Cmc02g0038381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc02g0038381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Nuclear transcription factor Y subunit B
Location	CMiso1.1chr02: 763899 .. 764318 (+)
RNA-Seq Expression	Cmc02g0038381
Synteny	Cmc02g0038381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACTATTACATTGTTGATGAGAAGAATATTATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATCCCACAAAAGGGGAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATCAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAATGAGAACAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCATGCTCTTGCTTAAGTTTAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTACTTTCCAACATCATCAACATGGAGTAGAGGATCATGAGTACAATTATGAACATCATCAATTATCATAA

mRNA sequence

ATGTGTAACTATTACATTGTTGATGAGAAGAATATTATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATCCCACAAAAGGGGAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATCAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAATGAGAACAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCATGCTCTTGCTTAAGTTTAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTACTTTCCAACATCATCAACATGGAGTAGAGGATCATGAGTACAATTATGAACATCATCAATTATCATAA

Coding sequence (CDS)

ATGTGTAACTATTACATTGTTGATGAGAAGAATATTATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATCCCACAAAAGGGGAAGATTTCAAAAGAAGCCAAGAAGACAATGCAAGAATGTGCAAATGAGTTCATCAGCTTTGTAACAAGTGAAGCAGCACAAAAATGTCACAATGAGAACAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCATGCTCTTGCTTAAGTTTAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTACTTTCCAACATCATCAACATGGAGTAGAGGATCATGAGTACAATTATGAACATCATCAATTATCATAA

Protein sequence

MCNYYIVDEKNIMGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYNYEHHQLS

Homology

[Close]

BLAST of Cmc02g0038381 vs. NCBI nr
Match: KAA0050888.1 (beta-galactosidase 15-like [Cucumis melo var. makuwa] >TYK10240.1 beta-galactosidase 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 9.9e-65
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYN 132
           RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYN
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYN 120

Query: 133 YEHHQLS 140
           YEHHQLS
Sbjct: 121 YEHHQLS 127

[Close]

BLAST of Cmc02g0038381 vs. NCBI nr
Match: XP_008451143.1 (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 8.1e-59
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHE 131
           RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDH+
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHD 118

[Close]

BLAST of Cmc02g0038381 vs. NCBI nr
Match: KAE8653368.1 (hypothetical protein Csa_006911 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 6.4e-48
Identity = 103/119 (86.55%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 11  NIMGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHN 70
           N MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFI+FVTSEAAQ+C N
Sbjct: 359 NTMGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQN 418

Query: 71  ENRRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKA-ITFQHHQHGVED 129
           ENRRTLNGDDIYWAF SLGLDNYAEASS  LLKFREAERIKASDKA ITFQ    G ED
Sbjct: 419 ENRRTLNGDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASDKAIITFQDQHAGEED 477

[Close]

BLAST of Cmc02g0038381 vs. NCBI nr
Match: XP_004135781.1 (nuclear transcription factor Y subunit B-4 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.5e-47
Identity = 102/117 (87.18%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFI+FVTSEAAQ+C NEN
Sbjct: 1   MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKA-ITFQHHQHGVED 129
           RRTLNGDDIYWAF SLGLDNYAEASS  LLKFREAERIKASDKA ITFQ    G ED
Sbjct: 61  RRTLNGDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASDKAIITFQDQHAGEED 117

[Close]

BLAST of Cmc02g0038381 vs. NCBI nr
Match: XP_038880507.1 (nuclear transcription factor Y subunit B-4-like [Benincasa hispida])

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-44
Identity = 99/128 (77.34%), Postives = 109/128 (85.16%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWE+LQLPIANV RIMKKI+PQK KISKEAK+TMQECA+EFISFV SEAA+KCH EN
Sbjct: 1   MGENWENLQLPIANVGRIMKKILPQKAKISKEAKETMQECASEFISFVASEAAEKCHKEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQH-HQHGVEDHEY 132
           RRTLNGDDI WA GS GLDNYAE S+  LLKFREAERIK S+KAITFQH HQ G +D   
Sbjct: 61  RRTLNGDDICWALGSCGLDNYAEVSAKYLLKFREAERIKTSNKAITFQHDHQQGEDD--- 120

Query: 133 NYEHHQLS 140
           + + HQLS
Sbjct: 121 DNDEHQLS 125

[Close]

BLAST of Cmc02g0038381 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.1e-29
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           E   LPIANV R+MK+I+P   KISKEAK+T+QECA EFISFVT EA++KCH ENR+T+N
Sbjct: 4   EDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVN 63

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREAER 110
           GDDI+WA  +LGLDNYA+A    L K+REAER
Sbjct: 64  GDDIWWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of Cmc02g0038381 vs. ExPASy Swiss-Prot
Match: Q32KW0 (Nuclear transcription factor Y subunit beta OS=Bos taurus OX=9913 GN=NFYB PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           + + LPIANV RIMK  IPQ GKI+K+AK+ +QEC +EFISF+TSEA+++CH E R+T+N
Sbjct: 55  QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREA 108
           G+DI +A  +LG D+Y E   + L KFREA
Sbjct: 115 GEDILFAMSTLGFDSYVEPLKLYLQKFREA 144

[Close]

BLAST of Cmc02g0038381 vs. ExPASy Swiss-Prot
Match: P25207 (Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           + + LPIANV RIMK  IPQ GKI+K+AK+ +QEC +EFISF+TSEA+++CH E R+T+N
Sbjct: 53  QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 112

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREA 108
           G+DI +A  +LG D+Y E   + L KFREA
Sbjct: 113 GEDILFAMSTLGFDSYVEPLKLYLQKFREA 142

[Close]

BLAST of Cmc02g0038381 vs. ExPASy Swiss-Prot
Match: Q6RG77 (Nuclear transcription factor Y subunit beta OS=Equus caballus OX=9796 GN=NFYB PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           + + LPIANV RIMK  IPQ GKI+K+AK+ +QEC +EFISF+TSEA+++CH E R+T+N
Sbjct: 55  QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREA 108
           G+DI +A  +LG D+Y E   + L KFREA
Sbjct: 115 GEDILFAMSTLGFDSYVEPLKLYLQKFREA 144

[Close]

BLAST of Cmc02g0038381 vs. ExPASy Swiss-Prot
Match: P25208 (Nuclear transcription factor Y subunit beta OS=Homo sapiens OX=9606 GN=NFYB PE=1 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           + + LPIANV RIMK  IPQ GKI+K+AK+ +QEC +EFISF+TSEA+++CH E R+T+N
Sbjct: 55  QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREA 108
           G+DI +A  +LG D+Y E   + L KFREA
Sbjct: 115 GEDILFAMSTLGFDSYVEPLKLYLQKFREA 144

[Close]

BLAST of Cmc02g0038381 vs. ExPASy TrEMBL
Match: A0A5D3CFV4 (Beta-galactosidase 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003870 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.8e-65
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYN 132
           RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYN
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHEYN 120

Query: 133 YEHHQLS 140
           YEHHQLS
Sbjct: 121 YEHHQLS 127

[Close]

BLAST of Cmc02g0038381 vs. ExPASy TrEMBL
Match: A0A1S3BQ87 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492519 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.9e-59
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHE 131
           RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDH+
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHD 118

[Close]

BLAST of Cmc02g0038381 vs. ExPASy TrEMBL
Match: A0A0A0LZ17 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569530 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 102/117 (87.18%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 13  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 72
           MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFI+FVTSEAAQ+C NEN
Sbjct: 1   MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60

Query: 73  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKA-ITFQHHQHGVED 129
           RRTLNGDDIYWAF SLGLDNYAEASS  LLKFREAERIKASDKA ITFQ    G ED
Sbjct: 61  RRTLNGDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASDKAIITFQDQHAGEED 117

[Close]

BLAST of Cmc02g0038381 vs. ExPASy TrEMBL
Match: A0A0A0LW12 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569510 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39
Identity = 87/105 (82.86%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           E L+LPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQ+C NENRRTLN
Sbjct: 9   EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLN 68

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHH 123
           GDDIYWAFGSLGLDNYAEASS  LL FRE ERIK  +K  +  +H
Sbjct: 69  GDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDNH 113

[Close]

BLAST of Cmc02g0038381 vs. ExPASy TrEMBL
Match: A0A5A7U6S7 (Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00150 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.7e-36
Identity = 80/97 (82.47%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           E L+LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQ+CH ENRRTLN
Sbjct: 9   EFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLN 68

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASD 115
           GDDI WAF S GLDNYAE  +  LLK+RE ERIK  +
Sbjct: 69  GDDICWAFASSGLDNYAEVFAKYLLKYREVERIKVDE 105

[Close]

BLAST of Cmc02g0038381 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-30
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 18  ESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLN 77
           E   LPIANV R+MK+I+P   KISKEAK+T+QECA EFISFVT EA++KCH ENR+T+N
Sbjct: 4   EDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVN 63

Query: 78  GDDIYWAFGSLGLDNYAEASSMLLLKFREAER 110
           GDDI+WA  +LGLDNYA+A    L K+REAER
Sbjct: 64  GDDIWWALSTLGLDNYADAVGRHLHKYREAER 95

[Close]

BLAST of Cmc02g0038381 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-25
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 22  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLNGDDI 81
           LPIANV RIMKK +P   KISK+AK+TMQEC +EFISFVT EA+ KC  E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 82  YWAFGSLGLDNYAEASSMLLLKFREAE 109
            WA  +LG ++Y E   + L +FRE E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Cmc02g0038381 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 111.3 bits (277), Expect = 6.3e-25
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 9   EKNIMGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKC 68
           E+++M +  + L LPIANV RIMK I+P   K+SKEAK+TMQEC +EFISFVT EA+ KC
Sbjct: 44  EESMMVKEQDRL-LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKC 103

Query: 69  HNENRRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHG 126
           H E R+T+NGDDI WA  +LG D+YA      L ++R  E  K +       HH  G
Sbjct: 104 HKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPN-------HHGKG 152

[Close]

BLAST of Cmc02g0038381 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-25
Identity = 49/87 (56.32%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 22  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLNGDDI 81
           LPIAN+ RIMK+ +P  GKI+K+AK+TMQEC +EFISFVTSEA+ KC  E R+T+NGDD+
Sbjct: 34  LPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDL 93

Query: 82  YWAFGSLGLDNYAEASSMLLLKFREAE 109
            WA  +LG ++Y +   + L+++RE E
Sbjct: 94  LWAMATLGFEDYIDPLKVYLMRYREME 120

[Close]

BLAST of Cmc02g0038381 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 22  LPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLNGDDI 81
           LPIANV RIMKK +P   KISK+AK+T+QEC +EFISF+T EA+ KC  E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 82  YWAFGSLGLDNYAEASSMLLLKFREAERIKAS 114
            WA  +LG ++Y E   + L K+RE E  K +
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVEGEKTT 117

The following BLAST results are available for this feature:

BLAST of Cmc02g0038381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050888.1	9.9e-65	100.00	beta-galactosidase 15-like [Cucumis melo var. makuwa] >TYK10240.1 beta-galactosi...	[more]
XP_008451143.1	8.1e-59	99.15	PREDICTED: beta-galactosidase 15-like [Cucumis melo]	[more]
KAE8653368.1	6.4e-48	86.55	hypothetical protein Csa_006911 [Cucumis sativus]	[more]
XP_004135781.1	2.5e-47	87.18	nuclear transcription factor Y subunit B-4 [Cucumis sativus]	[more]
XP_038880507.1	1.1e-44	77.34	nuclear transcription factor Y subunit B-4-like [Benincasa hispida]	[more]

BLAST of Cmc02g0038381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04027	3.1e-29	67.39	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q32KW0	1.4e-24	57.78	Nuclear transcription factor Y subunit beta OS=Bos taurus OX=9913 GN=NFYB PE=2 S...	[more]
P25207	1.4e-24	57.78	Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=...	[more]
Q6RG77	1.4e-24	57.78	Nuclear transcription factor Y subunit beta OS=Equus caballus OX=9796 GN=NFYB PE...	[more]
P25208	1.4e-24	57.78	Nuclear transcription factor Y subunit beta OS=Homo sapiens OX=9606 GN=NFYB PE=1...	[more]

BLAST of Cmc02g0038381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFV4	4.8e-65	100.00	Beta-galactosidase 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BQ87	3.9e-59	99.15	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492519 PE=3 SV=1	[more]
A0A0A0LZ17	1.2e-47	87.18	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G5695...	[more]
A0A0A0LW12	1.2e-39	82.86	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G5695...	[more]
A0A5A7U6S7	4.7e-36	82.47	Nuclear transcription factor Y subunit B-4 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Cmc02g0038381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09030.1	2.2e-30	67.39	nuclear factor Y, subunit B4	[more]
AT5G47640.1	4.8e-25	59.77	nuclear factor Y, subunit B2	[more]
AT2G47810.1	6.3e-25	51.28	nuclear factor Y, subunit B5	[more]
AT3G53340.1	8.2e-25	56.32	nuclear factor Y, subunit B10	[more]
AT4G14540.1	1.1e-24	55.43	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 87..105 score: 30.26 coord: 49..67 score: 48.68 coord: 68..86 score: 26.79
None	No IPR available	PANTHER	PTHR11064:SF147	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4-LIKE	coord: 20..126
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 12..138 e-value: 7.6E-35 score: 121.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 19..115
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 21..84 e-value: 3.2E-25 score: 88.1
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 20..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc02g0038381.1	Cmc02g0038381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding