Cmc01g0033261 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0033261
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	40S ribosomal protein S12
Location	CMiso1.1chr01: 33455756 .. 33457847 (-)
RNA-Seq Expression	Cmc01g0033261
Synteny	Cmc01g0033261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCATAAACCCCTAATCTTTTCCACAAACTCCCTCCTCTCAGTTCTGTCGCCGCCGCCATCTCTCAATCTCTGGTAAGTTTCTCTATCTCTCTCTAAATCCCCGGCCAAAATTTCTTGTTCTCTTCCAGCATGTCCATTGTTATCCCCTTCTATTTGCTCAGAAATACGCAGATCGTCTCCCTTCATCCTGCCCTTCCTCAGATTTCCATATGGCAGCTGTTTATTGTGATCTCATACTTGTTTGATTATCATATTCGAAAATCCGAACCGATTAGTGGTTTACTCTATATGTCTTTGTTCTTGATTCAAACTGGTTGTTACAGGTTTCATTATATTTCTTTTATCTAATTATTATTATTATTTTTTTTTTGTCTTACAGATTTTCGTGCAATAGGAAGGAGGTAGAACTTCTAAATCAAGAAGAAAAATGTCAGCGTGAGTGGTTTATTATAATTGCTAGCTTCCACGTTAATTCCCATTTTTGTGTTGCATCTGAGCGCGATTTTTCCTGAATATCTTATAAATAAATGATGACTTGTTTTGTTTAGAAGTAGAATTTGTTGCTTGCAATCGACTTTTAAGAGTGTTTGGTATTCTTCTGTATGAATAAGAATAGAGTTGGAAATTTGATTTCTGAAGGCGACGAGACAATCAAACTTGATGTCTGTCTTGAGATGTAAATTATATGTTTTGGTCACTGGTTAAATAAAATGTAGAGTTTTAAAGTTCAGTATGTGGTTTATACGTCTGTAATAGTTCTTTGTATGGGACTGAGGGTTGCTGGGGAGTCGAGATTGCTATATTACACGTTCAATAGTGAACTATTATTGAAGTTGAGGCATTTCTTTTTGGTAATGTCATGATATTGAGTCGATGACTATGCAATTGTCTTCCATTGTTGACAGAACCTTAAAGGGGTATTGTATTTCTTTTCTAATTTGGTTTTTTTTTGCAGTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATCGAGACTGCCCTGCAGATTGTTCTTAGAAAATCATTGGCTCATGGTGGACTTGTTCGAGGTCTTCATGAGAGTGCTAAAGCTATTGAGAAACATGCTGCACAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAATTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGTCTGGTGTAAGTGTTCAATCTTATTTAGAGTCAGTTTTTAACATTCATTCTGCAGTAAAATTGTTTCCCAATTGCTCTTTTTCATTATTTAGCTACATGTAAAACATGTTCTGGATTATATTAGGATATAAACATAACTAATATTTTCAAATGCAGTGGATTTGTTTGATCCTCATATAAATTGACCTGCTAACACTACCATGATGTATCAGTGTCTGCATTCTACACCATCAGCATCTACATATTTTAATGGGTTCAGGAGAATTCATTTTTTTCCTTCCATATTTGGTCTAATGCAGCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTCGTAGTTAAGGTACATATATATGTCCATTCACTTTCGTAGCAAATATTCTGTTCCTCCTCTTTTCATACAACCTCTTTACTTATGTTTTGAATGTGTTTGTTTATCCACAGGACTTTGGGGAAGACCACGAGGCGCTTCACATCGTGCAGAAGCATGTGAGTTCAAGTTGATTACCAAAATGGTGTCTGTTGAGATTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCGTTAGTTATGTCTAGATTTGGTGCACTGTTGTTGCTTAAACACTTTTACCTTCACCCTATAATGTGTTTTTCTTTATCGATTGATTGGAAAGACTAGTTTTTATCATCATCCGAGTCCATTGACGTGGAGCTCATTATCATTCCGGCCAACAGAACAATTTATCTATCAATAGTCTTCTTGCCCATGAGAAAATGTGGAATTGATACTTATCATCTTCTTTTTTTTCTTGATTCCATATCTAGATTTTATTGGTGCATTTTTAAA

mRNA sequence

CTTTCATAAACCCCTAATCTTTTCCACAAACTCCCTCCTCTCAGTTCTGTCGCCGCCGCCATCTCTCAATCTCTGATTTTCGTGCAATAGGAAGGAGGTAGAACTTCTAAATCAAGAAGAAAAATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATCGAGACTGCCCTGCAGATTGTTCTTAGAAAATCATTGGCTCATGGTGGACTTGTTCGAGGTCTTCATGAGAGTGCTAAAGCTATTGAGAAACATGCTGCACAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAATTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGTCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAAGACCACGAGGCGCTTCACATCGTGCAGAAGCATGTGAGTTCAAGTTGATTACCAAAATGGTGTCTGTTGAGATTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCGTTAGTTATGTCTAGATTTGGTGCACTGTTGTTGCTTAAACACTTTTACCTTCACCCTATAATGTGTTTTTCTTTATCGATTGATTGGAAAGACTAGTTTTTATCATCATCCGAGTCCATTGACGTGGAGCTCATTATCATTCCGGCCAACAGAACAATTTATCTATCAATAGTCTTCTTGCCCATGAGAAAATGTGGAATTGATACTTATCATCTTCTTTTTTTTCTTGATTCCATATCTAGATTTTATTGGTGCATTTTTAAA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATCGAGACTGCCCTGCAGATTGTTCTTAGAAAATCATTGGCTCATGGTGGACTTGTTCGAGGTCTTCATGAGAGTGCTAAAGCTATTGAGAAACATGCTGCACAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAATTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGTCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAAGACCACGAGGCGCTTCACATCGTGCAGAAGCATGTGAGTTCAAGTTGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS

Homology

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BLAST of Cmc01g0033261 vs. NCBI nr
Match: XP_008461174.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis melo] >KAA0058716.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >TYK10523.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 282.7 bits (722), Expect = 1.7e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cmc01g0033261 vs. NCBI nr
Match: XP_004135873.1 (40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa_015906 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 8.4e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 6.0e-70
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAP PALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 6.0e-70
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.7e-55
Identity = 101/134 (75.37%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 6   VAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQ+V++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVVKDFGE 125
           +QPDYVKLVKALCAEHN +L+TVPSAKTLGEW+GLCKID+EGKARKVVGCSC+VVKD+GE
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGE 128

Query: 126 DHEALHIVQKHVSS 140
           + E L+IVQ++V S
Sbjct: 129 ESEGLNIVQQYVKS 142

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BLAST of Cmc01g0033261 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.5e-50
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cmc01g0033261 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-48
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Cmc01g0033261 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH  NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Cmc01g0033261 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH  NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of Cmc01g0033261 vs. ExPASy TrEMBL
Match: A0A5A7UX10 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001740 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.2e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cmc01g0033261 vs. ExPASy TrEMBL
Match: A0A1S3CDM3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.2e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSSS
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Cmc01g0033261 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSS 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Cmc01g0033261 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cmc01g0033261 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cmc01g0033261 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-51
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSS 141
           C+V+KDFGE+  AL+IV+KH+ S+
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Cmc01g0033261 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 9.7e-50
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of Cmc01g0033261 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 193.7 bits (491), Expect = 9.7e-50
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEW+GLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of Cmc01g0033261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461174.1	1.7e-72	100.00	PREDICTED: 40S ribosomal protein S12 [Cucumis melo] >KAA0058716.1 40S ribosomal ...	[more]
XP_004135873.1	8.4e-72	98.57	40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa...	[more]
XP_022954225.1	2.1e-70	97.14	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]
XP_038896811.1	6.0e-70	96.43	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_022991483.1	6.0e-70	96.43	40S ribosomal protein S12-like [Cucurbita maxima]	[more]

BLAST of Cmc01g0033261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	9.7e-55	75.37	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	5.5e-50	67.36	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	1.4e-48	68.53	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	2.7e-36	58.68	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	2.7e-36	58.68	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Cmc01g0033261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UX10	8.2e-73	100.00	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CDM3	8.2e-73	100.00	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1	[more]
A0A0A0KA08	4.1e-72	98.57	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]
A0A6J1GQC3	1.0e-70	97.14	40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=...	[more]
A0A6J1JWC7	2.9e-70	96.43	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1	[more]

BLAST of Cmc01g0033261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	3.9e-51	67.36	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	3.9e-51	67.36	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	3.9e-51	67.36	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	9.7e-50	68.53	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	9.7e-50	68.53	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 85..106 score: 55.79 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 7..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 4..140 e-value: 8.1E-53 score: 179.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 3.8E-26 score: 90.6
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 7..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0033261.1	Cmc01g0033261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome