Cmc02g0038951 (gene) Melon (Charmono) v1.1

Overview
NameCmc02g0038951
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptiontrafficking protein particle complex subunit 6B
LocationCMiso1.1chr02: 1124185 .. 1127845 (-)
RNA-Seq ExpressionCmc02g0038951
SyntenyCmc02g0038951
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTTAAATTTTGAGTCATGAAAAATGTGAAAATTTCGATTTTACGACATGTCGTCCTTTAGTAGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACTCGATCGATCTTCTCTCATTCTCCATCTTGTTCTTGATTTCCTTCCCAATTCTATCGAATTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGGTCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGGATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATTCCTTCAACCCCACTTTCTACCCATCTTTTTTTGTTGCTTAGATTTTGATTTCCAATGTTGGCTAATGGATCTCTGATTCAGTTTCCTAATTCTTTCATACTTTTTTCTGTTTTACTGAATGTATATGTTGGGAGATTTATATTTGAGCTTGGGAAGAACAATAGTTGGGACTAGAATTGAGGGTTAGAAGTGTTTCACCAACACCCCACCACATAGGAAAAGGAATTTTGTGTAATTGAAAACATCTATTCTATAATGAAAGCAGGAGGACAAAAAGTTGAATTTTTCAGGATAATAAAATCATATATTGACATGGACTAGTTTTTGGGATATGACAGATACTCCATAACCAAAACAGTATACATGACAATGGCTAGGCTCTAGAGTTACTTCTGATCATCGTTTGCAGTGCTTAGACGGCCATTTTGAAATGGGTTCTAACCCCCCCTTCAGATTTGAGAATATGTGCATTTTTCGTCCCTATTTTAGAGCCTAGCTTATTTTACCCTTCTAATGTGCCGCAGAGGTAGAGGTCTTAGGAAAATGGGAAGGTTATTGTTTTTGGGTAAGCCTCACAGTTTGAGAGAGTCCCTTAATTCGAAATCGTGAAGTTTTTGGAGACTTGAAAATCAAGAAACTAGATTAACTAAATTGTAATACCATGATGGGTTGATTGGAAGAGGTGCTTTGAACAGAGAGAGGGAAGGTTATCTCTGAAAGTTGAGTTTGAAGAGGTGATTAATTGTGAAACTATCTGCTGGAGGCAAAACGCTAAATGTACATAGGCTTTGGAGGGTAACAACACTGCTTACCTCCATAGGGTTGACCACACAGAAAGTAATTGTTTTCATAAATTAGTAAAAAAGAAATAGAAAGAGAAAAACCCACTGGTCTGCAAAGATGGGAAACTATACGATAAGGAGACTGAAACGGGAGTTCTCTCTTTTTTATCTTCTCTTCATGGTTTGACTGTGGATTATCTCACCTAAGCCTTTCCTTGAGGGGCTCTCCCATCTCAAATGAACCCCAGCCTGATGGTTTCACTATGGCGTTTTTCTAGATAACTGGGGCTTATGATCTTTGGAAAGTGACTTTTGAGTTATATAAGCGAGGAGTGGTGGATAAGTCAATGAACAAAACTTTTTTCTCCTGTTTCCTAAGAAGGAAGAAATGTGAAGGATCTAGGAGTTTAGACCCAAGAAATGTGAAGGTTTAGAAGTTTAGACCCATGAGCATTCTCGCTTGGGTATATAAAATTCTAGCACACTATTGCATTGTTATTAACTAGATATGTCTTCAATAAATGTATGACTCCTATTGTTCAAAAGGATGAAATTGATTGGTTGATTCAAGTGATGTTGACAGGGGTCTGGGATTGAACAATTGTGTACTAGATTGTTTTCAAGCCTATTTTATTGATTCAGAGAATACTTACGTTTGTTGTTGGTTATAAGCTTTAAATTGCGTAATGATTTCGAACAAATATCTCATTTGAGTAGTAGATGAGTTGCTAGATGAACTGTATGCTGGCAATATCTTTTCCAAAACCAAGAAGTGTACCCCGATTAAGCTCTTACTAGAGGATATCCATAATAATGCCGTGAAGGTTGAGTTAATATTCCCTTAACTTTGCAGTCTGTAATGGATAATGTCCTTTGGCCCTTCTTACAGGTTGTCTTGTTCTGGTTTATAGTGTCAAGTTGAAGGATCATTTGAGCTTCTTGCAGTAGTCTTCAGTGCTTCGGGACCATCAGTTAGTTACTAAAAAGTGTCAGCTTGCATTATCCCACGTCCTGTAGTTAGCCATGTAGTGCTAGCTTAACCATTGAAGTTGCTTCTAATCCTTTATACAATTGCTGCAAAGGACCAATGGTATGTACCCCAATAGTTTGGAGTTATGTGGGTTCTAGGCCAGTATGATAACTATCAAATCTTTTGTCAATTGTGAAATTGGGGGTTGGCCACGGGTGTAATGTTAATGCAAGAATCTTACCCGACAAGAGGTATGTGGTATGTGGTATACTAGATGTGAAGATGAAAGGAGGGGTGTGCAGGAACTCTCTAATTCCCCAGAGACGTTTGTTTCCCTGTTTAGCTAGTAAAATATTCTGCTGGGAGTCTCAATACATTATGACTTAGCTTCCATTTCCATTCCCGTTTTATGGCTTCTTATTCATGGTACTTGACAACTAAATACTGCAACTTTACTGTTAAGCTTTGTTTTCAGGTATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGAGTAAGATCAGAAGTCAAACCTAGAAGCAGCCGTTCTTTTTCTTGTGTACTGTGCTTGATCCTTCATGAACTTGACCTAAATATGGAAATTTGTTTTGATTCTCAGGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATTAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTAAGTAATCAAACTTCAATCATAATCCCCACTTTGCTTCTTTGTTCCAGAACTGAGAAAATGACCTGTTGAAACCACTTTGTTTTATGAAATAGGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACATGATAGATCCTTAACACCACTCTCCAGTTGCAATCCTTTCTGTCCTGTTTCCTTTTTTGCTTTCTCTATTCCTCTATCTTCTCCTAGTTCATGAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTGTATGTATGAAAGTCAATAGCGATTTCTTTTCAGAATTTCATGACTGTAGAGATAGTTGAGGTTTATTTTATATTTTACCATTTGGGAGGATTGATTCATATGCTATGAATCTGTAATGATCACCTATCTGGATTGTTAAGGTTCTATGGGTTTCGAGATGATTAAAATATTGTAGGGTTGATCATTCATGAGATTGTTGTAGACATGTGTAAACCTATCTAAACAGTTATGGAGACAAAAAAAAATATTACTTTTTATTTTTTATCATGAGTTTACACAAGATGCACATTTTTAGGCATCTCACTCTCATCATTGTCAT

mRNA sequence

TTTATTTAAATTTTGAGTCATGAAAAATGTGAAAATTTCGATTTTACGACATGTCGTCCTTTAGTAGTTGAATCTAGACTGAGGGCGGAATCAAGGCAGTGACTCGATCGATCTTCTCTCATTCTCCATCTTGTTCTTGATTTCCTTCCCAATTCTATCGAATTGAGCTTCTTCAGCTTTCTACAATTCCACTTTGGTCGAAGGTAAAAACACATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGGATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATTAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGATGAGAAGTGTATCAAAAAGTAGAGATTTTATCTTTGGGATATGAAGACATGATAGATCCTTAACACCACTCTCCAGTTGCAATCCTTTCTGTCCTGTTTCCTTTTTTGCTTTCTCTATTCCTCTATCTTCTCCTAGTTCATGAAACTCTTAGCACAAAAATCTGTTGGACAAACGTTTGTGTATGTATGAAAGTCAATAGCGATTTCTTTTCAGAATTTCATGACTGTAGAGATAGTTGAGGTTTATTTTATATTTTACCATTTGGGAGGATTGATTCATATGCTATGAATCTGTAATGATCACCTATCTGGATTGTTAAGGTTCTATGGGTTTCGAGATGATTAAAATATTGTAGGGTTGATCATTCATGAGATTGTTGTAGACATGTGTAAACCTATCTAAACAGTTATGGAGACAAAAAAAAATATTACTTTTTATTTTTTATCATGAGTTTACACAAGATGCACATTTTTAGGCATCTCACTCTCATCATTGTCAT

Coding sequence (CDS)

ATGGGGAGAGAGGTAGCAGAGAGTTGCGTTGACAGTCTATTGACGGAAATGGTTTCCACTTATTGCCATCGATTCTACGCCAATAAGCCGGAGCTAGCCGCCCGTCGGATCGAGGCAATTGGTTATCAGGTTGGCCATCAGCTCTCCGAACGGTATACGATGGAGCGGCCTCGGTTCACTGATCATCTTGAAGCAATCAAATTTATCTGCAAGGACTTCTGGTCTGAACTCTTCAAAAAGCAAATAGACAACTTGAAAACAAATCATAGAGGCACCTTTGTCTTGCAAGATAATCGATTCCGCTGGCTTACTCGCATGTCGGTGGATCCTCAAAATGAATCACAAGATAATTCTGCAGATGGTGAAAACAAGGCAGCTCAAGCAACAAGCATGCATCTATATTTCCCATGCGGAATCATTAGAGGTGCTCTTTCAAATTTGGGAATTCCTTGTGCGGTTTCTGCTGATATTTCAAATCTTCCAGCATGTTCATTTGTTGTTCGTATAAAGGCCTGA

Protein sequence

MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Homology
[Close]
BLAST of Cmc02g0038951 vs. NCBI nr
Match: XP_008450728.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo] >TYK10194.1 trafficking protein particle complex subunit 6B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 1.2e-93
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of Cmc02g0038951 vs. NCBI nr
Match: XP_004135644.1 (trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 3.6e-93
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of Cmc02g0038951 vs. NCBI nr
Match: XP_038878648.1 (trafficking protein particle complex subunit 6B [Benincasa hispida])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQ+ESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQSESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of Cmc02g0038951 vs. NCBI nr
Match: XP_008450727.1 (PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 6.9e-92
Identity = 171/175 (97.71%), Postives = 171/175 (97.71%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE----RYTMER 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE    RYTMER
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFRYTMER 60

Query: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120
           PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD
Sbjct: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]
BLAST of Cmc02g0038951 vs. NCBI nr
Match: XP_031736214.1 (trafficking protein particle complex subunit 6B isoform X1 [Cucumis sativus] >KAE8653391.1 hypothetical protein Csa_007534 [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 2.6e-91
Identity = 170/176 (96.59%), Postives = 170/176 (96.59%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE-----RYTME 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE     RYTME
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFTRYTME 60

Query: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120
           RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ
Sbjct: 61  RPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQ 120

Query: 121 DNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           DNSADGENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 DNSADGENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 176

[Close]
BLAST of Cmc02g0038951 vs. ExPASy Swiss-Prot
Match: Q32L78 (Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-32
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 154

Query: 156 DISNLPACSFVVRIK 171
           ++S++PAC F V I+
Sbjct: 155 EVSSMPACKFQVMIQ 156

[Close]
BLAST of Cmc02g0038951 vs. ExPASy Swiss-Prot
Match: Q86SZ2 (Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-32
Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT+MS   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLTQMSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 154

Query: 156 DISNLPACSFVVRIK 171
           ++S++PAC F V I+
Sbjct: 155 EVSSMPACKFQVMIQ 156

[Close]
BLAST of Cmc02g0038951 vs. ExPASy Swiss-Prot
Match: F1QMV3 (Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.1e-31
Identity = 64/135 (47.41%), Postives = 91/135 (67.41%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E +G++VG  L ER+T + PRF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 34  KLENMGFRVGQGLIERFTKDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVL 93

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR LT++S   Q               +     L F CG++RGALSN+G+   V+A
Sbjct: 94  QDNKFRLLTQLSAGKQ-------------YLEHAPKFLAFTCGLVRGALSNIGVKSIVTA 153

Query: 156 DISNLPACSFVVRIK 171
           ++S +PAC F V I+
Sbjct: 154 EVSVMPACKFQVMIQ 155

[Close]
BLAST of Cmc02g0038951 vs. ExPASy Swiss-Prot
Match: Q9D289 (Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trappc6b PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.1e-31
Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 0 

Query: 36  RIEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVL 95
           ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VL
Sbjct: 35  KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVL 94

Query: 96  QDNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSA 155
           QDN+FR L ++S   Q               +  S +L F CG+IRG LSNLGI   V+A
Sbjct: 95  QDNKFRLLIQLSAGKQ-------------YLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 154

Query: 156 DISNLPACSFVVRIK 171
           ++S++PAC F V I+
Sbjct: 155 EVSSMPACKFQVMIQ 156

[Close]
BLAST of Cmc02g0038951 vs. ExPASy Swiss-Prot
Match: Q78XR0 (Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trappc6a PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-24
Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = 0 

Query: 37  IEAIGYQVGHQLSERYTMERPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
           +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQ
Sbjct: 37  LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQ 96

Query: 97  DNRFRWLTRMSVDPQNESQDNSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSAD 156
           DN F  L  M   PQ               +     L F CG++ GAL  LG    V+A 
Sbjct: 97  DNSFPLLVTMGSGPQ-------------YLEEAPKFLAFTCGLLCGALHTLGFQSLVTAS 156

Query: 157 ISNLPACSFVVRIK 171
           +++LPAC F V I+
Sbjct: 157 VASLPACKFQVVIQ 157

[Close]
BLAST of Cmc02g0038951 vs. ExPASy TrEMBL
Match: A0A5D3CG65 (Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003390 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.0e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of Cmc02g0038951 vs. ExPASy TrEMBL
Match: A0A1S3BP90 (trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.0e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of Cmc02g0038951 vs. ExPASy TrEMBL
Match: A0A0A0M1M8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.8e-93
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQDNSAD 120

Query: 121 GENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           GENK AQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 GENKVAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 171

[Close]
BLAST of Cmc02g0038951 vs. ExPASy TrEMBL
Match: A0A1S3BQW9 (trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492220 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.3e-92
Identity = 171/175 (97.71%), Postives = 171/175 (97.71%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE----RYTMER 60
           MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSE    RYTMER
Sbjct: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERFVFRYTMER 60

Query: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120
           PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD
Sbjct: 61  PRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPQNESQD 120

Query: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
           NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA
Sbjct: 121 NSADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 175

[Close]
BLAST of Cmc02g0038951 vs. ExPASy TrEMBL
Match: A0A6J1I0Q5 (trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=LOC111467932 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREV+ESCVDSLLTEMVSTYC+RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT
Sbjct: 1   MGREVSESCVDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD-PQNESQDNSA 120
           DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVD PQ ESQDNSA
Sbjct: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDPPQGESQDNSA 120

Query: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171
           DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK
Sbjct: 121 DGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 171

[Close]
BLAST of Cmc02g0038951 vs. TAIR 10
Match: AT3G05000.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 303.9 bits (777), Expect = 8.1e-83
Identity = 145/173 (83.82%), Postives = 161/173 (93.06%), Query Frame = 0 

Query: 1   MGREVAESCVDSLLTEMVSTYCHRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFT 60
           MGREVAESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRF+
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLTRMSVDP--QNESQDNS 120
           DHLEAIKFICKDFWSE+FKKQIDNLKTNHRGTFVLQDN+FRWL+R+S+DP  +NE+QD S
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSENETQDPS 120

Query: 121 ADGENKAAQATSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA 172
             GE+KAAQA SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+R+KA
Sbjct: 121 TPGESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173

The following BLAST results are available for this feature:
BLAST of Cmc02g0038951 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450728.11.2e-93100.00PREDICTED: trafficking protein particle complex subunit 6B isoform X2 [Cucumis m... [more]
XP_004135644.13.6e-9399.42trafficking protein particle complex subunit 6B isoform X2 [Cucumis sativus][more]
XP_038878648.11.1e-9298.83trafficking protein particle complex subunit 6B [Benincasa hispida][more]
XP_008450727.16.9e-9297.71PREDICTED: trafficking protein particle complex subunit 6B isoform X1 [Cucumis m... [more]
XP_031736214.12.6e-9196.59trafficking protein particle complex subunit 6B isoform X1 [Cucumis sativus] >KA... [more]
BLAST of Cmc02g0038951 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q32L788.3e-3249.63Trafficking protein particle complex subunit 6B OS=Bos taurus OX=9913 GN=TRAPPC6... [more]
Q86SZ28.3e-3249.63Trafficking protein particle complex subunit 6B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
F1QMV33.1e-3147.41Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc... [more]
Q9D2894.1e-3148.15Trafficking protein particle complex subunit 6B OS=Mus musculus OX=10090 GN=Trap... [more]
Q78XR03.7e-2440.30Trafficking protein particle complex subunit 6A OS=Mus musculus OX=10090 GN=Trap... [more]
BLAST of Cmc02g0038951 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CG656.0e-94100.00Trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo var. ... [more]
A0A1S3BP906.0e-94100.00trafficking protein particle complex subunit 6B isoform X2 OS=Cucumis melo OX=36... [more]
A0A0A0M1M81.8e-9399.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573010 PE=3 SV=1[more]
A0A1S3BQW93.3e-9297.71trafficking protein particle complex subunit 6B isoform X1 OS=Cucumis melo OX=36... [more]
A0A6J1I0Q52.4e-9097.66trafficking protein particle complex subunit 6B OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Cmc02g0038951 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G05000.18.1e-8383.82Transport protein particle (TRAPP) component [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007194Transport protein particle (TRAPP) componentPFAMPF04051TRAPPcoord: 11..169
e-value: 1.4E-47
score: 161.2
NoneNo IPR availableGENE3D3.30.1380.20Trafficking protein particle complex subunit 3coord: 5..171
e-value: 8.4E-61
score: 206.2
NoneNo IPR availablePANTHERPTHR12817:SF6TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6A-RELATEDcoord: 1..170
IPR037992TRAPP complex, Trs33 subunitPANTHERPTHR12817TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6Bcoord: 1..170
IPR037992TRAPP complex, Trs33 subunitCDDcd14944TRAPPC6A_Trs33coord: 6..170
e-value: 7.53334E-84
score: 242.545
IPR024096NO signalling/Golgi transport ligand-binding domain superfamilySUPERFAMILY111126Ligand-binding domain in the NO signalling and Golgi transportcoord: 4..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc02g0038951.1Cmc02g0038951.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0048868 pollen tube development
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0048193 Golgi vesicle transport
cellular_component GO:0005801 cis-Golgi network
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:1990071 TRAPPII protein complex