Cmc02g0039581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0039581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Programmed cell death protein 4-like
Location	CMiso1.1chr02: 1551969 .. 1553072 (-)
RNA-Seq Expression	Cmc02g0039581
Synteny	Cmc02g0039581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGTACTTTTAGCAAAAAAGAAACATTATCCGGTCATACGGATCGTAGCATACACTCGAGGGTAGAGGAACATTTTCACCGCAAACCACGGCAATCTTATCCGCTTGAAGTCGTCAAATCAGACAAGCACACATCATCACCAACGCCCACAGATCTCCATGATCTTCACCCTCTCCCATTTATATAAAACCCTTTGTTCGATTCAATCTTCACTCGTACTCATCCACTGTTAAGAAACGAATCACCGAATCGGCGGTAAGAAGATGAAGAAATCAGAGAAGAGTTCGAAGCCAACCGGAAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACAGGAATGAACGGATCACCGAAGAAAGGAGGCCATGGCGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGTGGCGGTGGCGGTTTGATTAGGTCATTTTCGAATCTGAGATTTGTAAATAGTCTTCATGAAAACGGTAAAAATCCGTGGTTTTTCCATTTGAATAAAATCACGCAGCAGCATCGTTTTGTACAGTTTTCTTGATATTTATAAATTTCATTGTCGATCTTCGTTCTTTCGTGTTGAAGAAAAATGAAGAAGAAGAAGAAGAAGAAGAAAAAAAAAAGTGGGGAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAAACTCGTCTTCAGTGATTGATGAACAGAAGATTGAAGAATGGGAAGGAAATTAGTCTTTTAATAGTTAAATTTGTCGGTCAAACTTGGGGATCACGGTGGAATTAAAACTTGAGTGGTGATGATCAAGTAAAGTTCTTGGGGTGTGCATTTTGATGTGATGCGAGTGTGTAAGCTAAAGGATAAAATCGTGCATGTCAATATTAGGATATGGAATCATTATACTAAAGCTTGAGTTATAAGTTATAATGCTTCGCTTATACAAATCAACAAATTTATATAATTAATTTAGATTAATAACTAACCTATTTTTTTTTAAATAACAAAAATTAAAACATTTGTATTTATAAATATAGTAAAATATTAATGACT

mRNA sequence

AATTGTACTTTTAGCAAAAAAGAAACATTATCCGGTCATACGGATCGTAGCATACACTCGAGGGTAGAGGAACATTTTCACCGCAAACCACGGCAATCTTATCCGCTTGAAGTCGTCAAATCAGACAAGCACACATCATCACCAACGCCCACAGATCTCCATGATCTTCACCCTCTCCCATTTATATAAAACCCTTTGTTCGATTCAATCTTCACTCGTACTCATCCACTGTTAAGAAACGAATCACCGAATCGGCGGTAAGAAGATGAAGAAATCAGAGAAGAGTTCGAAGCCAACCGGAAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACAGGAATGAACGGATCACCGAAGAAAGGAGGCCATGGCGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGTGGCGGTGGCGGTTTGATTAGGTCATTTTCGAATCTGAGATTTGTAAATAGTCTTCATGAAAACGAAAAATGAAGAAGAAGAAGAAGAAGAAGAAAAAAAAAAGTGGGGAAATGTGTGTACCTCAAAGATCTGGAAATTTGAAAACTCGTCTTCAGTGATTGATGAACAGAAGATTGAAGAATGGGAAGGAAATTAGTCTTTTAATAGTTAAATTTGTCGGTCAAACTTGGGGATCACGGTGGAATTAAAACTTGAGTGGTGATGATCAAGTAAAGTTCTTGGGGTGTGCATTTTGATGTGATGCGAGTGTGTAAGCTAAAGGATAAAATCGTGCATGTCAATATTAGGATATGGAATCATTATACTAAAGCTTGAGTTATAAGTTATAATGCTTCGCTTATACAAATCAACAAATTTATATAATTAATTTAGATTAATAACTAACCTATTTTTTTTTAAATAACAAAAATTAAAACATTTGTATTTATAAATATAGTAAAATATTAATGACT

Coding sequence (CDS)

ATGAAGAAATCAGAGAAGAGTTCGAAGCCAACCGGAAAATCCGAAGTTAGGAAGGATCGGAAATCGGCAACAGGAATGAACGGATCACCGAAGAAAGGAGGCCATGGCGGCAAGTTCACTTGGTCGGGAGACGGTTACTCTCCGGCTGAGATCGGGTTCAAGGCTGAAGTTATGGACGTGAAGGACCCTAACTTTGAAGATCTGGAGGAGGCGGTGGCGGTGGCGGTTTGA

Protein sequence

MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDVKDPNFEDLEEAVAVAV

Homology

[Close]

BLAST of Cmc02g0039581 vs. NCBI nr
Match: TYK10141.1 (programmed cell death protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAVAVAV 77
          KDPNFEDLEEAVAVAV
Sbjct: 61 KDPNFEDLEEAVAVAV 76

[Close]

BLAST of Cmc02g0039581 vs. NCBI nr
Match: KAG6588005.1 (hypothetical protein SDJN03_16570, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021899.1 hypothetical protein SDJN02_15627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 6.5e-26
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKK EKS KP+GKS+VRKDRKSATGM+GSPKKGGHGGKFTW+GDGYSPAEI F+AE MDV
Sbjct: 1  MKKPEKSLKPSGKSDVRKDRKSATGMSGSPKKGGHGGKFTWAGDGYSPAEISFRAEDMDV 60

Query: 61 KDPNFEDLEEAVAVAV 77
          KDPNFED EEAVAVAV
Sbjct: 61 KDPNFEDPEEAVAVAV 76

[Close]

BLAST of Cmc02g0039581 vs. NCBI nr
Match: KAE8653402.1 (hypothetical protein Csa_007013 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 7.4e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 60
          MKKSEKSSKP+GKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMD 59

[Close]

BLAST of Cmc02g0039581 vs. NCBI nr
Match: XP_030491603.1 (programmed cell death protein 4-like [Cannabis sativa] >KAF4390072.1 hypothetical protein F8388_003014 [Cannabis sativa] >KAF4398546.1 hypothetical protein G4B88_013635 [Cannabis sativa])

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-20
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + K SK  GKSEV+KDRKS TG+NGSPKKGG GGKFTW+GDGYSP+E+GF+ EVMDV
Sbjct: 1  MKSAGKGSKGNGKSEVKKDRKSGTGINGSPKKGGRGGKFTWAGDGYSPSEMGFQKEVMDV 60

Query: 61 KDPNFEDLEE 71
          KDPNFED EE
Sbjct: 61 KDPNFEDPEE 70

[Close]

BLAST of Cmc02g0039581 vs. NCBI nr
Match: EOY30624.1 (Uncharacterized protein TCM_037765 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + KSSK  GKS+VRKDRKS TGM+GSPKKGGHGGK+TW GDG SPAEIGF  EV+DV
Sbjct: 1  MKNAGKSSKGNGKSDVRKDRKSGTGMSGSPKKGGHGGKYTWVGDGLSPAEIGFDKEVVDV 60

Query: 61 KDPNFEDLEEAV 73
          KDPNFED +E V
Sbjct: 61 KDPNFEDPDEIV 72

[Close]

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL
Match: A0A5D3CE82 (Programmed cell death protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002840 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-32
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAVAVAV 77
          KDPNFEDLEEAVAVAV
Sbjct: 61 KDPNFEDLEEAVAVAV 76

[Close]

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL
Match: A0A0A0LWP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.7e-30
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MKKSEKSSKP+GKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV
Sbjct: 1  MKKSEKSSKPSGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60

Query: 61 KDPNFEDLEEAVAVAV 77
          KDPNFEDLEEA  VAV
Sbjct: 61 KDPNFEDLEEAETVAV 76

[Close]

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL
Match: A0A803NU54 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.1e-22
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + K SK  GKSEV+KDRKS TG+NGSPKKGGHGGKFTW+GDGYSP+E+GF+ EVMDV
Sbjct: 1  MKSAGKGSKGNGKSEVKKDRKSGTGINGSPKKGGHGGKFTWAGDGYSPSEMGFQKEVMDV 60

Query: 61 KDPNFEDLEEAVAV 75
          KDPNFED EE V V
Sbjct: 61 KDPNFEDPEEEVIV 74

[Close]

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL
Match: A0A7J6H479 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003014 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + K SK  GKSEV+KDRKS TG+NGSPKKGG GGKFTW+GDGYSP+E+GF+ EVMDV
Sbjct: 1  MKSAGKGSKGNGKSEVKKDRKSGTGINGSPKKGGRGGKFTWAGDGYSPSEMGFQKEVMDV 60

Query: 61 KDPNFEDLEE 71
          KDPNFED EE
Sbjct: 61 KDPNFEDPEE 70

[Close]

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL
Match: A0A803NU40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MKKSEKSSKPTGKSEVRKDRKSATGMNGSPKKGGHGGKFTWSGDGYSPAEIGFKAEVMDV 60
          MK + K SK  GKSEV+KDRKS TG+NGSPKKGG GGKFTW+GDGYSP+E+GF+ EVMDV
Sbjct: 1  MKSAGKGSKGNGKSEVKKDRKSGTGINGSPKKGGRGGKFTWAGDGYSPSEMGFQKEVMDV 60

Query: 61 KDPNFEDLEE 71
          KDPNFED EE
Sbjct: 61 KDPNFEDPEE 70

The following BLAST results are available for this feature:

BLAST of Cmc02g0039581 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10141.1	1.3e-31	100.00	programmed cell death protein 4-like [Cucumis melo var. makuwa]	[more]
KAG6588005.1	6.5e-26	86.84	hypothetical protein SDJN03_16570, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653402.1	7.4e-22	98.31	hypothetical protein Csa_007013 [Cucumis sativus]	[more]
XP_030491603.1	4.1e-20	77.14	programmed cell death protein 4-like [Cannabis sativa] >KAF4390072.1 hypothetica...	[more]
EOY30624.1	1.2e-19	76.39	Uncharacterized protein TCM_037765 [Theobroma cacao]	[more]

BLAST of Cmc02g0039581 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CE82	6.5e-32	100.00	Programmed cell death protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LWP4	2.7e-30	96.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G575040 PE=4 SV=1	[more]
A0A803NU54	6.1e-22	77.03	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6H479	2.0e-20	77.14	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003014 PE=4 SV=1	[more]
A0A803NU40	2.0e-20	77.14	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Cmc02g0039581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0039581.1	Cmc02g0039581.1	mRNA