Cmc01g0034031 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0034031
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description39S ribosomal protein L41-A, mitochondrial-like
LocationCMiso1.1chr01: 33796567 .. 33799594 (-)
RNA-Seq ExpressionCmc01g0034031
SyntenyCmc01g0034031
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTAGCTTAATAAAACCTTTATTTTACTTTTTCCTCACCACTGGCTTTCGTTCTCTCTTTTTCTTATTCTCCGCTGCCGCCGTAGGTTCAACTGTTCATCTCTTACCTTCAGCGGGTTTAAATTCCACCGCCGTAGGATAACTCCGACCGCCGCTTTAACCCCGCGAAGACACACGGACCACCCGTCTGACAGATAACCTAGCCGAATAAATTTTCCTTAAAAGGTTCTTTTATTGTTCTTTTGTTTGATTTAGGCGATAAACTTGAGAAATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTTCATACACGCAAAGGTATTCATTTCTCCTCCATCGATCCTAATATAATTTTAGGTTTTATGCTTGTTTATATTGGCTGATAAAAGGTTTGGTTATTTGATAAATTGATTTCGAGTTAGTGCTGCTAGATCAAATTGTAATTTAGTAAAGAGTTGAAAATCATTATTGCTTCTAGGAATGTGATGTGATTAGTAGGCTGTTGAGTTACTTCTAATACTAGATTTTTCTATTTGAATTTTGTATGGTTCTACCGCAAATTGCTGTTGGTTGTTTAAAATGTGTAAATTTCTTGCAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGGTATTTTTGCTAGTAGTAATTTATTCTAAAATTTAGAACTGATATCTCCCTTTTCTATCTACAACACATTTAAGTATTTTGAATAGGATTGTGGAGACTAAAATAGGCTAGCAGAGAAAAGGTGTACAAAATTTGTATTGGCTTTGTGTGCTTCCCGTAGTTCTTGGCTAAACTTTTCTTTCTTTTCTTTTATCACTATTGTGGGTGGGGAAATCAACCTCTAACCTCGAAATGAATTATTTCTTGGGTTACTTTTTGGTGTCCCTTTTGAAATTTATTAGATTTATATGATTTCCTGAAATCTGATTTCGGATTTGTATTCTCTCCTTATTTCCTTTAAATGAATTATTTCTTGCTGGGTATTTCGTGAGTGATTTAGTGCAGAGAGCTTTTATGCTACAGTTTTTCCTAATAGCTTCCCAAATGATTCTTTTGAGCAAGTACTTGTGGGGAAAGTAGAGGTAGGGGACTTTTGTCTGCTCTGCTAAGGTAATTTGTTTCTGGCTGGTGGTAGAGCAACTAGCAGTCACCTTTACCTTTGAAGCTTTACTGTCTTATGGGGAGAGCTTGGAACTTTTGTTTGCTAAGGAAATTTGTTTATGTCTGGTTACAGGGGAACTAGCTCTTGCTAATTGACCTTTGAAGCTTTCGCTGCTCTTTTAAGAGTTTTGTCATAATTCCTTATAACAAGACATGACACAATCCTAAACCCTAAGCCCCAAAATCCTATAGGCATTTTGTTATGTAGTTGGATTCCCTTCTTGTAGAGTGAGTTCTTACGTGTATTTTTCCATTTTTTTTCTTAATGAAGGTTGTATTTTATTAAAAAGAAAAAGAAAAAGAAAAAGAAAGAGTTTTAACATAATACTGTATAACAAGGCATTGAAATGTCAAGATTGACGATTCCTTACAGCTCACAATTTCAATCCCATGCAACATTTTGATATTTATTTGTTCTTGTATGTTTCATGTTTAGAAGATTAACATGCATAAGAATGTCATTAATTGATTTCATTGTAGGTTGGCCTACATGTCCTATTTAGAGGTCAACTCGAACAGTTGAAAAAAACCAAACGTCACTCTTGTTACTACCATTCAAATGTCACTTGTGTCAATGTTACTTAGAATTTTTCTTGGAGGCAAAACCGTGATATATATAGCTGGTTTTGTGCAAACTATATGTTTTTCAGTGCCTCCTACTTAGTTTGCTGTTCTCTTCTGTTGTGTGTATTTTTCACTTTGCGTCATTCATTGGTTGAGTATACCCATTAGAGCTTTCTTGTGTTACACCATTTTTTTATGGAACTTGGTTATTGTATTCTAATTATATATCCTGTCATGTTAGGATAAATATGGCAGGCTGCTTGTTCATGAGTTCTTGAAACTTTCATTAATTTTGTTATTTTTACATGTTTGGCACATCACATTAACTATAGATATTCAACTTAAAAGGATTGGATGTCAATTTTGTGTTGTCAAACTGCATCTTAGATTTACATAAGAGTATTGAATCCTGGATAAAGATATAGTTTGTTCTTTGTTTGCAGCTCAAGCCTTATGTATCTCAATGCCCCATAGAACTTAATACAAGTGACAACACTGAATCAGCTAAATCATAAGCGAAGAGGTAATAACATCTTGTAATGCTCTTTGTTCTTTTCCCCTCAACTTAATTTGATTTAGCACAATTGACGTATAGTGGTATTTGATTCAAATCCTAAATTTTCTTTTACTTCAGTTTCGAGTAATTATTAAGTCAATTGGGCCTTAATTAGCTTTAATTAAAATGTTCTTTTAGGTAAACAGATTTAGTAGTTTAATTTCTAATTCTCCGCTGCCAAGTAGGTTTGTACTGAGCCATCAACATATATTGCAGGTAAATATGAGACGATGTTGGTGATGGCATCGAAGGGACTTGAAGCAAAAGACCTAGAATTCTTTTACTAGTTGTTGTTAGCTAGTTCAGGCTCTATTTGTTTGGTCTTGAATTGAAAAACTTGTTTCGAAGAACAAATAATCGAGGAGGAAAACAAAGACAGGACGTTTGGAGATTTGAAGTTTTTGGAAGTTGTGTTTGGTTTTAAATTTGACAAGTTTTAAGATTATCGTGCCTTTTTGCCTTGTTGGCGATGTACACTCGATGGAGGCAAATGATGCACTAAATTTATGCCCAAAAAAACAATGACCATATATTATTAAATTTTATTTTGTACTTGGATAAGATAGAATTTGGATTTTTGTTTCAAAATTACGTGACTTACTCACC

mRNA sequence

TTTTTAGCTTAATAAAACCTTTATTTTACTTTTTCCTCACCACTGGCTTTCGTTCTCTCTTTTTCTTATTCTCCGCTGCCGCCGTAGGTTCAACTGTTCATCTCTTACCTTCAGCGGGTTTAAATTCCACCGCCGTAGGATAACTCCGACCGCCGCTTTAACCCCGCGAAGACACACGGACCACCCGTCTGACAGATAACCTAGCCGAATAAATTTTCCTTAAAAGGTTCTTTTATTGTTCTTTTGTTTGATTTAGGCGATAAACTTGAGAAATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTTCATACACGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGCTCAAGCCTTATGTATCTCAATGCCCCATAGAACTTAATACAAGTGACAACACTGAATCAGCTAAATCATAAGCGAAGAGGTAAATATGAGACGATGTTGGTGATGGCATCGAAGGGACTTGAAGCAAAAGACCTAGAATTCTTTTACTAGTTGTTGTTAGCTAGTTCAGGCTCTATTTGTTTGGTCTTGAATTGAAAAACTTGTTTCGAAGAACAAATAATCGAGGAGGAAAACAAAGACAGGACGTTTGGAGATTTGAAGTTTTTGGAAGTTGTGTTTGGTTTTAAATTTGACAAGTTTTAAGATTATCGTGCCTTTTTGCCTTGTTGGCGATGTACACTCGATGGAGGCAAATGATGCACTAAATTTATGCCCAAAAAAACAATGACCATATATTATTAAATTTTATTTTGTACTTGGATAAGATAGAATTTGGATTTTTGTTTCAAAATTACGTGACTTACTCACC

Coding sequence (CDS)

ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGGAAGCGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTTCATACACGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGCTCAAGCCTTATGTATCTCAATGCCCCATAGAACTTAATACAAGTGACAACACTGAATCAGCTAAATCATAA

Protein sequence

MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS
Homology
[Close]
BLAST of Cmc01g0034031 vs. NCBI nr
Match: XP_008461075.1 (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 9.9e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. NCBI nr
Match: XP_004135839.1 (39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >KGN45301.1 hypothetical protein Csa_015853 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDLSDFKLKPYVSQCPIEL TSDN ESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 2.7e-42
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDL+DFKLKPYVSQCPIE+ TSDN ESAKS
Sbjct: 61 YVVPDLTDFKLKPYVSQCPIEVKTSDNNESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. NCBI nr
Match: XP_022143129.1 (39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          Y+VPDL+DFKLKPYVSQCP E+ TS+ +ESAKS
Sbjct: 61 YIVPDLTDFKLKPYVSQCPTEVKTSEASESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. NCBI nr
Match: XP_022982189.1 (39S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 4.8e-39
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGL R MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDL+DFKLKPYVSQCPIE  TS+  ES KS
Sbjct: 61 YVVPDLTDFKLKPYVSQCPIEAKTSEAGESTKS 93

[Close]
BLAST of Cmc01g0034031 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.7e-08
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 3  LGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  + R + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLISKIARGLVRGADRMAE-CTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 60

Query: 63 VPDLSDFKLKPYVS 77
          VPDL+ FKLKPYVS
Sbjct: 61 VPDLTGFKLKPYVS 73

[Close]
BLAST of Cmc01g0034031 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVS-QCPIELN 84
          +SKR PR + K +  K TG +T    +V + E +P +VVPDL+ FKLKPYV+ + P  ++
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGID 81

[Close]
BLAST of Cmc01g0034031 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVS-QCPIELN 84
          +SKR PR + K +  K TGF+T +  +V + E +P +VVPDL+ FKLKPYV+ + P  ++
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNR-KFVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGID 81

[Close]
BLAST of Cmc01g0034031 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 3  LGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  + R + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLITKIARGLVRGADRMAE-CTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 60

Query: 63 VPDLSDFKLKPYVS 77
          VPDL+ FKLKPYVS
Sbjct: 61 VPDLTGFKLKPYVS 73

[Close]
BLAST of Cmc01g0034031 vs. ExPASy Swiss-Prot
Match: Q8IXM3 (39S ribosomal protein L41, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL41 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 0 

Query: 25 SSKRAPRDY--YKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVS 77
          +SKR PR +   KG+  K  GF T    +V + E +P +VVPDL+ FKLKPYVS
Sbjct: 22 TSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVS 75

[Close]
BLAST of Cmc01g0034031 vs. ExPASy TrEMBL
Match: A0A1S3CEC5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103499774 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.8e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. ExPASy TrEMBL
Match: A0A0A0KBX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.1e-44
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDLSDFKLKPYVSQCPIEL TSDN ESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          Y+VPDL+DFKLKPYVSQCP E+ TS+ +ESAKS
Sbjct: 61 YIVPDLTDFKLKPYVSQCPTEVKTSEASESAKS 93

[Close]
BLAST of Cmc01g0034031 vs. ExPASy TrEMBL
Match: A0A6J1J3V5 (39S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481090 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 84/93 (90.32%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGL R MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLARSMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 94
          YVVPDL+DFKLKPYVSQCPIE  TS+  ES KS
Sbjct: 61 YVVPDLTDFKLKPYVSQCPIEAKTSEAGESTKS 93

[Close]
BLAST of Cmc01g0034031 vs. ExPASy TrEMBL
Match: A0A2C9U139 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G063900 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.8e-39
Identity = 79/92 (85.87%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLILG+GR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MPLGLILGIGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAK 93
          YVVPDL+DFKLKPYVSQCP E+ T++++E+AK
Sbjct: 61 YVVPDLTDFKLKPYVSQCPREVKTTESSEAAK 92

[Close]
BLAST of Cmc01g0034031 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 155.6 bits (392), Expect = 1.9e-38
Identity = 70/89 (78.65%), Postives = 84/89 (94.38%), Query Frame = 0 

Query: 4  GLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+GR  RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLSDFKLKPYVSQCPIELNTSDNTESAK 93
          PDL+ FKLKPYVSQCPI++NT+++TE++K
Sbjct: 66 PDLTGFKLKPYVSQCPIQVNTNESTEASK 94

[Close]
BLAST of Cmc01g0034031 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 154.5 bits (389), Expect = 4.3e-38
Identity = 69/89 (77.53%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 4  GLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+GR  RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLSDFKLKPYVSQCPIELNTSDNTESAK 93
          PDL+ FKLKPYVSQCP+++NT+++TE++K
Sbjct: 66 PDLTGFKLKPYVSQCPLQVNTNESTEASK 94

[Close]
BLAST of Cmc01g0034031 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 143.7 bits (361), Expect = 7.6e-35
Identity = 69/93 (74.19%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1   MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
           M LGL+ G+GR  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPN
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 134

Query: 61  YVVPDLSDFKLKPYVSQCPIELN-TSDNTESAK 93
           YVVPDL+ FKLKPYVSQCP+++N T+++TE++K
Sbjct: 135 YVVPDLTGFKLKPYVSQCPLDVNKTNESTEASK 166

The following BLAST results are available for this feature:
BLAST of Cmc01g0034031 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461075.19.9e-45100.00PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo][more]
XP_004135839.11.9e-4397.8539S ribosomal protein L41-A, mitochondrial [Cucumis sativus] >XP_031744891.1 39S... [more]
XP_038897038.12.7e-4294.6239S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida][more]
XP_022143129.12.5e-4090.3239S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1... [more]
XP_022982189.14.8e-3990.3239S ribosomal protein L41-A, mitochondrial-like [Cucurbita maxima][more]
BLAST of Cmc01g0034031 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6DJI47.7e-0843.2439S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a... [more]
Q9CQN71.0e-0744.2639S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1... [more]
Q5BJX11.0e-0745.9039S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41... [more]
Q6INF31.3e-0743.2439S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b... [more]
Q8IXM31.9e-0650.0039S ribosomal protein L41, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL41 PE=1 ... [more]
BLAST of Cmc01g0034031 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CEC54.8e-45100.0039S ribosomal protein L41-A, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0KBX49.1e-4497.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1[more]
A0A6J1CNE91.2e-4090.3239S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1J3V52.3e-3990.3239S ribosomal protein L41-A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A2C9U1398.8e-3985.87Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G063900 PE=3 SV=... [more]
BLAST of Cmc01g0034031 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G39800.11.9e-3878.65Mitochondrial ribosomal protein L27 [more]
AT5G40080.14.3e-3877.53Mitochondrial ribosomal protein L27 [more]
AT4G09012.17.6e-3574.19Mitochondrial ribosomal protein L27 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019189Ribosomal protein L27/L41, mitochondrialPFAMPF09809MRP-L27coord: 24..85
e-value: 5.4E-18
score: 64.9
IPR019189Ribosomal protein L27/L41, mitochondrialPANTHERPTHR21338MITOCHONDRIAL RIBOSOMAL PROTEIN L41coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0034031.1Cmc01g0034031.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome