Cmc01g0031081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0031081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	E3 ubiquitin-protein ligase MIEL1-like
Location	CMiso1.1chr01: 31948571 .. 31949061 (+)
RNA-Seq Expression	Cmc01g0031081
Synteny	Cmc01g0031081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAACTCAATTTTCCAAATGGCTGCCATTAGACCTCTAGTTTCCATAGCTCTCTTGGCTCTTCTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTAACCGGAATTCCTCACCGGAACATCTTGCACACCGTGGCGCATCGGATTGTCAATGGCAGTGTTGAGTCCTCCTACCAAAGGAAGTCGAATAAGCTTCATACAAAAGATAGAAGGCGGATTCGACCGATACTAATCAGCGGCAGCAACGGCATGCATCACAAATCGGCAGAGAATCGGAGCCGAGTAACGTCCTTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGAATTATGTAAACTTTGGACTCTTTGTTTTCCTTTTTTGTGGTGTGTGTATTTTAGCTCTAAGATAATGATTTAAAGGGAAAAAAAACCAATGACTCCAGACTTTTGATTTTTCATCAAACTAAAAAATGTACTTGGAAGAATGA

mRNA sequence

GGAAACTCAATTTTCCAAATGGCTGCCATTAGACCTCTAGTTTCCATAGCTCTCTTGGCTCTTCTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTAACCGGAATTCCTCACCGGAACATCTTGCACACCGTGGCGCATCGGATTGTCAATGGCAGTGTTGAGTCCTCCTACCAAAGGAAGTCGAATAAGCTTCATACAAAAGATAGAAGGCGGATTCGACCGATACTAATCAGCGGCAGCAACGGCATGCATCACAAATCGGCAGAGAATCGGAGCCGAGTAACGTCCTTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGAATTATGTAAACTTTGGACTCTTTGTTTTCCTTTTTTGTGGTGTGTGTATTTTAGCTCTAAGATAATGATTTAAAGGGAAAAAAAACCAATGACTCCAGACTTTTGATTTTTCATCAAACTAAAAAATGTACTTGGAAGAATGA

Coding sequence (CDS)

ATGGCTGCCATTAGACCTCTAGTTTCCATAGCTCTCTTGGCTCTTCTCTTCTTCTCCGAATCCCTACTCACTTCCCATTCTCTAACCGGAATTCCTCACCGGAACATCTTGCACACCGTGGCGCATCGGATTGTCAATGGCAGTGTTGAGTCCTCCTACCAAAGGAAGTCGAATAAGCTTCATACAAAAGATAGAAGGCGGATTCGACCGATACTAATCAGCGGCAGCAACGGCATGCATCACAAATCGGCAGAGAATCGGAGCCGAGTAACGTCCTTTGAGGTTGGATCTATGTTGTGTATCTGCATTTTCTTGGGATTGTTCTTGTGA

Protein sequence

MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVTSFEVGSMLCICIFLGLFL

Homology

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BLAST of Cmc01g0031081 vs. NCBI nr
Match: KAA0046715.1 (E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 9.2e-50
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60
           MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60

Query: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVTSFEVGSMLCICIFLGLFL 110
           HTKDRRRIRPILISGSNGMHHKSAENRSRV SFEVGSMLCICIFLGLFL
Sbjct: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

[Close]

BLAST of Cmc01g0031081 vs. NCBI nr
Match: XP_008451651.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-41
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60
           MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60

Query: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVTSFE---------VGSMLCI 102
           HTKDRRRIRPILISGSNGMHHKSAENRSRV SFE         +G ++C+
Sbjct: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVASFEDRHELVRRDIGQVVCL 110

[Close]

BLAST of Cmc01g0031081 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 7.6e-12
Identity = 59/117 (50.43%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60
           MAA++ LVS+ALLALL FSESL          S+SLTG+  RN+L T AH+I + SVESS
Sbjct: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVTSFEVGSMLCICIFLGLFL 110
            +RK N +H K  RR+RP+           SA NRSR+ S  VGS+L   + LGLFL
Sbjct: 61  PERKMN-VHIK--RRMRPVATG-----TRSSAANRSRIASIGVGSVL---VVLGLFL 106

[Close]

BLAST of Cmc01g0031081 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 7.9e-09
Identity = 59/146 (40.41%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60
           MAAI+  + I+LLALLFF E L           S+S+TG+ HR IL T AH+    +VES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SYQRKSNKLHTK----------------------------DRRRIRPILISGSNGMHHKS 110
           S +RK N +H K                            DR   R  L  G  G HHKS
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTG-HHKS 120

[Close]

BLAST of Cmc01g0031081 vs. NCBI nr
Match: KAG6593163.1 (hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 56/119 (47.06%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVA--HRIVNGSVE 60
           MAAI+ L+SIAL+ALL F ESL T        S SL GI  RNI+ T A  H++      
Sbjct: 1   MAAIKALLSIALIALLLFFESLPTSAAVHRGASTSLAGILRRNIVQTTADHHQVA----- 60

Query: 61  SSYQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVTSFEVGSMLCICIFLGLFL 110
                K   +H K R R+RP+LI    G    SA NRSR     VGSMLCI + LGLFL
Sbjct: 61  ----EKKFNVHIKRRMRMRPVLI----GRPKTSAANRSREAFCGVGSMLCIFVLLGLFL 106

[Close]

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.5e-50
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60
           MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60

Query: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVTSFEVGSMLCICIFLGLFL 110
           HTKDRRRIRPILISGSNGMHHKSAENRSRV SFEVGSMLCICIFLGLFL
Sbjct: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICIFLGLFL 109

[Close]

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL
Match: A0A1S3BT53 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 95/110 (86.36%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60
           MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVESSYQRKSNKL 60

Query: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVTSFE---------VGSMLCI 102
           HTKDRRRIRPILISGSNGMHHKSAENRSRV SFE         +G ++C+
Sbjct: 61  HTKDRRRIRPILISGSNGMHHKSAENRSRVASFEDRHELVRRDIGQVVCL 110

[Close]

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL
Match: A0A0A0K929 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 91/114 (79.82%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLTSHSLTGIPHRNILHTVAHRIVNGSVE-SSYQ-RKSN 60
           MAAIRPL+SIA LAL FFSESLLTSHSLTGIPHR IL+T AHRIV+GSVE SSYQ RKSN
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTSHSLTGIPHRTILNTAAHRIVDGSVEYSSYQIRKSN 60

Query: 61  KLHTKD--RRRIRPILISGSNGMHHKSAENR-SRVTSFEVGSMLCICIFLGLFL 110
           KLH KD  +RR  PIL+S SNG HHKSA NR S V S EVGSMLCICIFLGLFL
Sbjct: 61  KLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGLFL 114

[Close]

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL
Match: A0A1S3BRF6 (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 59/146 (40.41%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60
           MAAI+  + I+LLALLFF E L           S+S+TG+ HR IL T AH+    +VES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SYQRKSNKLHTK----------------------------DRRRIRPILISGSNGMHHKS 110
           S +RK N +H K                            DR   R  L  G  G HHKS
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTG-HHKS 120

[Close]

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL
Match: A0A0A0KAQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 51/117 (43.59%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60
           MAAI+ L+SI+LLALLFFSESL T        S+S+T +  RNIL T  H I +   + +
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADSEGKMN 60

Query: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVTSFEVGSMLCICIFLGLFL 110
            + K   L      R RPI      G    SA NRSRV SF +G +L    F GL L
Sbjct: 61  VRIKKGGL-----GRFRPIGAGTGTGT-RSSAANRSRVDSFGLGFLL---FFFGLVL 108

The following BLAST results are available for this feature:

BLAST of Cmc01g0031081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046715.1	9.2e-50	99.08	E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa] >TYK18251.1 E3...	[more]
XP_008451651.1	2.7e-41	86.36	PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo]	[more]
KAG6575859.1	7.6e-12	50.43	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008451666.1	7.9e-09	40.41	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]
KAG6593163.1	1.8e-08	47.06	hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cmc01g0031081 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3Y6	4.5e-50	99.08	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BT53	1.3e-41	86.36	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P...	[more]
A0A0A0K929	3.4e-34	79.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394020 PE=4 SV=1	[more]
A0A1S3BRF6	3.8e-09	40.41	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]
A0A0A0KAQ7	3.0e-06	43.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]

BLAST of Cmc01g0031081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0031081.1	Cmc01g0031081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0008270	zinc ion binding