPEWLDGS 80
           R    G F +H+      + R  S +KAA  G++     +  +R  W PG +PP +LDG+
Sbjct: 6   RGGITGGFLHHRRDASSVITRRISSVKAAGGGINPT---VAVERATWLPGLNPPPYLDGN 65

Query: 81  LPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDA 140
           L GD+GFDPLGLG DPE+LKW+ QAEL+H+R+AML VAGIL  +   + G+     WY+A
Sbjct: 66  LAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEA 125

Query: 141 GSREY-FADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKVK---ADVGYP 200
           G+ ++ FA   TL+V Q  LMG+ E +R+ D V+PGS   +       +      + GYP
Sbjct: 126 GAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEAALEGLEPGYP 185

Query: 201 GGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVAD 260
           GG   +P+   +   +     + KEIKNGRLAM+A +G + QA  T  GP++NL  H+++
Sbjct: 186 GGPLLNPLGLAK-DVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 245

Query: 261 PGHCNIF-SAFTSGS 265
           P H  I  + FTS S
Sbjct: 246 PWHKTIIQTLFTSTS 256

The following BLAST results are available for this feature:

BLAST of Cmc02g0040971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450947.1	5.5e-157	100.00	PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucum...	[more]
XP_004144043.1	3.7e-153	97.38	photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis sativus]...	[more]
TYK10011.1	3.7e-153	100.00	photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa]	[more]
XP_022967968.1	2.5e-141	90.98	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
XP_022929243.1	4.3e-141	90.26	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]

BLAST of Cmc02g0040971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCQ4	2.4e-110	70.11	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P13869	3.7e-87	67.48	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
P10708	1.4e-86	62.22	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q9SYW8	4.1e-86	66.02	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P27521	3.1e-54	47.60	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Cmc02g0040971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKU4	2.7e-157	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BQD6	2.7e-157	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3CDV1	1.8e-153	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LX05	1.8e-153	97.38	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1HWP6	1.2e-141	90.98	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Cmc02g0040971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19150.1	1.7e-111	70.11	photosystem I light harvesting complex gene 6	[more]
AT3G61470.1	2.9e-87	66.02	photosystem I light harvesting complex gene 2	[more]
AT3G47470.1	2.2e-55	47.60	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT1G45474.1	1.0e-47	40.78	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	1.0e-47	40.78	photosystem I light harvesting complex gene 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..233 e-value: 4.9E-53 score: 180.0
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 68..253 e-value: 1.8E-69 score: 235.4
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..260
None	No IPR available	PANTHER	PTHR21649:SF5	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..260
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 57..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0040971.1	Cmc02g0040971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding