Cmc01g0034411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0034411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 34052805 .. 34053620 (+)
RNA-Seq Expression	Cmc01g0034411
Synteny	Cmc01g0034411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCCAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCATTTCGTTCCAGGTATGGACATTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAACATTTATGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCGGTCACCGGTTGGACCCAACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAATAG

mRNA sequence

ATGACCCCCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCCAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCATTTCGTTCCAGGTATGGACATTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAACATTTATGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCGGTCACCGGTTGGACCCAACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAATAG

Coding sequence (CDS)

ATGACCCCCGCAGAGCTGAAAGAATTAAAGGTGCAGTTACAAGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCCACAGTGTTCTCCAAGATTGATCTTCGGTCGGGATACCATCAGCTGAGGATTAAGGATGGTGATGTACCAAAGACAGCATTTCGTTCCAGGTATGGACATTACGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGATATACTCCAAGACGGAGGCCGAACATGAGGAACATTTATGTATAGTTTTGCAAACACTTCGGGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTGGATCCAGCTAAGATAGAGGCGGTCACCGGTTGGACCCAACCTTCCACAGTCAGTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAATAG

Protein sequence

MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK

Homology

[Close]

BLAST of Cmc01g0034411 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 545.8 bits (1405), Expect = 2.1e-151
Identity = 268/271 (98.89%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1    MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 1183 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1242

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1243 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1303 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1333

[Close]

BLAST of Cmc01g0034411 vs. NCBI nr
Match: KAA0051051.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 544.3 bits (1401), Expect = 6.1e-151
Identity = 267/271 (98.52%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 707 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 766

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 767 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKEGDVPKTAFRSRYGHYEFIVMSFGLT 826

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 827 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 886

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 887 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 946

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 947 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 977

[Close]

BLAST of Cmc01g0034411 vs. NCBI nr
Match: KAA0053368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 543.9 bits (1400), Expect = 7.9e-151
Identity = 267/271 (98.52%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1    MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 768  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 827

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 828  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 887

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            NAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 888  NAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 947

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 948  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1007

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1008 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1038

[Close]

BLAST of Cmc01g0034411 vs. NCBI nr
Match: KAA0040871.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 543.5 bits (1399), Expect = 1.0e-150
Identity = 266/271 (98.15%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1    MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 789  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 848

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 849  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 908

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 909  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 968

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 969  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1028

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1029 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1059

[Close]

BLAST of Cmc01g0034411 vs. NCBI nr
Match: KAA0041715.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 543.1 bits (1398), Expect = 1.3e-150
Identity = 265/271 (97.79%), Postives = 268/271 (98.89%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE+HLC+VLQTLRDNKLYAKFS
Sbjct: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLCMVLQTLRDNKLYAKFS 180

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVV KAGVSVDPAKIEAVT WT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 181 KCEFWLKQVSFLGHVVYKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 240

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 271

[Close]

BLAST of Cmc01g0034411 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-56
Identity = 108/271 (39.85%), Postives = 174/271 (64.21%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFSK 186
           APA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENFS 246
           CEF  ++ +FLGHV++  G+  +P KIEA+  +  P+   E+++FLGL GYYR+F+ NF+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIATPLTQLTRKGAPFVWSKACEDS-FQNLK 272
            IA P+T+  +K      +    DS F+ LK
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

[Close]

BLAST of Cmc01g0034411 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.0e-56
Identity = 101/251 (40.24%), Postives = 160/251 (63.75%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFSKC 187
           PA F   MN + R  L+   +V++DDI+I+S +  EH   + +V   L D  L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENFSR 247
           EF  K+ +FLGH+V+  G+  +P K++A+  +  P+   E+R+FLGL GYYR+F+ N++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IATPLTQLTRK 254
           IA P+T   +K
Sbjct: 461 IAKPMTSCLKK 471

[Close]

BLAST of Cmc01g0034411 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-56
Identity = 102/271 (37.64%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H+  VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEF   QV F+G+ +S+ G +     I+ V  W QP    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           S++  PL  L +K   + W+     + +N+K
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc01g0034411 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-56
Identity = 102/271 (37.64%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H+  VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEF   QV F+G+ +S+ G +     I+ V  W QP    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           S++  PL  L +K   + W+     + +N+K
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc01g0034411 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.5e-56
Identity = 102/271 (37.64%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H+  VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEF   QV F+G+ +S+ G +     I+ V  W QP    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           S++  PL  L +K   + W+     + +N+K
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc01g0034411 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.0e-151
Identity = 268/271 (98.89%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1    MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1063 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 1122

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 1123 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 1182

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 1183 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 1242

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 1243 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1302

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1303 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1333

[Close]

BLAST of Cmc01g0034411 vs. ExPASy TrEMBL
Match: A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)

HSP 1 Score: 544.3 bits (1401), Expect = 2.9e-151
Identity = 267/271 (98.52%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 707 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 766

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIK+GDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 767 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKEGDVPKTAFRSRYGHYEFIVMSFGLT 826

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 827 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 886

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 887 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 946

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 947 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 977

[Close]

BLAST of Cmc01g0034411 vs. ExPASy TrEMBL
Match: A0A5A7UE75 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00240 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 3.8e-151
Identity = 267/271 (98.52%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1    MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 768  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 827

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 828  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 887

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            NAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 888  NAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 947

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 948  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1007

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1008 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1038

[Close]

BLAST of Cmc01g0034411 vs. ExPASy TrEMBL
Match: A0A5A7TGS7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00240 PE=4 SV=1)

HSP 1 Score: 543.5 bits (1399), Expect = 5.0e-151
Identity = 266/271 (98.15%), Postives = 269/271 (99.26%), Query Frame = 0


Query: 1    MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN+
Sbjct: 789  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNK 848

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 849  YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 908

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHL IVLQTLRDNKLYAKFS
Sbjct: 909  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNKLYAKFS 968

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 969  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1028

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 1029 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 1059

[Close]

BLAST of Cmc01g0034411 vs. ExPASy TrEMBL
Match: A0A5A7TJV4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00490 PE=4 SV=1)

HSP 1 Score: 543.1 bits (1398), Expect = 6.5e-151
Identity = 265/271 (97.79%), Postives = 268/271 (98.89%), Query Frame = 0


Query: 1   MTPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M PAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLCIVLQTLRDNKLYAKFS 180
           NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHE+HLC+VLQTLRDNKLYAKFS
Sbjct: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLCMVLQTLRDNKLYAKFS 180

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTQPSTVSEVRSFLGLAGYYRRFVENF 240
           KCEFWLKQVSFLGHVV KAGVSVDPAKIEAVT WT+PSTVSEVRSFLGLAGYYRRFVENF
Sbjct: 181 KCEFWLKQVSFLGHVVYKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 240

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLK
Sbjct: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLK 271

[Close]

BLAST of Cmc01g0034411 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 7.9e-24
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 162 HLCIVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTQPST 221
           HL +VLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW +P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLK 272
            +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W++    +F+ LK
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of Cmc01g0034411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047433.1	2.1e-151	98.89	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051051.1	6.1e-151	98.52	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053368.1	7.9e-151	98.52	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040871.1	1.0e-150	98.15	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0041715.1	1.3e-150	97.79	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0034411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.2e-56	39.85	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.0e-56	40.24	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	4.5e-56	37.64	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.5e-56	37.64	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.5e-56	37.64	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0034411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV57	1.0e-151	98.89	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UC07	2.9e-151	98.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7UE75	3.8e-151	98.52	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold42...	[more]
A0A5A7TGS7	5.0e-151	98.15	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34...	[more]
A0A5A7TJV4	6.5e-151	97.79	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G00490 PE=...	[more]

BLAST of Cmc01g0034411 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.9e-24	45.54	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..195 e-value: 5.4E-29 score: 101.3
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 10.474539
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 8.6E-88 score: 295.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..271 e-value: 9.5E-25 score: 88.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 8.6E-88 score: 295.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..271
None	No IPR available	PANTHER	PTHR24559:SF363	SUBFAMILY NOT NAMED	coord: 2..271
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 2.25724E-99 score: 286.414
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0034411.1	Cmc01g0034411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding