Cmc02g0039271 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0039271
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr02: 1338039 .. 1338773 (-)
RNA-Seq Expression	Cmc02g0039271
Synteny	Cmc02g0039271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGAAACCTGTTGGCAAAAAACAGAATTATATTTGAGCTGCCCAAGGGATTACCACCGAAGAGAGCAGTGGACCATCGAATACTAATTCAGGAAGGACAAAACCCAATCAATGTTCGGCCCTACAAATATGGATACATACAAAAAGGGGAGATAGAAAGATTGGTATCAGAAATGCTTCAAGCGGAAATTATCAGACCCAGCCGAAGCCCATACTCCAGCCCAGTTTTATTGGTTAAAAAAAAAGACGGAGGGTGGCGATTCTGTGTTGATTATCGCAAGCTGAATCAGGTTACTATCGCCGATAAATTTCCCATCCCCGTCATAGAAGAACTGTTAGATGAGCTCCACGGAGCGGAAGTCTTTTCAAAATTGGATCTACGCTCCGGTTATCATCAAATTCGGATGAAGGAGGAAGACATCGAAAAAACGGCTTTTCGCACCCATGAGGGACATTACGAGTTTTTGGTAATGCCATTCGGGTTGACCAATGCGCCAGCCACTTTTCAATCATTAATGAATCAGATTTTTCGGCCATTCTTGCGGAGATTCGTTCTGGTATTTTTTGACGACATACTAATTTACAGTAAGAATATTACAGATCATGAGAAACACCTGGGAGTAGTTTTTAATGTGATGAAGGACAATCAGTTATTTGCAAATGAGAAGAAGTGTGTGATCGGGCATTCAAGAATTAACTATCTGGGTCACTGGATATCAAAAAAAGGGTAG

mRNA sequence

ATGATCAGAAACCTGTTGGCAAAAAACAGAATTATATTTGAGCTGCCCAAGGGATTACCACCGAAGAGAGCAGTGGACCATCGAATACTAATTCAGGAAGGACAAAACCCAATCAATGTTCGGCCCTACAAATATGGATACATACAAAAAGGGGAGATAGAAAGATTGGTATCAGAAATGCTTCAAGCGGAAATTATCAGACCCAGCCGAAGCCCATACTCCAGCCCAGTTTTATTGGTTAAAAAAAAAGACGGAGGGTGGCGATTCTGTGTTGATTATCGCAAGCTGAATCAGGTTACTATCGCCGATAAATTTCCCATCCCCGTCATAGAAGAACTGTTAGATGAGCTCCACGGAGCGGAAGTCTTTTCAAAATTGGATCTACGCTCCGGTTATCATCAAATTCGGATGAAGGAGGAAGACATCGAAAAAACGGCTTTTCGCACCCATGAGGGACATTACGAGTTTTTGGTAATGCCATTCGGGTTGACCAATGCGCCAGCCACTTTTCAATCATTAATGAATCAGATTTTTCGGCCATTCTTGCGGAGATTCGTTCTGGTATTTTTTGACGACATACTAATTTACAGTAAGAATATTACAGATCATGAGAAACACCTGGGAGTAGTTTTTAATGTGATGAAGGACAATCAGTTATTTGCAAATGAGAAGAAGTGTGTGATCGGGCATTCAAGAATTAACTATCTGGGTCACTGGATATCAAAAAAAGGGTAG

Coding sequence (CDS)

ATGATCAGAAACCTGTTGGCAAAAAACAGAATTATATTTGAGCTGCCCAAGGGATTACCACCGAAGAGAGCAGTGGACCATCGAATACTAATTCAGGAAGGACAAAACCCAATCAATGTTCGGCCCTACAAATATGGATACATACAAAAAGGGGAGATAGAAAGATTGGTATCAGAAATGCTTCAAGCGGAAATTATCAGACCCAGCCGAAGCCCATACTCCAGCCCAGTTTTATTGGTTAAAAAAAAAGACGGAGGGTGGCGATTCTGTGTTGATTATCGCAAGCTGAATCAGGTTACTATCGCCGATAAATTTCCCATCCCCGTCATAGAAGAACTGTTAGATGAGCTCCACGGAGCGGAAGTCTTTTCAAAATTGGATCTACGCTCCGGTTATCATCAAATTCGGATGAAGGAGGAAGACATCGAAAAAACGGCTTTTCGCACCCATGAGGGACATTACGAGTTTTTGGTAATGCCATTCGGGTTGACCAATGCGCCAGCCACTTTTCAATCATTAATGAATCAGATTTTTCGGCCATTCTTGCGGAGATTCGTTCTGGTATTTTTTGACGACATACTAATTTACAGTAAGAATATTACAGATCATGAGAAACACCTGGGAGTAGTTTTTAATGTGATGAAGGACAATCAGTTATTTGCAAATGAGAAGAAGTGTGTGATCGGGCATTCAAGAATTAACTATCTGGGTCACTGGATATCAAAAAAAGGGTAG

Protein sequence

MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEMLQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGAEVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWISKKG

Homology

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BLAST of Cmc02g0039271 vs. NCBI nr
Match: KAA0062448.1 (disease resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.0 bits (1268), Expect = 1.4e-135
Identity = 240/244 (98.36%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIRNLLAKNRIIFELPKGLPPKRAVDHRILI EGQNPINVRPYKYGYIQK EIERLVSEM
Sbjct: 414 MIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGYIQKWEIERLVSEM 473

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA
Sbjct: 474 LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 533

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP
Sbjct: 534 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 593

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSKNIT+HEKHLGVVFNVMKDNQLFANEKKC+IGHSRINYLGHWI
Sbjct: 594 FLRRFVLVFFDDILIYSKNITEHEKHLGVVFNVMKDNQLFANEKKCMIGHSRINYLGHWI 653

Query: 241 SKKG 245
           SKKG
Sbjct: 654 SKKG 657

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BLAST of Cmc02g0039271 vs. NCBI nr
Match: TYK27437.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 493.0 bits (1268), Expect = 1.4e-135
Identity = 240/244 (98.36%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIRNLLAKNRIIFELPKGLPPKRAVDHRILI EGQNPINVRPYKYGYIQK EIERLVSEM
Sbjct: 565 MIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGYIQKWEIERLVSEM 624

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA
Sbjct: 625 LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 684

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP
Sbjct: 685 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 744

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSKNIT+HEKHLGVVFNVMKDNQLFANEKKC+IGHSRINYLGHWI
Sbjct: 745 FLRRFVLVFFDDILIYSKNITEHEKHLGVVFNVMKDNQLFANEKKCMIGHSRINYLGHWI 804

Query: 241 SKKG 245
           SKKG
Sbjct: 805 SKKG 808

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BLAST of Cmc02g0039271 vs. NCBI nr
Match: TYJ98046.1 (peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 492.3 bits (1266), Expect = 2.5e-135
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIRNLLAKNRIIFELPKGLPPKRAVDHRILI EGQNPINVRPYKYGYIQKGEIERLVSEM
Sbjct: 87  MIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGYIQKGEIERLVSEM 146

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQAEIIRPSRSPYSSPVLLVKK+DGGWRFCVDY KLNQVT+ADKFPIPVIEELLDELHGA
Sbjct: 147 LQAEIIRPSRSPYSSPVLLVKKRDGGWRFCVDYHKLNQVTVADKFPIPVIEELLDELHGA 206

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNQIFRP
Sbjct: 207 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNGPATFQSLMNQIFRP 266

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSKNIT+HEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI
Sbjct: 267 FLRRFVLVFFDDILIYSKNITEHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 326

Query: 241 SKKG 245
           SKKG
Sbjct: 327 SKKG 330

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BLAST of Cmc02g0039271 vs. NCBI nr
Match: KAA0036567.1 (peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 446.0 bits (1146), Expect = 2.0e-121
Identity = 213/244 (87.30%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           M+RN L + R IFE PKGLPPKRAVDHRI+  EGQ PINVRPYKYGYIQK EIE+LVSEM
Sbjct: 1   MVRNFLTRYRSIFETPKGLPPKRAVDHRIVTLEGQKPINVRPYKYGYIQKEEIEKLVSEM 60

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQA IIRPSRSPYS+PVLLVKK+DGGWRFCVDY KLNQ++IADKF IPVIEELLDELHGA
Sbjct: 61  LQAGIIRPSRSPYSNPVLLVKKRDGGWRFCVDYCKLNQLSIADKFSIPVIEELLDELHGA 120

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMK+ED+EKT+FRTHEGHYEFLVMPFGLTNAPATFQSLMNQ+FRP
Sbjct: 121 EVFSKLDLRSGYHQIRMKDEDVEKTSFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFRP 180

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSK+IT+HE+HLGVVFNVMKDNQLFANEKKCVI  SRI+YLGHWI
Sbjct: 181 FLRRFVLVFFDDILIYSKDITEHERHLGVVFNVMKDNQLFANEKKCVIEQSRISYLGHWI 240

Query: 241 SKKG 245
           SK+G
Sbjct: 241 SKRG 244

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BLAST of Cmc02g0039271 vs. NCBI nr
Match: KAE8637561.1 (hypothetical protein CSA_017659 [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 6.5e-112
Identity = 197/244 (80.74%), Postives = 220/244 (90.16%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MI+NLL +   IFE PK LPPKR +DHRIL+   Q PINVRPYKYGY+QK EIE+LV EM
Sbjct: 179 MIKNLLQQYANIFEDPKKLPPKREIDHRILVLPDQRPINVRPYKYGYVQKEEIEKLVVEM 238

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQA +IRPS SPYSSPVLLVKKKDGGWRFCVDYRKLNQVTI+DKFPIPVIEELLDELHGA
Sbjct: 239 LQAGVIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTISDKFPIPVIEELLDELHGA 298

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
            VFSKLD++S YHQIRM+EED+EKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQ+F+P
Sbjct: 299 TVFSKLDMKSDYHQIRMQEEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKP 358

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRR VLVFFDDIL+YSK+I++HEKHLG+VF V++DN LFAN+KKCVI HS+I YLGH I
Sbjct: 359 FLRRCVLVFFDDILVYSKDISEHEKHLGMVFAVLRDNHLFANKKKCVIAHSKIQYLGHII 418

Query: 241 SKKG 245
           S KG
Sbjct: 419 SSKG 422

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BLAST of Cmc02g0039271 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 105/228 (46.05%), Postives = 140/228 (61.40%), Query Frame = 0


Query: 19  LPPKRA------VDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEMLQAEIIRPSRSP 78
           LPP+ A      V H I I+ G     ++PY      + EI ++V ++L  + I PS+SP
Sbjct: 572 LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 631

Query: 79  YSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGAEVFSKLDLRSGY 138
            SSPV+LV KKDG +R CVDYR LN+ TI+D FP+P I+ LL  +  A++F+ LDL SGY
Sbjct: 632 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 691

Query: 139 HQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDD 198
           HQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   FR    RFV V+ DD
Sbjct: 692 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDD 751

Query: 199 ILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 241
           ILI+S++  +H KHL  V   +K+  L   +KKC        +LG+ I
Sbjct: 752 ILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSI 797

[Close]

BLAST of Cmc02g0039271 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 197.2 bits (500), Expect = 2.1e-49
Identity = 105/228 (46.05%), Postives = 140/228 (61.40%), Query Frame = 0


Query: 19  LPPKRA------VDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEMLQAEIIRPSRSP 78
           LPP+ A      V H I I+ G     ++PY      + EI ++V ++L  + I PS+SP
Sbjct: 598 LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 657

Query: 79  YSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGAEVFSKLDLRSGY 138
            SSPV+LV KKDG +R CVDYR LN+ TI+D FP+P I+ LL  +  A++F+ LDL SGY
Sbjct: 658 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 717

Query: 139 HQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDD 198
           HQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   FR    RFV V+ DD
Sbjct: 718 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDD 777

Query: 199 ILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 241
           ILI+S++  +H KHL  V   +K+  L   +KKC        +LG+ I
Sbjct: 778 ILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSI 823

[Close]

BLAST of Cmc02g0039271 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-47
Identity = 95/214 (44.39%), Postives = 130/214 (60.75%), Query Frame = 0


Query: 36  NPINVRPYKYGYIQKGEIERLVSEMLQAEIIRPSRSPYSSPVLLVKKKDGG-----WRFC 95
           +PI  + Y      + E+E  V EML   +IR S SPY+SP  +V KK        +R  
Sbjct: 205 SPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVV 264

Query: 96  VDYRKLNQVTIADKFPIPVIEELLDELHGAEVFSKLDLRSGYHQIRMKEEDIEKTAFRTH 155
           +DYRKLN++TI D++PIP ++E+L +L   + F+ +DL  G+HQI M EE I KTAF T 
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 156 EGHYEFLVMPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKNITDHEKHLGVV 215
            GHYE+L MPFGL NAPATFQ  MN I RP L +  LV+ DDI+I+S ++T+H   + +V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 216 FNVMKDNQLFANEKKCVIGHSRINYLGHWISKKG 245
           F  + D  L     KC       N+LGH ++  G
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDG 418

[Close]

BLAST of Cmc02g0039271 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.2e-45
Identity = 102/250 (40.80%), Postives = 149/250 (59.60%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELP-KGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSE 60
           ++ +LL +   IFE P  G+  + AV   I     Q+PI  + Y Y    +GE+ER + E
Sbjct: 87  ILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNT-QDPIYAKSYPYPVNMRGEVERQIDE 146

Query: 61  MLQAEIIRPSRSPYSSPVLLVKKK-----DGGWRFCVDYRKLNQVTIADKFPIPVIEELL 120
           +LQ  IIRPS SPY+SP+ +V KK     +  +R  VD+++LN VTI D +PIP I   L
Sbjct: 147 LLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATL 206

Query: 121 DELHGAEVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLM 180
             L  A+ F+ LDL SG+HQI MKE DI KTAF T  G YEFL +PFGL NAPA FQ ++
Sbjct: 207 ASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMI 266

Query: 181 NQIFRPFLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRIN 240
           + I R  + +   V+ DDI+++S++   H K+L +V   +    L  N +K     +++ 
Sbjct: 267 DDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVE 326

Query: 241 YLGHWISKKG 245
           +LG+ ++  G
Sbjct: 327 FLGYIVTADG 335

[Close]

BLAST of Cmc02g0039271 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.3e-45
Identity = 88/207 (42.51%), Postives = 124/207 (59.90%), Query Frame = 0


Query: 43  YKYGYIQKGEIERLVSEMLQAEIIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLN 102
           Y Y    + E+E  + +ML   IIR S SPY+SP+ +V KK        +R  +DYRKLN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 103 QVTIADKFPIPVIEELLDELHGAEVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFL 162
           ++T+ D+ PIP ++E+L +L     F+ +DL  G+HQI M  E + KTAF T  GHYE+L
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 163 VMPFGLTNAPATFQSLMNQIFRPFLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDN 222
            MPFGL NAPATFQ  MN I RP L +  LV+ DDI+++S ++ +H + LG+VF  +   
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

Query: 223 QLFANEKKCVIGHSRINYLGHWISKKG 245
            L     KC        +LGH ++  G
Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDG 419

[Close]

BLAST of Cmc02g0039271 vs. ExPASy TrEMBL
Match: A0A5D3DUJ0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001340 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.0e-136
Identity = 240/244 (98.36%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIRNLLAKNRIIFELPKGLPPKRAVDHRILI EGQNPINVRPYKYGYIQK EIERLVSEM
Sbjct: 565 MIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGYIQKWEIERLVSEM 624

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA
Sbjct: 625 LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 684

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP
Sbjct: 685 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 744

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSKNIT+HEKHLGVVFNVMKDNQLFANEKKC+IGHSRINYLGHWI
Sbjct: 745 FLRRFVLVFFDDILIYSKNITEHEKHLGVVFNVMKDNQLFANEKKCMIGHSRINYLGHWI 804

Query: 241 SKKG 245
           SKKG
Sbjct: 805 SKKG 808

[Close]

BLAST of Cmc02g0039271 vs. ExPASy TrEMBL
Match: A0A5A7V4D8 (Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00260 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.0e-136
Identity = 240/244 (98.36%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIRNLLAKNRIIFELPKGLPPKRAVDHRILI EGQNPINVRPYKYGYIQK EIERLVSEM
Sbjct: 414 MIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGYIQKWEIERLVSEM 473

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA
Sbjct: 474 LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 533

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP
Sbjct: 534 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 593

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSKNIT+HEKHLGVVFNVMKDNQLFANEKKC+IGHSRINYLGHWI
Sbjct: 594 FLRRFVLVFFDDILIYSKNITEHEKHLGVVFNVMKDNQLFANEKKCMIGHSRINYLGHWI 653

Query: 241 SKKG 245
           SKKG
Sbjct: 654 SKKG 657

[Close]

BLAST of Cmc02g0039271 vs. ExPASy TrEMBL
Match: A0A5D3BG24 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold401G00120 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.2e-135
Identity = 238/244 (97.54%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIRNLLAKNRIIFELPKGLPPKRAVDHRILI EGQNPINVRPYKYGYIQKGEIERLVSEM
Sbjct: 87  MIRNLLAKNRIIFELPKGLPPKRAVDHRILIPEGQNPINVRPYKYGYIQKGEIERLVSEM 146

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQAEIIRPSRSPYSSPVLLVKK+DGGWRFCVDY KLNQVT+ADKFPIPVIEELLDELHGA
Sbjct: 147 LQAEIIRPSRSPYSSPVLLVKKRDGGWRFCVDYHKLNQVTVADKFPIPVIEELLDELHGA 206

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTN PATFQSLMNQIFRP
Sbjct: 207 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNGPATFQSLMNQIFRP 266

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSKNIT+HEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI
Sbjct: 267 FLRRFVLVFFDDILIYSKNITEHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 326

Query: 241 SKKG 245
           SKKG
Sbjct: 327 SKKG 330

[Close]

BLAST of Cmc02g0039271 vs. ExPASy TrEMBL
Match: A0A5A7T4R8 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00750 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.8e-122
Identity = 213/244 (87.30%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           M+RN L + R IFE PKGLPPKRAVDHRI+  EGQ PINVRPYKYGYIQK EIE+LVSEM
Sbjct: 1   MVRNFLTRYRSIFETPKGLPPKRAVDHRIVTLEGQKPINVRPYKYGYIQKEEIEKLVSEM 60

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQA IIRPSRSPYS+PVLLVKK+DGGWRFCVDY KLNQ++IADKF IPVIEELLDELHGA
Sbjct: 61  LQAGIIRPSRSPYSNPVLLVKKRDGGWRFCVDYCKLNQLSIADKFSIPVIEELLDELHGA 120

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
           EVFSKLDLRSGYHQIRMK+ED+EKT+FRTHEGHYEFLVMPFGLTNAPATFQSLMNQ+FRP
Sbjct: 121 EVFSKLDLRSGYHQIRMKDEDVEKTSFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFRP 180

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRRFVLVFFDDILIYSK+IT+HE+HLGVVFNVMKDNQLFANEKKCVI  SRI+YLGHWI
Sbjct: 181 FLRRFVLVFFDDILIYSKDITEHERHLGVVFNVMKDNQLFANEKKCVIEQSRISYLGHWI 240

Query: 241 SKKG 245
           SK+G
Sbjct: 241 SKRG 244

[Close]

BLAST of Cmc02g0039271 vs. ExPASy TrEMBL
Match: A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.6e-111
Identity = 196/244 (80.33%), Postives = 218/244 (89.34%), Query Frame = 0


Query: 1   MIRNLLAKNRIIFELPKGLPPKRAVDHRILIQEGQNPINVRPYKYGYIQKGEIERLVSEM 60
           MIR LL + + IF  PKGLPPKR +DHRIL    Q PINVRPYKYG+IQKGEIE+LV+EM
Sbjct: 561 MIRFLLQQYKDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEM 620

Query: 61  LQAEIIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQVTIADKFPIPVIEELLDELHGA 120
           LQ  +IRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQ TI+DKFPIPVIEELLDEL+GA
Sbjct: 621 LQDGVIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGA 680

Query: 121 EVFSKLDLRSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQIFRP 180
            VFSKLDL+SGYHQIRMKEED+EKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQ+F+P
Sbjct: 681 AVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKP 740

Query: 181 FLRRFVLVFFDDILIYSKNITDHEKHLGVVFNVMKDNQLFANEKKCVIGHSRINYLGHWI 240
           FLRR VLVFFDDIL+YS++I + EKHLG+VF V++DNQL+AN KKCV  HS+I YLGH I
Sbjct: 741 FLRRCVLVFFDDILVYSRDIIEREKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQI 800

Query: 241 SKKG 245
           SK G
Sbjct: 801 SKAG 804

[Close]

BLAST of Cmc02g0039271 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-08
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 48 IQKGEIERLVSEMLQAEIIRPSRSPYSSPVLLVKKKDGGW 88
          +++  ++  + EML+A II+PS SPYSSPVLLV+KKDGGW
Sbjct: 40 LRRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc02g0039271 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062448.1	1.4e-135	98.36	disease resistance protein [Cucumis melo var. makuwa]	[more]
TYK27437.1	1.4e-135	98.36	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ98046.1	2.5e-135	97.54	peroxidase 64 [Cucumis melo var. makuwa]	[more]
KAA0036567.1	2.0e-121	87.30	peroxidase 64 [Cucumis melo var. makuwa]	[more]
KAE8637561.1	6.5e-112	80.74	hypothetical protein CSA_017659 [Cucumis sativus]	[more]

BLAST of Cmc02g0039271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.1e-49	46.05	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.1e-49	46.05	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	2.0e-47	44.39	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	3.2e-45	40.80	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	9.3e-45	42.51	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc02g0039271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUJ0	7.0e-136	98.36	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V4D8	7.0e-136	98.36	Disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3BG24	1.2e-135	97.54	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold401G00120 ...	[more]
A0A5A7T4R8	9.8e-122	87.30	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00750 ...	[more]
A0A5A7UYM1	4.6e-111	80.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc02g0039271 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	5.5e-08	60.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 105..240 e-value: 7.2E-90 score: 301.9
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 80..240 e-value: 3.9E-33 score: 114.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 61..240 score: 17.833681
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 25..165 e-value: 7.2E-90 score: 301.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..191
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..191
None	No IPR available	CDD	cd01647	RT_LTR	coord: 65..238 e-value: 3.87273E-98 score: 282.177
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0039271.1	Cmc02g0039271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0008270	zinc ion binding