Cmc01g0032551 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0032551
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein 2, chloroplastic
Location	CMiso1.1chr01: 32963160 .. 32965937 (+)
RNA-Seq Expression	Cmc01g0032551
Synteny	Cmc01g0032551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCACAAGTTTAGCTCAATCTCTTGTTCTTCTTCTTCTCGACTGGATAAACCTCTGGCCACGCCTCAGGGTTCTGTGCTTTCTTCACTCTTTTCTCTCGACTCGGGCTCTGCACACCAAAAATGGCTTCCATCTCATCCATACTAACCCCTACCAATCTCATTCACACCTCCAAAAAACCCACCGAAATTTCACAAGCTTTATCCTCTCAATTTCTCCGGCCAATCTCCTTTCACCCTCCTCATATCCTTCTCCGCATCTCTCCCGTCGCCGCCAGACCCCCCACGAGACTCTTCGCCGTTGCAGAAGCCGCGACGCAGGGTGCCAGTTCGGTGGCGGAAAGGAAATTGTACATTGGGAACATACCTAGAAATGTGAATAATGAGGAGCTTACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAAGTGAGTAATTTCTGCTTGGATTTCTTCTTCTTCTTTTTTTCATTTTCCTCTTTTGGGTATCCTGAATTTTGTCTTATACCCTGCGTCGTATTGTTGATTTTGAGGCTTGCTGGATTCTCCAGGGTTTATACGTGCTTAGTTTGTTTTGAACCTTGAGTTTACTTGTTTATAAATTCATCAAAACTGCTGAATGTAGCTTGATTTTGGGCTGAATTTGTCTACCCTATACTTCCTGAATAGTGTTTGGACAAGCTATTGAGGGTTCTTTTACATTTGAAGTTGGATTTGGTTCTTGTCATTTGTAGTTTGAGCTCTAGAATACGATAAGATATACTTCGATACCCGCTATAATAACTCTAGATTTAAATCTACGACGAGTACGTGTCAATTACCGTTAAAACTGTGCTTTCTATGGGCGAGATAACACTTGGTAATTTATGTTTATTGCTTATTTGTAATTTCCTTTCCAAAATGTTCATTCCAACTTGAATATCTTATGCCATATGGTCATTTTCAAAAAGTGGCTAGCTATTTCTCTTGAACTCCGGGGCAAAACACTTGAACCGAACGGTCCTTTAAATCAAGTAGCTAGCAACATTTTTATTTTTTAATGAATTAGCTCTTGCAATCTATTGATTTCAAGAATTCTAGCATCCCTTTGTTCTTAATCTTCACTTGGTAACTGTTGGTGTTGGCCTTAAAGAATCTTATTTTGTTCCATTTCCAGGTCATGTATGACAAATACTCTGGGAGAAGTCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGTAAGTTCATTTTAATATCTAGTTATCTACAAAGTGCAACTAAAGTTGAAAAGAAAAGAGAACAAAGGAATTGTTTCTTACCGTTGACTAGATGGGATTGAGTATGCTGACAATATTTGTTTAATGGCAGGAAGTCGGAGGACGAAAAATTAAAGTTAACATAACAGAAAAACCTGTGGTTAATACAGTTGACCTGTCAATTCTTCAGGCAGAGGAATCTCAATTCATTGACAGTCCTTACAAAGTATATGTAGGAAACATTTCGAGTACAGTTTCTACCGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTGTAAGTAACTTGCTTTGGTTCTCATATGATTCATATCAAAATGCCGTGGCTCTGATATCGGTTTATGCACACTCTACCTCTCTTTTTAGTCCATATCACATATAATGTCTCATGGTTTAAATTTCATGCATTGGCAACACTCTTGCTCCTGTTTGGTTGACACTGTCTAGCAGAGAATTCCTTGTTTCACTTTCTGTTTCCCCAAACAAGTGCATCTTTTTGCTAGCATCTTCAGTAACAGCTGTTAAAATACAAGTATGGCCCTTAAAAAGATTTTTGGAGAAAGTTATAATTTAGTTTCTATGATTTAAAAGTTATTTATAATTTTATCAAATGATTGGTCAAGATCCAATTCTTTGTGGCCATTTATCTAGGAATTAATTTTCTACAAATTTTCTTGACATCCAAATGTTATAAAGTCGAGTGGGTTGTCTTGAGATTAATCGAGGTGCGTGTAAGCTACCTCGGACACTCGGACACTCATGGATATAAAAATAAAATAAAGTAAAATAACAATTTTGTCAAATGATTGAGATTATTTATGTAGATTTATAAAAATATAAGTACGGATGACTAAAATCCAGCTTTCTCCAAACTAAATGGACTGGATATTTATAAGGTAATCGAACATTTCTGATCACAAACTTGCTAGAAAGTTTTCTTAAACTAGTTGATTGATAAACATCACCAACTCGAATATCTTATTGATATTACCTTACGAATGGATGAGCTACGCTCTCAAAGATGATGATATTTTAACCTGAAACCTCTAATACATTTTTCGTTTCCGAATTCTTATGAGAAGCTTGTGTGTCTGATATGTTTTTCTTTGCTGCAGTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCATAAATTTTGTAGGGTTCTATATAACAAAATGTTTGGAAGTTTCACTTTTGCCTCTTGGTATGAAATTGATGAACAGCAGAGGGCAGCTTTTTCACACAATTTCTCTAAAATTTCTGTATTCATATCATTTAATGTATAATCTTGTTTATTTTTCTGTTTAAGCATCAAGTCTAACTTAATTAGACTTAAAAATGCTAATCTTTGATT

mRNA sequence

GCAGCACAAGTTTAGCTCAATCTCTTGTTCTTCTTCTTCTCGACTGGATAAACCTCTGGCCACGCCTCAGGGTTCTGTGCTTTCTTCACTCTTTTCTCTCGACTCGGGCTCTGCACACCAAAAATGGCTTCCATCTCATCCATACTAACCCCTACCAATCTCATTCACACCTCCAAAAAACCCACCGAAATTTCACAAGCTTTATCCTCTCAATTTCTCCGGCCAATCTCCTTTCACCCTCCTCATATCCTTCTCCGCATCTCTCCCGTCGCCGCCAGACCCCCCACGAGACTCTTCGCCGTTGCAGAAGCCGCGACGCAGGGTGCCAGTTCGGTGGCGGAAAGGAAATTGTACATTGGGAACATACCTAGAAATGTGAATAATGAGGAGCTTACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAAGTCATGTATGACAAATACTCTGGGAGAAGTCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGAAGTCGGAGGACGAAAAATTAAAGTTAACATAACAGAAAAACCTGTGGTTAATACAGTTGACCTGTCAATTCTTCAGGCAGAGGAATCTCAATTCATTGACAGTCCTTACAAAGTATATGTAGGAAACATTTCGAGTACAGTTTCTACCGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCATAAATTTTGTAGGGTTCTATATAACAAAATGTTTGGAAGTTTCACTTTTGCCTCTTGGTATGAAATTGATGAACAGCAGAGGGCAGCTTTTTCACACAATTTCTCTAAAATTTCTGTATTCATATCATTTAATGTATAATCTTGTTTATTTTTCTGTTTAAGCATCAAGTCTAACTTAATTAGACTTAAAAATGCTAATCTTTGATT

Coding sequence (CDS)

ATGGCTTCCATCTCATCCATACTAACCCCTACCAATCTCATTCACACCTCCAAAAAACCCACCGAAATTTCACAAGCTTTATCCTCTCAATTTCTCCGGCCAATCTCCTTTCACCCTCCTCATATCCTTCTCCGCATCTCTCCCGTCGCCGCCAGACCCCCCACGAGACTCTTCGCCGTTGCAGAAGCCGCGACGCAGGGTGCCAGTTCGGTGGCGGAAAGGAAATTGTACATTGGGAACATACCTAGAAATGTGAATAATGAGGAGCTTACTCGGATTGTCCAAGAACATGGGGCTGTGGAGAAGGCTGAAGTCATGTATGACAAATACTCTGGGAGAAGTCGCAGATTTGCCTTTGTTACTATGAAAACAGTTGAAGACGCAAATGCAGCAATTGAGAAACTGAATGAGACAGAAGTCGGAGGACGAAAAATTAAAGTTAACATAACAGAAAAACCTGTGGTTAATACAGTTGACCTGTCAATTCTTCAGGCAGAGGAATCTCAATTCATTGACAGTCCTTACAAAGTATATGTAGGAAACATTTCGAGTACAGTTTCTACCGAAACACTCAAAAACTTCTTCTCTGAGAAGGGTAAAGTTCTCAGTGCAAAGGTTTCACGGGTTCCAGGTACCTCGAAATCAAGTGGCTACGGTTTTGTTACCTTCTCTTCAGAGGAGGAAGTCGAAGCTGCCATTTCATCTTTTAACAATGCTTTGTTGGAAGGCCAACCAATCCGTGTAAACAAGGCATAA

Protein sequence

MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAVAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA

Homology

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BLAST of Cmc01g0032551 vs. NCBI nr
Match: XP_008461258.1 (PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo] >KAA0058655.1 30S ribosomal protein 2 [Cucumis melo var. makuwa] >TYK10462.1 30S ribosomal protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 471.1 bits (1211), Expect = 6.0e-129
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60
           MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 252
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

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BLAST of Cmc01g0032551 vs. NCBI nr
Match: XP_004135910.1 (30S ribosomal protein 2, chloroplastic [Cucumis sativus] >KAE8646408.1 hypothetical protein Csa_016819 [Cucumis sativus])

HSP 1 Score: 458.8 bits (1179), Expect = 3.1e-125
Identity = 242/251 (96.41%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60
           MASISSILTPTNLIH+SKKPT+I Q LSSQFLRPISFHPPHILLRISPVAA+PPTRLFAV
Sbjct: 1   MASISSILTPTNLIHSSKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAV 60

Query: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AE ATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEVATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVD+S LQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 252
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

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BLAST of Cmc01g0032551 vs. NCBI nr
Match: XP_038896967.1 (30S ribosomal protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 421.8 bits (1083), Expect = 4.2e-114
Identity = 227/251 (90.44%), Postives = 238/251 (94.82%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60
           MAS SSIL+PTNLIH+S KPTEI Q  S+QFLRPISFHPPHILL     AA+ PTRLFAV
Sbjct: 1   MASFSSILSPTNLIHSSTKPTEIPQNFSTQFLRPISFHPPHILL----AAAKRPTRLFAV 60

Query: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AEAA QGASSVAERKLYIGNIPRNV+NEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAA-QGASSVAERKLYIGNIPRNVDNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180
           TMKTV+DANAAIEKLNETEVGGR IKVNITEKP+VNT+D+S+LQAE+SQFIDSPYKVYVG
Sbjct: 121 TMKTVDDANAAIEKLNETEVGGRTIKVNITEKPLVNTIDMSLLQAEDSQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 252
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 246

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BLAST of Cmc01g0032551 vs. NCBI nr
Match: XP_022954329.1 (30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 406.8 bits (1044), Expect = 1.4e-109
Identity = 222/257 (86.38%), Postives = 234/257 (91.05%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60
           MASISSILTP NLIH+S KPTEI Q LS+QFLRPISFHP + LLR+SP     A +  TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVD+S+LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 252
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Cmc01g0032551 vs. NCBI nr
Match: XP_022954328.1 (30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 406.8 bits (1044), Expect = 1.4e-109
Identity = 222/257 (86.38%), Postives = 234/257 (91.05%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60
           MASISSILTP NLIH+S KPTEI Q LS+QFLRPISFHP + LLR+SP     A +  TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVD+S+LQA+ESQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 252
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

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BLAST of Cmc01g0032551 vs. ExPASy Swiss-Prot
Match: P82277 (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 3.2e-72
Identity = 157/261 (60.15%), Postives = 194/261 (74.33%), Query Frame = 0


Query: 1   MASISSILTPTNLI-HTSKKPTEISQALSSQFLRPI-SFHPPHILLRISPVAARPP-TRL 60
           MA+ISSIL    L+ H S   +      SSQ L  + SF     L   + V+  PP  ++
Sbjct: 1   MATISSILPCHGLLQHCSSSSSSSKPKFSSQNLVQLQSFSNGFGLKLKTRVSTNPPLLKV 60

Query: 61  FAVAEAATQGASSVAE-------RKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKY 120
            AV    T  +S+ +        R+LY+GNIPRN+NN+EL  IV+EHGA+E AEVMYDKY
Sbjct: 61  RAVVTEETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKY 120

Query: 121 SGRSRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQF 180
           SGRSRRF FVTMKTVEDANA IEKLN+TE+GGRKIKVNITEKP +  +D++  QAE+SQF
Sbjct: 121 SGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKP-LEGMDIATTQAEDSQF 180

Query: 181 IDSPYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVE 240
           ++SPYKVY+GN++ TV+ E LK+FFSEKGKVL AKV R PGTSKS+G+GFV+FSSEEEVE
Sbjct: 181 VESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 240

Query: 241 AAISSFNNALLEGQPIRVNKA 252
           AAI + NN++LEGQ IRVNKA
Sbjct: 241 AAIQALNNSVLEGQKIRVNKA 260

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BLAST of Cmc01g0032551 vs. ExPASy Swiss-Prot
Match: Q8VYM4 (30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 PE=2 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.8e-71
Identity = 138/198 (69.70%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 58  FAVAEAATQGA----SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGR 117
           +AV E   + A    SS A R++YIGNIPR V NE+LT++V+EHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 118 SRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDS 177
           SRRF F TMK+VEDANA +EKLN   V GR+IKVNITEKP+ ++ DLS+LQ+E+S F+DS
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175

Query: 178 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 237
           PYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235

Query: 238 SSFNNALLEGQPIRVNKA 252
            + NN+LLEGQ IRVNKA
Sbjct: 236 VALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Cmc01g0032551 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-31
Identity = 72/194 (37.11%), Postives = 120/194 (61.86%), Query Frame = 0


Query: 60  VAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAF 119
           V E      +S  E +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F F
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161

Query: 120 VTMKTVEDANAAIEKLNETEVGGRKIKVNITEKP--VVNTVDLSILQAEESQFIDSPYKV 179
           VTM ++E+A  A++  N +++GGR +KVN  E P    N V  + ++     ++DSP+KV
Sbjct: 162 VTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221

Query: 180 YVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFN 239
           Y GN+   ++++ LK+ F ++  VL AKV     T +S G+GF++F S E V++A+++ N
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281

Query: 240 NALLEGQPIRVNKA 252
              +EG+ +R+N A
Sbjct: 282 GVEVEGRALRLNLA 295

[Close]

BLAST of Cmc01g0032551 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-30
Identity = 72/186 (38.71%), Postives = 120/186 (64.52%), Query Frame = 0


Query: 68  ASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVED 127
           + SV   +LY+GN+P ++ + +L+ I  E G V   E++YD+ + RSR FAFVTM +VE+
Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167

Query: 128 ANAAIEKLNETEVGGRKIKVNITEKP--VVNTVDLSILQAEESQFIDSPYKVYVGNISST 187
           A  AI   + ++VGGR +KVN  E P      V  + +++    F+DSP+K+YV N+S  
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWA 227

Query: 188 VSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQP 247
           ++++ L++ F+++   +SAKV     + +S G+GF+TFSS E + +A+ + N   LEG+P
Sbjct: 228 LTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRP 287

Query: 248 IRVNKA 252
           +R+N A
Sbjct: 288 LRLNVA 293

[Close]

BLAST of Cmc01g0032551 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 77/179 (43.02%), Postives = 109/179 (60.89%), Query Frame = 0


Query: 73  ERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAI 132
           E KL++GN+P +V++E+L  I    G VE AEV+Y++ + RSR F FVTM TVE+A  A+
Sbjct: 54  EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAV 113

Query: 133 EKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVGNISSTVSTETLK 192
           E LN  ++ GR++ VN            S  +A    F +   +VYVGN+   V T  L+
Sbjct: 114 ELLNGYDMDGRQLTVNKAAPRG------SPERAPRGDF-EPSCRVYVGNLPWDVDTSRLE 173

Query: 193 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 252
             FSE GKV+SA+V     T +S G+GFVT SSE EV  AI++ +   L+G+ +RVN A
Sbjct: 174 QLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225

[Close]

BLAST of Cmc01g0032551 vs. ExPASy TrEMBL
Match: A0A5A7UYL6 (30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001110 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.9e-129
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60
           MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 252
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

[Close]

BLAST of Cmc01g0032551 vs. ExPASy TrEMBL
Match: A0A1S3CEQ4 (30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.9e-129
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60
           MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV
Sbjct: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAV 60

Query: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120
           AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV
Sbjct: 61  AEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFV 120

Query: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180
           TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG
Sbjct: 121 TMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVG 180

Query: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240
           NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL
Sbjct: 181 NISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNAL 240

Query: 241 LEGQPIRVNKA 252
           LEGQPIRVNKA
Sbjct: 241 LEGQPIRVNKA 251

[Close]

BLAST of Cmc01g0032551 vs. ExPASy TrEMBL
Match: A0A0A0K8E7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428960 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.5e-117
Identity = 227/235 (96.60%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 17  SKKPTEISQALSSQFLRPISFHPPHILLRISPVAARPPTRLFAVAEAATQGASSVAERKL 76
           SKKPT+I Q LSSQFLRPISFHPPHILLRISPVAA+PPTRLFAVAE ATQGASSVAERKL
Sbjct: 31  SKKPTDIPQTLSSQFLRPISFHPPHILLRISPVAAKPPTRLFAVAEVATQGASSVAERKL 90

Query: 77  YIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLN 136
           YIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLN
Sbjct: 91  YIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLN 150

Query: 137 ETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVGNISSTVSTETLKNFFS 196
           ETEVGGRKIKVNITEKPVVNTVD+S LQAEESQFIDSPYKVYVGNISSTVSTETLKNFFS
Sbjct: 151 ETEVGGRKIKVNITEKPVVNTVDMSFLQAEESQFIDSPYKVYVGNISSTVSTETLKNFFS 210

Query: 197 EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 252
           EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEV+AAISSFNNALLEGQPIRVNKA
Sbjct: 211 EKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQPIRVNKA 265

[Close]

BLAST of Cmc01g0032551 vs. ExPASy TrEMBL
Match: A0A6J1GSN8 (30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.8e-110
Identity = 222/257 (86.38%), Postives = 234/257 (91.05%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60
           MASISSILTP NLIH+S KPTEI Q LS+QFLRPISFHP + LLR+SP     A +  TR
Sbjct: 1   MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 60

Query: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 61  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 120

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVD+S+LQA+ESQFIDSP
Sbjct: 121 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 180

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240

Query: 241 SFNNALLEGQPIRVNKA 252
           SFNNALLEGQPIRVNKA
Sbjct: 241 SFNNALLEGQPIRVNKA 257

[Close]

BLAST of Cmc01g0032551 vs. ExPASy TrEMBL
Match: A0A6J1GQT6 (30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456607 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.8e-110
Identity = 222/257 (86.38%), Postives = 234/257 (91.05%), Query Frame = 0


Query: 1   MASISSILTPTNLIHTSKKPTEISQALSSQFLRPISFHPPHILLRISP----VAARPPTR 60
           MASISSILTP NLIH+S KPTEI Q LS+QFLRPISFHP + LLR+SP     A +  TR
Sbjct: 23  MASISSILTPANLIHSSIKPTEIPQTLSTQFLRPISFHPRYTLLRVSPGLQTSAGKRRTR 82

Query: 61  LFAVAEAA--TQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRS 120
           LFAVAEAA   Q  SSVA RKLYIGNIPRNV NEELTRIV+EHGAVEKAEVMYDKYSGRS
Sbjct: 83  LFAVAEAAVSVQDPSSVAARKLYIGNIPRNVGNEELTRIVEEHGAVEKAEVMYDKYSGRS 142

Query: 121 RRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSP 180
           RRFAFVTMKTV+DANA IEKLN+TEVGGR IKVNITEKP+VNTVD+S+LQA+ESQFIDSP
Sbjct: 143 RRFAFVTMKTVDDANAVIEKLNDTEVGGRTIKVNITEKPLVNTVDMSLLQADESQFIDSP 202

Query: 181 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 240
           YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS
Sbjct: 203 YKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAIS 262

Query: 241 SFNNALLEGQPIRVNKA 252
           SFNNALLEGQPIRVNKA
Sbjct: 263 SFNNALLEGQPIRVNKA 279

[Close]

BLAST of Cmc01g0032551 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 268.5 bits (685), Expect = 5.5e-72
Identity = 138/198 (69.70%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 58  FAVAEAATQGA----SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGR 117
           +AV E   + A    SS A R++YIGNIPR V NE+LT++V+EHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 118 SRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDS 177
           SRRF F TMK+VEDANA +EKLN   V GR+IKVNITEKP+ ++ DLS+LQ+E+S F+DS
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175

Query: 178 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 237
           PYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235

Query: 238 SSFNNALLEGQPIRVNKA 252
            + NN+LLEGQ IRVNKA
Sbjct: 236 VALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Cmc01g0032551 vs. TAIR 10
Match: AT3G52150.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 268.5 bits (685), Expect = 5.5e-72
Identity = 138/198 (69.70%), Postives = 167/198 (84.34%), Query Frame = 0


Query: 58  FAVAEAATQGA----SSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGR 117
           +AV E   + A    SS A R++YIGNIPR V NE+LT++V+EHGAVEK +VMYDKYSGR
Sbjct: 56  YAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGR 115

Query: 118 SRRFAFVTMKTVEDANAAIEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDS 177
           SRRF F TMK+VEDANA +EKLN   V GR+IKVNITEKP+ ++ DLS+LQ+E+S F+DS
Sbjct: 116 SRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDS 175

Query: 178 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAI 237
           PYKVYVGN++ TV+ E L+N FSEKGKV+SAKVSRVPGTSKS+G+GFVTFSSEE+VEAAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235

Query: 238 SSFNNALLEGQPIRVNKA 252
            + NN+LLEGQ IRVNKA
Sbjct: 236 VALNNSLLEGQKIRVNKA 253

[Close]

BLAST of Cmc01g0032551 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-32
Identity = 72/194 (37.11%), Postives = 120/194 (61.86%), Query Frame = 0


Query: 60  VAEAATQGASSVAERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAF 119
           V E      +S  E +LY+GN+P  + + EL++I  E G V   +++YDK + RSR F F
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161

Query: 120 VTMKTVEDANAAIEKLNETEVGGRKIKVNITEKP--VVNTVDLSILQAEESQFIDSPYKV 179
           VTM ++E+A  A++  N +++GGR +KVN  E P    N V  + ++     ++DSP+KV
Sbjct: 162 VTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKV 221

Query: 180 YVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFN 239
           Y GN+   ++++ LK+ F ++  VL AKV     T +S G+GF++F S E V++A+++ N
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281

Query: 240 NALLEGQPIRVNKA 252
              +EG+ +R+N A
Sbjct: 282 GVEVEGRALRLNLA 295

[Close]

BLAST of Cmc01g0032551 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-32
Identity = 93/240 (38.75%), Postives = 136/240 (56.67%), Query Frame = 0


Query: 28  SSQFLRPISFHPPHILLRISPVAARPPTRLFAV----------AEAATQGASSVAE---- 87
           S+Q L   +F  P  LL    +++R  +R F V           E    GAS+V +    
Sbjct: 27  SNQTLLRFNFSTPKPLL----ISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAA 86

Query: 88  --RKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAA 147
              KLY GN+P NV++  L +I+Q+    E  EV+Y++ +G+SR FAFVTM  VED N  
Sbjct: 87  VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 146

Query: 148 IEKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVGNISSTVSTETL 207
           I+ L+ TE  GR +KVN  +KP  N         +E  + ++ +K++VGN+S TV++E+L
Sbjct: 147 IDNLDGTEYLGRALKVNFADKPKPN---------KEPLYPETEHKLFVGNLSWTVTSESL 206

Query: 208 KNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 252
              F E G V+ A+V     T +S GYGFV +SS+ E+E A+ S +   LEG+ IRVN A
Sbjct: 207 AGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253

[Close]

BLAST of Cmc01g0032551 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 124.8 bits (312), Expect = 9.9e-29
Identity = 69/179 (38.55%), Postives = 108/179 (60.34%), Query Frame = 0


Query: 73  ERKLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAI 132
           E KL++GN+P +V+++ L  + ++ G VE +EV+Y++ + +SR F FVTM TVE+A  A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171

Query: 133 EKLNETEVGGRKIKVNITEKPVVNTVDLSILQAEESQFIDSPYKVYVGNISSTVSTETLK 192
           EK N  EV GR++ VN                  + +  D+ +++YVGN+   V +  L+
Sbjct: 172 EKFNSFEVNGRRLTVN-------RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 231

Query: 193 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVEAAISSFNNALLEGQPIRVNKA 252
             FSE GKV+ A+V     T +S G+GFV  S+E EV  AI++ +   LEG+ I+VN A
Sbjct: 232 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283

The following BLAST results are available for this feature:

BLAST of Cmc01g0032551 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461258.1	6.0e-129	100.00	PREDICTED: 30S ribosomal protein 2, chloroplastic [Cucumis melo] >KAA0058655.1 3...	[more]
XP_004135910.1	3.1e-125	96.41	30S ribosomal protein 2, chloroplastic [Cucumis sativus] >KAE8646408.1 hypotheti...	[more]
XP_038896967.1	4.2e-114	90.44	30S ribosomal protein 2, chloroplastic [Benincasa hispida]	[more]
XP_022954329.1	1.4e-109	86.38	30S ribosomal protein 2, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022954328.1	1.4e-109	86.38	30S ribosomal protein 2, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cmc01g0032551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82277	3.2e-72	60.15	30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP2 PE=...	[more]
Q8VYM4	7.8e-71	69.70	30S ribosomal protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP2 ...	[more]
Q39061	2.7e-31	37.11	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	1.8e-30	38.71	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.1e-27	43.02	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of Cmc01g0032551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYL6	2.9e-129	100.00	30S ribosomal protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEQ4	2.9e-129	100.00	30S ribosomal protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499898 P...	[more]
A0A0A0K8E7	1.5e-117	96.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428960 PE=4 SV=1	[more]
A0A6J1GSN8	6.8e-110	86.38	30S ribosomal protein 2, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=...	[more]
A0A6J1GQT6	6.8e-110	86.38	30S ribosomal protein 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=...	[more]

BLAST of Cmc01g0032551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52150.1	5.5e-72	69.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52150.2	5.5e-72	69.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	1.9e-32	37.11	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	4.3e-32	38.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	9.9e-29	38.55	chloroplast RNA-binding protein 31B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 75..148 e-value: 2.2 score: 10.7 coord: 176..249 e-value: 0.18 score: 20.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 176..249 e-value: 2.5E-23 score: 93.5 coord: 75..148 e-value: 1.7E-26 score: 104.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 76..146 e-value: 1.2E-19 score: 69.9 coord: 177..247 e-value: 1.8E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 175..251 score: 18.32506
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 74..152 score: 18.666168
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 51..156 e-value: 8.2E-27 score: 96.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 162..251 e-value: 3.4E-24 score: 87.3
None	No IPR available	PANTHER	PTHR48025:SF4	30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC	coord: 1..251
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..251
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 75..152 e-value: 6.55301E-35 score: 118.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 170..251
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 61..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0032551.1	Cmc01g0032551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding