Cmc02g0040611 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0040611
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II PsbX
Location	CMiso1.1chr02: 2435386 .. 2436066 (+)
RNA-Seq Expression	Cmc02g0040611
Synteny	Cmc02g0040611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAGATTTCAACCTCACCAAAAATCCCCAATTTCCACCGCTTCTACTTCTCACTGGCCCACTCCCAATTCCCAAAAATCCCCTAATCCCCAATTCACATCTTCCTCAATTTTCCACAAAATCCTCAATTCCCTTCACCTCCATCCATTTCATCCCATCAATGGCTTCCACTTCCGCTGTTTCAATGGCCTTACCATTCACCCACGCCACCCACAAACCACTCTCCAACGACGCTTTCTTCAACCCATTGCCTTCTTTTAAGTCCCGCAAGCCCATCGCTGCTGCTCCCATTTCCAACGGAAGGATCGTCGCCGTTCGATCGTCGTTGAAGGAGAAGGCTGTTGCTGGAATCACGGCTGCTGCTCTGGCCGCGTCGATGGTGATCCCAGAGGTTGCCGAGGCTGCCGGATCCGGAGTGTCGCCTTCGTTGAAGAACTTCTTGCTAAGTATTGCGGCAGGCGGAGCGGTGGTGGTGGCGATATTTGGGGCGGTCATCGGCGTCGCGAACTTTGACCCGGTGAAGCGAAGCTGAGTGGAAATGTGAAGTAAAAGAAAAAAAAAAAGAAAGTAAATTGTAATTTTTGTGTCTTTCGTTTATTTAATCGTTGTGTTTGTGGCAATGTATGGATTTTTTAGCTGTAAACCTTTTTCATTCAACTCTAAATTTCTTCATCAATCTCT

mRNA sequence

TCAAGATTTCAACCTCACCAAAAATCCCCAATTTCCACCGCTTCTACTTCTCACTGGCCCACTCCCAATTCCCAAAAATCCCCTAATCCCCAATTCACATCTTCCTCAATTTTCCACAAAATCCTCAATTCCCTTCACCTCCATCCATTTCATCCCATCAATGGCTTCCACTTCCGCTGTTTCAATGGCCTTACCATTCACCCACGCCACCCACAAACCACTCTCCAACGACGCTTTCTTCAACCCATTGCCTTCTTTTAAGTCCCGCAAGCCCATCGCTGCTGCTCCCATTTCCAACGGAAGGATCGTCGCCGTTCGATCGTCGTTGAAGGAGAAGGCTGTTGCTGGAATCACGGCTGCTGCTCTGGCCGCGTCGATGGTGATCCCAGAGGTTGCCGAGGCTGCCGGATCCGGAGTGTCGCCTTCGTTGAAGAACTTCTTGCTAAGTATTGCGGCAGGCGGAGCGGTGGTGGTGGCGATATTTGGGGCGGTCATCGGCGTCGCGAACTTTGACCCGGTGAAGCGAAGCTGAGTGGAAATGTGAAGTAAAAGAAAAAAAAAAAGAAAGTAAATTGTAATTTTTGTGTCTTTCGTTTATTTAATCGTTGTGTTTGTGGCAATGTATGGATTTTTTAGCTGTAAACCTTTTTCATTCAACTCTAAATTTCTTCATCAATCTCT

Coding sequence (CDS)

ATGGCTTCCACTTCCGCTGTTTCAATGGCCTTACCATTCACCCACGCCACCCACAAACCACTCTCCAACGACGCTTTCTTCAACCCATTGCCTTCTTTTAAGTCCCGCAAGCCCATCGCTGCTGCTCCCATTTCCAACGGAAGGATCGTCGCCGTTCGATCGTCGTTGAAGGAGAAGGCTGTTGCTGGAATCACGGCTGCTGCTCTGGCCGCGTCGATGGTGATCCCAGAGGTTGCCGAGGCTGCCGGATCCGGAGTGTCGCCTTCGTTGAAGAACTTCTTGCTAAGTATTGCGGCAGGCGGAGCGGTGGTGGTGGCGATATTTGGGGCGGTCATCGGCGTCGCGAACTTTGACCCGGTGAAGCGAAGCTGA

Protein sequence

MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPVKRS

Homology

[Close]

BLAST of Cmc02g0040611 vs. NCBI nr
Match: XP_008450907.1 (PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 9.1e-54
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120
           VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

[Close]

BLAST of Cmc02g0040611 vs. NCBI nr
Match: XP_031735956.1 (uncharacterized protein LOC116401689 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 114/123 (92.68%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120
           VAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAGG VVVAI GAVIGVANFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

[Close]

BLAST of Cmc02g0040611 vs. NCBI nr
Match: XP_038878912.1 (uncharacterized protein LOC120071001 [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 115/123 (93.50%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MASTSA+SMALP T+ATHKPLSNDAFFNPLPSFKSRK IAAAP SNGRIVAVRSSLKEKA
Sbjct: 1   MASTSALSMALPLTYATHKPLSNDAFFNPLPSFKSRKAIAAAPKSNGRIVAVRSSLKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120
           VAGITAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAGGAVVVAI GAVIGVANFDPV
Sbjct: 61  VAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

[Close]

BLAST of Cmc02g0040611 vs. NCBI nr
Match: KAE8653441.1 (hypothetical protein Csa_007456 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 8.2e-47
Identity = 110/119 (92.44%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDP 120
           VAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAGG VVVAI GAVIGVANFDP
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDP 119

[Close]

BLAST of Cmc02g0040611 vs. NCBI nr
Match: KAG7023687.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 8.8e-41
Identity = 103/125 (82.40%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLP---SFKSRKPIAAAPISNGRIVAVRSSLK 60
           MASTSAVS+ALP T+ATHK LSN AFFNPLP   S +SRK IAAAP SNG +VAVRSSLK
Sbjct: 818 MASTSAVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSNGSLVAVRSSLK 877

Query: 61  EKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANF 120
           EKA+ G+TAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAGG VVVAI GAVIGV+NF
Sbjct: 878 EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 937

Query: 121 DPVKR 123
           DPVKR
Sbjct: 938 DPVKR 942

[Close]

BLAST of Cmc02g0040611 vs. ExPASy TrEMBL
Match: A0A1S3BRD2 (uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120
           VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV
Sbjct: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

[Close]

BLAST of Cmc02g0040611 vs. ExPASy TrEMBL
Match: A0A0A0LWL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595840 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 114/123 (92.68%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKA
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120
           VAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAGG VVVAI GAVIGVANFDPV
Sbjct: 61  VAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVANFDPV 120

Query: 121 KRS 124
           KRS
Sbjct: 121 KRS 123

[Close]

BLAST of Cmc02g0040611 vs. ExPASy TrEMBL
Match: A0A6J1H8G2 (uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC111461452 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.5e-41
Identity = 102/125 (81.60%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLP---SFKSRKPIAAAPISNGRIVAVRSSLK 60
           MASTS VS+ALP T+ATHK LSN AFFNPLP   S +SRK IAAAP S+GR+VAVRSSLK
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAIAAAPTSSGRLVAVRSSLK 60

Query: 61  EKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANF 120
           EKA+ G+TAAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAGG VVVAI GAVIGV+NF
Sbjct: 61  EKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

Query: 121 DPVKR 123
           DPVKR
Sbjct: 121 DPVKR 125

[Close]

BLAST of Cmc02g0040611 vs. ExPASy TrEMBL
Match: A0A6J1J9Y5 (uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.1e-40
Identity = 101/125 (80.80%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPL---PSFKSRKPIAAAPISNGRIVAVRSSLK 60
           MASTS VS+ALP T ATHK LSN AFFNPL   PS + RK IAAAP SNGR+VAVRSSLK
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAIAAAPTSNGRLVAVRSSLK 60

Query: 61  EKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANF 120
           EKA+ G++AAAL ASMVIPEVAEAAG GVSPSLKNFLLSIAAGG VVVAI GAVIGV+NF
Sbjct: 61  EKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVSNF 120

Query: 121 DPVKR 123
           DPVKR
Sbjct: 121 DPVKR 125

[Close]

BLAST of Cmc02g0040611 vs. ExPASy TrEMBL
Match: A0A6J1HV97 (uncharacterized protein LOC111467755 OS=Cucurbita maxima OX=3661 GN=LOC111467755 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 95/122 (77.87%), Postives = 104/122 (85.25%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRIVAVRSSLKEKA 60
           MAS  AVSMALP T+A+ K LSNDAFFNPLPS +SRK I AAP    R+V V SSLKEKA
Sbjct: 1   MASAPAVSMALPLTYASQKRLSNDAFFNPLPS-RSRKAIPAAP----RLVVVHSSLKEKA 60

Query: 61  VAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFDPV 120
           V G+TAAAL+A+MVIPEVAEAAG GVSPSLKNFLLSIAAGG VV+AI GAVIGV+NFDPV
Sbjct: 61  VTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSNFDPV 117

Query: 121 KR 123
           KR
Sbjct: 121 KR 117

[Close]

BLAST of Cmc02g0040611 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFKSRKPIAAAPISNGRI--VAVRSSLKE 60
           MASTSA+S+  P       P     F  PLP     KP  A   + GR   + V++   +
Sbjct: 1   MASTSAMSLVTPLNQTRSSP-----FLKPLP----LKPSKALVATGGRAQRLQVKALKMD 60

Query: 61  KAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVANFD 120
           KA+ GI+AAAL ASMVIPE+AEAAGSG+SPSLKNFLLSIA+GG V+  I G V+GV+NFD
Sbjct: 61  KALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFD 116

Query: 121 PVKRS 124
           PVKR+
Sbjct: 121 PVKRT 116

The following BLAST results are available for this feature:

BLAST of Cmc02g0040611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450907.1	9.1e-54	100.00	PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]	[more]
XP_031735956.1	4.0e-49	92.68	uncharacterized protein LOC116401689 [Cucumis sativus]	[more]
XP_038878912.1	1.5e-48	93.50	uncharacterized protein LOC120071001 [Benincasa hispida]	[more]
KAE8653441.1	8.2e-47	92.44	hypothetical protein Csa_007456 [Cucumis sativus]	[more]
KAG7023687.1	8.8e-41	82.40	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Cmc02g0040611 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc02g0040611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRD2	4.4e-54	100.00	uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=...	[more]
A0A0A0LWL3	1.9e-49	92.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595840 PE=4 SV=1	[more]
A0A6J1H8G2	9.5e-41	81.60	uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC1114614...	[more]
A0A6J1J9Y5	8.1e-40	80.80	uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883...	[more]
A0A6J1HV97	1.2e-35	77.87	uncharacterized protein LOC111467755 OS=Cucurbita maxima OX=3661 GN=LOC111467755...	[more]

BLAST of Cmc02g0040611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	1.8e-23	54.40	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 86..123 e-value: 1.8E-15 score: 56.6
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 85..123 e-value: 4.2E-10 score: 41.2
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0040611.1	Cmc02g0040611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane