Cmc01g0030381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0030381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pectin lyase-like superfamily protein
Location	CMiso1.1chr01: 31490038 .. 31491303 (-)
RNA-Seq Expression	Cmc01g0030381
Synteny	Cmc01g0030381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCAATAAAGTTCAACAAGGTAACCCATGGGTCGATGGAGGGTTTTACTTCAGTGAACAGCAAAGCGTTCCACATATTCGTGGTCTTAAGCCACAATATAAAAATCAACAATATACACATAGTTGCTCCTGGTAATAGCCCAAACACTGATGGTGTTCATATAAGCCAGACTGATGTAGTTAACGTTACAAATAGCATCATTGGAACCGGAGATGATTGTGTTTCAATTGGCCATGGATCCACCAATATCAATGTTCTCAACATCACTTGTGGCCCTGGACATGGCATCAGGTATATACCAATGTTGTTAAGAGAATCCCCGATTAGAAAGCTCAGAGAAAGCTAGTCACTTCTATAAATTGCATAGAGTTGACTCTTCCATTATGGATTAATTTTAAGATGAAGTCTGATGTTTAACTAATACATATTCAAACAATCTAATTGAATTCATTAGAAATATGAGTTTTAAGAGTTGAGATCAGACCATTTGGATTGACTTTAAAGCATTTGGTCCAAATCCGTCCTAAAATTTAGTTTACAAGCTTTGTGATTTGTAGGCTTGAGGTTTTATTGAAAACAGTTTTGTAACCAAAACAATTGATAACAAAAGTAGCAATTCATTTTATCTCATAAAACATCAATTGCGAAATCTCATTTTTTTGTTTTATAACAGAGTTAAATGGATAGACCAAATTTATGTATTGAAATTTTGCAGTGTGGGAAGCCTTGGGAAATATAAAGATGAGAAGGAAGTACGTGGAATTTTTGTGTCAAATTGCACAATAAGAAACACCACAAATGGAGTAAGGATCAAGACATGGGCTGCTTCACCTCCTGGCCAAGCTACTAGAATCACCTTCCAAGACATTGTCTTAGATAAGGTCCGAAACCCTATCATCATCGATCAAACTTACGGCTCAAAAAAGAAGAGAAGTGTAAGTAACTAATTAGACTCCGTGTTCGATAACAATTACAAAACATGCTTAATTACGTAATCAACATTTAACATTGTGTCATGATTGTCATGCAGCCATCTCAGGTGAAGATCAGCGACGTCCAGTTCAAGAACATTCGAGGCACCACGATATCTCCCGTTGCCGTTTCGTTGCAGTGCAGCGCTGCCTTGCCGTGCGACAGCATTAAATTGGAACAGATTGATGTGGCCTTTTCTGGCTCTCGTTCAAAGCAACCATTTGGAAATTCATGTTTGAATGCCAAGATTACAACCATAGGAAAACAGAACCCACCGGCTTGTGTTTAG

mRNA sequence

ATGCAGTCAATAAAGTTCAACAAGGTAACCCATGGGTCGATGGAGGGTTTTACTTCAGTGAACAGCAAAGCGTTCCACATATTCGTGGTCTTAAGCCACAATATAAAAATCAACAATATACACATAGTTGCTCCTGGTAATAGCCCAAACACTGATGGTGTTCATATAAGCCAGACTGATGTAGTTAACGTTACAAATAGCATCATTGGAACCGGAGATGATTGTGTTTCAATTGGCCATGGATCCACCAATATCAATGTTCTCAACATCACTTGTGGCCCTGGACATGGCATCAGGTATATACCAATGTTGTTAAGAGAATCCCCGATTAGAAAGCTCAGAGAAAGCTATGTGGGAAGCCTTGGGAAATATAAAGATGAGAAGGAAGTACGTGGAATTTTTGTGTCAAATTGCACAATAAGAAACACCACAAATGGAGTAAGGATCAAGACATGGGCTGCTTCACCTCCTGGCCAAGCTACTAGAATCACCTTCCAAGACATTGTCTTAGATAAGGTCCGAAACCCTATCATCATCGATCAAACTTACGGCTCAAAAAAGAAGAGAAGTCCATCTCAGGTGAAGATCAGCGACGTCCAGTTCAAGAACATTCGAGGCACCACGATATCTCCCGTTGCCGTTTCGTTGCAGTGCAGCGCTGCCTTGCCGTGCGACAGCATTAAATTGGAACAGATTGATGTGGCCTTTTCTGGCTCTCGTTCAAAGCAACCATTTGGAAATTCATGTTTGAATGCCAAGATTACAACCATAGGAAAACAGAACCCACCGGCTTGTGTTTAG

Coding sequence (CDS)

ATGCAGTCAATAAAGTTCAACAAGGTAACCCATGGGTCGATGGAGGGTTTTACTTCAGTGAACAGCAAAGCGTTCCACATATTCGTGGTCTTAAGCCACAATATAAAAATCAACAATATACACATAGTTGCTCCTGGTAATAGCCCAAACACTGATGGTGTTCATATAAGCCAGACTGATGTAGTTAACGTTACAAATAGCATCATTGGAACCGGAGATGATTGTGTTTCAATTGGCCATGGATCCACCAATATCAATGTTCTCAACATCACTTGTGGCCCTGGACATGGCATCAGGTATATACCAATGTTGTTAAGAGAATCCCCGATTAGAAAGCTCAGAGAAAGCTATGTGGGAAGCCTTGGGAAATATAAAGATGAGAAGGAAGTACGTGGAATTTTTGTGTCAAATTGCACAATAAGAAACACCACAAATGGAGTAAGGATCAAGACATGGGCTGCTTCACCTCCTGGCCAAGCTACTAGAATCACCTTCCAAGACATTGTCTTAGATAAGGTCCGAAACCCTATCATCATCGATCAAACTTACGGCTCAAAAAAGAAGAGAAGTCCATCTCAGGTGAAGATCAGCGACGTCCAGTTCAAGAACATTCGAGGCACCACGATATCTCCCGTTGCCGTTTCGTTGCAGTGCAGCGCTGCCTTGCCGTGCGACAGCATTAAATTGGAACAGATTGATGTGGCCTTTTCTGGCTCTCGTTCAAAGCAACCATTTGGAAATTCATGTTTGAATGCCAAGATTACAACCATAGGAAAACAGAACCCACCGGCTTGTGTTTAG

Protein sequence

MQSIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVVNVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLGKYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQTYGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSKQPFGNSCLNAKITTIGKQNPPACV

Homology

[Close]

BLAST of Cmc01g0030381 vs. NCBI nr
Match: KAA0046656.1 (exopolygalacturonase clone [Cucumis melo var. makuwa])

HSP 1 Score: 479.2 bits (1232), Expect = 2.3e-131
Identity = 245/264 (92.80%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV
Sbjct: 184 SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 243

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 244 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 303

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT
Sbjct: 304 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 363

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK
Sbjct: 364 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 423

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPFGNSCLNAKITTIGKQNPPACV
Sbjct: 424 QPFGNSCLNAKITTIGKQNPPACV 429

[Close]

BLAST of Cmc01g0030381 vs. NCBI nr
Match: XP_008451547.1 (PREDICTED: exopolygalacturonase clone GBGE184 [Cucumis melo] >TYK18191.1 exopolygalacturonase [Cucumis melo var. makuwa])

HSP 1 Score: 479.2 bits (1232), Expect = 2.3e-131
Identity = 245/264 (92.80%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV
Sbjct: 184 SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 243

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 244 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 303

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT
Sbjct: 304 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 363

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK
Sbjct: 364 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 423

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPFGNSCLNAKITTIGKQNPPACV
Sbjct: 424 QPFGNSCLNAKITTIGKQNPPACV 429

[Close]

BLAST of Cmc01g0030381 vs. NCBI nr
Match: XP_011659369.1 (exopolygalacturonase clone GBGE184 [Cucumis sativus] >KGN44972.1 hypothetical protein Csa_015742 [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 1.8e-123
Identity = 230/264 (87.12%), Postives = 236/264 (89.39%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVT G MEG TSVNSKAFHIFVVLSHNIKINN+HIVAPGNSPNTDGVHISQTDVV
Sbjct: 188 SIKFNKVTQGLMEGITSVNSKAFHIFVVLSHNIKINNVHIVAPGNSPNTDGVHISQTDVV 247

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 248 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 307

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KY+DEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQ+IVLDKVRNPIIIDQ 
Sbjct: 308 KYRDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQNIVLDKVRNPIIIDQN 367

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSK K+SPSQVK+SDVQFKNIRGTTISPVAVSLQCSAALPCD IKLEQIDVAFSG+  K
Sbjct: 368 YGSKTKKSPSQVKVSDVQFKNIRGTTISPVAVSLQCSAALPCDGIKLEQIDVAFSGTHLK 427

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPF NSCLNAKITTIGKQNPPACV
Sbjct: 428 QPFANSCLNAKITTIGKQNPPACV 433

[Close]

BLAST of Cmc01g0030381 vs. NCBI nr
Match: XP_038899827.1 (exopolygalacturonase clone GBGE184 [Benincasa hispida])

HSP 1 Score: 421.4 bits (1082), Expect = 5.8e-114
Identity = 211/265 (79.62%), Postives = 229/265 (86.42%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVT+G MEG +S+NSKAFHIFVVLSHNIK+NN+HI APGNSPNTDG+HISQTDVV
Sbjct: 186 SIKFNKVTNGLMEGISSLNSKAFHIFVVLSHNIKVNNLHITAPGNSPNTDGIHISQTDVV 245

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           N+TNSIIGTGDDCVSIGHGSTNI V N+TCGPGHGI                   VGSLG
Sbjct: 246 NITNSIIGTGDDCVSIGHGSTNITVSNVTCGPGHGIS------------------VGSLG 305

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KY DEKEVRGIFVSNCTIRNTTNG+RIKTWAASP GQATRITFQDI+LD VRNPIIIDQT
Sbjct: 306 KYDDEKEVRGIFVSNCTIRNTTNGLRIKTWAASPAGQATRITFQDIILDSVRNPIIIDQT 365

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSKKK++PSQVKISDV FKNIRGTT+S V VSLQCSAA+PCD IKLE+ID+AF+G+R K
Sbjct: 366 YGSKKKKAPSQVKISDVVFKNIRGTTVSDVGVSLQCSAAVPCDGIKLEEIDLAFTGTRLK 425

Query: 243 QP-FGNSCLNAKITTIGKQNPPACV 267
            P F NSCLNAKIT IGKQNPPACV
Sbjct: 426 HPTFANSCLNAKITAIGKQNPPACV 432

[Close]

BLAST of Cmc01g0030381 vs. NCBI nr
Match: KAG7014349.1 (Exopolygalacturonase-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 7.1e-96
Identity = 182/264 (68.94%), Postives = 208/264 (78.79%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           S+KFNKVT+G MEG +S+NSK FHIF+VLSH++++NN++I+AP  SPNTDG+HISQTD V
Sbjct: 106 SLKFNKVTNGLMEGISSLNSKGFHIFLVLSHHLRVNNLNIIAPDQSPNTDGIHISQTDNV 165

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
            +T+SIIGTGDDCVSIGHGS N+ V NI CGPGHGI                   VGSLG
Sbjct: 166 TITSSIIGTGDDCVSIGHGSVNVTVSNIKCGPGHGIS------------------VGSLG 225

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEK+V GIFVSNCT++NTT GVRIKTWA SPP QAT I FQDIVLD V+NPIIIDQ 
Sbjct: 226 KYKDEKDVSGIFVSNCTLKNTTFGVRIKTWADSPPSQATGIHFQDIVLDSVKNPIIIDQF 285

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS-RS 242
           YGSKK + PS+VKISDV +KNIRGTTIS V VSLQCS+A+PCD I LE ID+AF GS R 
Sbjct: 286 YGSKKNKKPSKVKISDVSYKNIRGTTISVVPVSLQCSSAIPCDGITLEDIDLAFIGSDRK 345

Query: 243 KQPFGNSCLNAKITTIGKQNPPAC 266
           K   GNSCLNAK    GKQNPPAC
Sbjct: 346 KALIGNSCLNAKFKATGKQNPPAC 351

[Close]

BLAST of Cmc01g0030381 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.9e-60
Identity = 121/270 (44.81%), Postives = 167/270 (61.85%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           S+KF  + +  + G +SVN+KAFH+F+V + N+ I NI + AP  SPNTDG+H+S  D V
Sbjct: 171 SLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNV 230

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           ++ +S I TGDDCVS+G GS N+ V  + CGPGHG+                   VGSLG
Sbjct: 231 SILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLS------------------VGSLG 290

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYK+E++V GI V+NCT+  T NG+RIKTW  S P +A  I F++I++  V+NPIIIDQ 
Sbjct: 291 KYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQN 350

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSG---- 242
           YGS  +   SQV ISD+ FKNIRGTTI+   V + CS ++PC  + +  +++ + G    
Sbjct: 351 YGS--RGGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDYVGKTGG 410

Query: 243 ---SRSKQPFGNSCLNAKITTIGKQNPPAC 266
              S S    G  C NA +   GK + P C
Sbjct: 411 EKKSSSGGLVGALCDNANVIFGGKLSFPMC 420

[Close]

BLAST of Cmc01g0030381 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.3e-59
Identity = 113/263 (42.97%), Postives = 167/263 (63.50%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           +++F+ + H  +   TS+NSK FHI V+   +I   ++ + APG S NTDG+H+  +  V
Sbjct: 130 NLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGV 189

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
            +TN+ I TGDDC+SIG GS N+ +  + CGPGHGI                   +GSLG
Sbjct: 190 TITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGIS------------------IGSLG 249

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQ- 182
           +Y +EKEVRGI V  CT   T NGVR+KTW  SPPG AT +TFQD+ ++ V+NP+I+DQ 
Sbjct: 250 RYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQE 309

Query: 183 --TYGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS 242
              YG   +++PS++K+S++ F NIRGT+   VAV + CS  +PC ++K+ +I++++ G+
Sbjct: 310 YCPYGQCSRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGA 369

Query: 243 RSKQPFGNSCLNAKITTIGKQNP 263
               P  ++C N K T  GKQ P
Sbjct: 370 GG--PATSTCSNVKPTFSGKQVP 372

[Close]

BLAST of Cmc01g0030381 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.1e-58
Identity = 117/266 (43.98%), Postives = 163/266 (61.28%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           ++ FN +T+ +++  T+++SK+FH+ V    N+     ++ AP NSPNTDG+H+S++  V
Sbjct: 143 NLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSV 202

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           N+T+S   TGDDC+S+G  +  + +  +TCGPGHGI                   VGSLG
Sbjct: 203 NITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGIS------------------VGSLG 262

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
              DEK V G+FV NCT  NT NGVRIKTW AS PG    + F+DI++  V NP++IDQ 
Sbjct: 263 GNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQV 322

Query: 183 Y---GSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS 242
           Y       K  PSQVKIS V F+NI+GT+ +  AVSL  S  +PC+ I++  ID+ +SG 
Sbjct: 323 YCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGK 382

Query: 243 RSKQPFGNSCLNAKITTIGKQNPPAC 266
               P  +SC N K +  GKQNPP C
Sbjct: 383 EG--PAKSSCENIKPSLKGKQNPPVC 388

[Close]

BLAST of Cmc01g0030381 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.2e-57
Identity = 117/266 (43.98%), Postives = 164/266 (61.65%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           +I+F+ VT+  ++  TS +SK FHI V    NI +  + I AP  SPNTDG+H+ +++ V
Sbjct: 151 NIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           N+  S I TGDDC+SIG G+ N+ +  ITCGPGHGI                   +GSLG
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGIS------------------IGSLG 270

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           K+++E+ V GI +SNCTI NT+NG RIKTW     G  + I F+DI ++ V +PI+IDQ 
Sbjct: 271 KFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQ 330

Query: 183 Y---GSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS 242
           Y      KK   S+VK+S++ FKNIRGT+  P A+   CS + PC +++L  ID+  +G+
Sbjct: 331 YCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGA 390

Query: 243 RSKQPFGNSCLNAKITTIGKQNPPAC 266
              +P  + CLN K  TIGK NP  C
Sbjct: 391 ---EPATSQCLNVKPITIGKLNPIPC 395

[Close]

BLAST of Cmc01g0030381 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.7e-56
Identity = 115/266 (43.23%), Postives = 163/266 (61.28%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           +I+F+ +T+  ++  TS +SK FHI V    NI +  + I AP  SPNTDG+H+ +++ V
Sbjct: 151 NIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGV 210

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           N+  S I TGDDC+SIG G+ N+ +  ITCGPGHGI                   +GSLG
Sbjct: 211 NIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGIS------------------IGSLG 270

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           K+++E+ V GI +SNCTI NT+NG RIKTW     G  + I F+DI ++ V +PI+IDQ 
Sbjct: 271 KFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQ 330

Query: 183 Y---GSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS 242
           Y      KK   S+VK+S++ FKNIRGT+  P A+   CS + PC +++L  ID+  +G+
Sbjct: 331 YCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGA 390

Query: 243 RSKQPFGNSCLNAKITTIGKQNPPAC 266
              +P  + CLN K  T GK NP  C
Sbjct: 391 ---EPATSQCLNVKPITSGKLNPIPC 395

[Close]

BLAST of Cmc01g0030381 vs. ExPASy TrEMBL
Match: A0A5D3D1R6 (Exopolygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001270 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 245/264 (92.80%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV
Sbjct: 184 SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 243

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 244 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 303

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT
Sbjct: 304 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 363

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK
Sbjct: 364 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 423

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPFGNSCLNAKITTIGKQNPPACV
Sbjct: 424 QPFGNSCLNAKITTIGKQNPPACV 429

[Close]

BLAST of Cmc01g0030381 vs. ExPASy TrEMBL
Match: A0A5A7TXI9 (Exopolygalacturonase clone OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00200 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 245/264 (92.80%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV
Sbjct: 184 SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 243

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 244 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 303

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT
Sbjct: 304 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 363

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK
Sbjct: 364 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 423

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPFGNSCLNAKITTIGKQNPPACV
Sbjct: 424 QPFGNSCLNAKITTIGKQNPPACV 429

[Close]

BLAST of Cmc01g0030381 vs. ExPASy TrEMBL
Match: A0A1S3BRS3 (exopolygalacturonase clone GBGE184 OS=Cucumis melo OX=3656 GN=LOC103492794 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 245/264 (92.80%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV
Sbjct: 184 SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 243

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 244 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 303

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT
Sbjct: 304 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 363

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK
Sbjct: 364 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 423

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPFGNSCLNAKITTIGKQNPPACV
Sbjct: 424 QPFGNSCLNAKITTIGKQNPPACV 429

[Close]

BLAST of Cmc01g0030381 vs. ExPASy TrEMBL
Match: A0A0A0K9C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404800 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 8.7e-124
Identity = 230/264 (87.12%), Postives = 236/264 (89.39%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SIKFNKVT G MEG TSVNSKAFHIFVVLSHNIKINN+HIVAPGNSPNTDGVHISQTDVV
Sbjct: 188 SIKFNKVTQGLMEGITSVNSKAFHIFVVLSHNIKINNVHIVAPGNSPNTDGVHISQTDVV 247

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGI                   VGSLG
Sbjct: 248 NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIS------------------VGSLG 307

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KY+DEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQ+IVLDKVRNPIIIDQ 
Sbjct: 308 KYRDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQNIVLDKVRNPIIIDQN 367

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGSRSK 242
           YGSK K+SPSQVK+SDVQFKNIRGTTISPVAVSLQCSAALPCD IKLEQIDVAFSG+  K
Sbjct: 368 YGSKTKKSPSQVKVSDVQFKNIRGTTISPVAVSLQCSAALPCDGIKLEQIDVAFSGTHLK 427

Query: 243 QPFGNSCLNAKITTIGKQNPPACV 267
           QPF NSCLNAKITTIGKQNPPACV
Sbjct: 428 QPFANSCLNAKITTIGKQNPPACV 433

[Close]

BLAST of Cmc01g0030381 vs. ExPASy TrEMBL
Match: A0A6J1GQF2 (exopolygalacturonase clone GBGE184 OS=Cucurbita moschata OX=3662 GN=LOC111456159 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.2e-95
Identity = 181/264 (68.56%), Postives = 208/264 (78.79%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           S+KFNKVT+G MEG +S+NSK FHIF+VLSH++++NN++I+AP  SPNTDG+HISQTD V
Sbjct: 192 SLKFNKVTNGLMEGISSLNSKGFHIFLVLSHHLRVNNLNIIAPDQSPNTDGIHISQTDNV 251

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
            +T+SIIGTGDDCVSIGHGS N+ V NI CGPGHGI                   VGSLG
Sbjct: 252 TITSSIIGTGDDCVSIGHGSVNVTVSNIKCGPGHGIS------------------VGSLG 311

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYKDEK+V GIFVSNCT++NTT GVRIKTWA SPP QAT I FQDIVLD V++PIIIDQ 
Sbjct: 312 KYKDEKDVSGIFVSNCTLKNTTFGVRIKTWADSPPSQATGIHFQDIVLDSVKSPIIIDQF 371

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS-RS 242
           YGSKK + PS+VKISDV +KNIRGTTIS V VSLQCS+A+PCD I LE ID+AF GS R 
Sbjct: 372 YGSKKNKKPSKVKISDVSYKNIRGTTISVVPVSLQCSSAVPCDGITLEDIDLAFIGSDRK 431

Query: 243 KQPFGNSCLNAKITTIGKQNPPAC 266
           K   GNSCLNAK    GKQNPPAC
Sbjct: 432 KALVGNSCLNAKFKATGKQNPPAC 437

[Close]

BLAST of Cmc01g0030381 vs. TAIR 10
Match: AT1G02790.1 (polygalacturonase 4 )

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-61
Identity = 121/270 (44.81%), Postives = 167/270 (61.85%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           S+KF  + +  + G +SVN+KAFH+F+V + N+ I NI + AP  SPNTDG+H+S  D V
Sbjct: 171 SLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNV 230

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           ++ +S I TGDDCVS+G GS N+ V  + CGPGHG+                   VGSLG
Sbjct: 231 SILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLS------------------VGSLG 290

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQT 182
           KYK+E++V GI V+NCT+  T NG+RIKTW  S P +A  I F++I++  V+NPIIIDQ 
Sbjct: 291 KYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQN 350

Query: 183 YGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSG---- 242
           YGS  +   SQV ISD+ FKNIRGTTI+   V + CS ++PC  + +  +++ + G    
Sbjct: 351 YGS--RGGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVNVVDVNLDYVGKTGG 410

Query: 243 ---SRSKQPFGNSCLNAKITTIGKQNPPAC 266
              S S    G  C NA +   GK + P C
Sbjct: 411 EKKSSSGGLVGALCDNANVIFGGKLSFPMC 420

[Close]

BLAST of Cmc01g0030381 vs. TAIR 10
Match: AT3G14040.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-56
Identity = 118/266 (44.36%), Postives = 161/266 (60.53%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           +I+F  +T+  +   TS NSK FH+ ++   NI + +I I AP  S NTDG+HI +++ V
Sbjct: 192 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNGV 251

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           N+  + I TGDDCVSIG G+ N+ V N+ CGPGHGI                   +GSLG
Sbjct: 252 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGIS------------------IGSLG 311

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQ- 182
           +Y +E+ V+G+ V  C I+NT NGVRIKTW  SPPG A+ I F+DI +D V  P++IDQ 
Sbjct: 312 RYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQE 371

Query: 183 --TYGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS 242
              YG  K   PS+VK+SDV  KNI+GT+ + VAV L CS  +PC +I L  I++  +G 
Sbjct: 372 YCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGK 431

Query: 243 RSKQPFGNSCLNAKITTIGKQNPPAC 266
               P  ++C N K    GK  P AC
Sbjct: 432 EG--PAVSACSNIKPILSGKLVPAAC 437

[Close]

BLAST of Cmc01g0030381 vs. TAIR 10
Match: AT3G07850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-56
Identity = 118/266 (44.36%), Postives = 161/266 (60.53%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           +I+F  +T+  +   TS NSK FH+ ++   NI +++I I AP  S NTDG+HI +++ V
Sbjct: 191 NIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGV 250

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
           N+  + I TGDDCVSIG G+ N+ V N+ CGPGHGI                   +GSLG
Sbjct: 251 NLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGIS------------------IGSLG 310

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPPGQATRITFQDIVLDKVRNPIIIDQ- 182
           +Y +E+ V+G+ V  C I+NT NGVRIKTW  SPPG A+ I F+DI +D V  P++IDQ 
Sbjct: 311 RYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQE 370

Query: 183 --TYGSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSGS 242
              YG  K   PSQVK+SDV  K I+GT+ + VAV L CS  +PC +I L  I++  +G 
Sbjct: 371 YCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDINLVHNGK 430

Query: 243 RSKQPFGNSCLNAKITTIGKQNPPAC 266
               P  ++C N K    GK  P AC
Sbjct: 431 EG--PAVSACSNIKPILSGKLVPAAC 436

[Close]

BLAST of Cmc01g0030381 vs. TAIR 10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 7.7e-56
Identity = 120/276 (43.48%), Postives = 163/276 (59.06%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           S+KF  +    +   +SVNSK FHI +V   + K   ++I AP +SPNTDG+HI ++  V
Sbjct: 156 SLKFVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNV 215

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
             + S I TGDDCVSIG G++ I + +I CGPGHGI                   VGSLG
Sbjct: 216 YFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGIS------------------VGSLG 275

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTWAASPP-GQATRITFQDIVLDKVRNPIIIDQ 182
           +Y +EK+V G+ V +C I  TTNG+RIKTWA SP    AT +TF++I+++ V NPIIIDQ
Sbjct: 276 RYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQ 335

Query: 183 TY---GSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSG 242
           +Y    S     PS+V++S++ FKNIRGT+ S VAV L CS  +PC  + LE + +  S 
Sbjct: 336 SYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSS 395

Query: 243 S---------RSKQPFGNSCLNAKITTIGKQNPPAC 266
           S         R  +   +SC N +   IG Q PP C
Sbjct: 396 SDGGRKQSSNRGNEAVSSSCRNVRANYIGTQIPPPC 413

[Close]

BLAST of Cmc01g0030381 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-54
Identity = 112/267 (41.95%), Postives = 165/267 (61.80%), Query Frame = 0


Query: 3   SIKFNKVTHGSMEGFTSVNSKAFHIFVVLSHNIKINNIHIVAPGNSPNTDGVHISQTDVV 62
           SI+F+ + +  +   +S+++K FHI V+ + N+ +NNI IVAP +SPNTDG+H+ ++D V
Sbjct: 140 SIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGV 199

Query: 63  NVTNSIIGTGDDCVSIGHGSTNINVLNITCGPGHGIRYIPMLLRESPIRKLRESYVGSLG 122
            + NS I TGDDC+S+G G  N++V  +TCGPGHGI                   VGSLG
Sbjct: 200 KILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGIS------------------VGSLG 259

Query: 123 KYKDEKEVRGIFVSNCTIRNTTNGVRIKTW-AASPPGQATRITFQDIVLDKVRNPIIIDQ 182
           +Y  E++V GI V NCT++ T NG+RIKTW +A+    A+ I F+DI+L  V NPI+IDQ
Sbjct: 260 RYGHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQ 319

Query: 183 TY---GSKKKRSPSQVKISDVQFKNIRGTTISPVAVSLQCSAALPCDSIKLEQIDVAFSG 242
            Y       K+  S +K+ ++ FKNIRGT+ +  AV L CS   PC ++++  ID+ ++G
Sbjct: 320 EYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNG 379

Query: 243 SRSKQPFGNSCLNAKITTIGKQNPPAC 266
           +     F   C N     +G Q+P AC
Sbjct: 380 ADGPATF--HCSNVSPKILGSQSPKAC 386

The following BLAST results are available for this feature:

BLAST of Cmc01g0030381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046656.1	2.3e-131	92.80	exopolygalacturonase clone [Cucumis melo var. makuwa]	[more]
XP_008451547.1	2.3e-131	92.80	PREDICTED: exopolygalacturonase clone GBGE184 [Cucumis melo] >TYK18191.1 exopoly...	[more]
XP_011659369.1	1.8e-123	87.12	exopolygalacturonase clone GBGE184 [Cucumis sativus] >KGN44972.1 hypothetical pr...	[more]
XP_038899827.1	5.8e-114	79.62	exopolygalacturonase clone GBGE184 [Benincasa hispida]	[more]
KAG7014349.1	7.1e-96	68.94	Exopolygalacturonase-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of Cmc01g0030381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49062	2.9e-60	44.81	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
Q6H9K0	3.3e-59	42.97	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]
Q05967	6.1e-58	43.98	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
Q39766	5.2e-57	43.98	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	5.7e-56	43.23	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of Cmc01g0030381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1R6	1.1e-131	92.80	Exopolygalacturonase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A5A7TXI9	1.1e-131	92.80	Exopolygalacturonase clone OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BRS3	1.1e-131	92.80	exopolygalacturonase clone GBGE184 OS=Cucumis melo OX=3656 GN=LOC103492794 PE=3 ...	[more]
A0A0A0K9C4	8.7e-124	87.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G404800 PE=3 SV=1	[more]
A0A6J1GQF2	2.2e-95	68.56	exopolygalacturonase clone GBGE184 OS=Cucurbita moschata OX=3662 GN=LOC111456159...	[more]

BLAST of Cmc01g0030381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02790.1	2.1e-61	44.81	polygalacturonase 4	[more]
AT3G14040.1	2.0e-56	44.36	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	2.6e-56	44.36	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	7.7e-56	43.48	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	1.1e-54	41.95	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 160..181 e-value: 5000.0 score: 2.2 coord: 130..151 e-value: 0.51 score: 19.4 coord: 59..80 e-value: 5000.0 score: 2.3 coord: 191..213 e-value: 7000.0 score: 1.2 coord: 32..58 e-value: 16.0 score: 14.4
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 118..240 e-value: 1.7E-33 score: 116.1 coord: 3..98 e-value: 2.5E-26 score: 92.5
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..264 e-value: 7.9E-75 score: 254.3
None	No IPR available	PANTHER	PTHR31375:SF158	POLYGALACTURONASE	coord: 2..262
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 2..262
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 4..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0030381.1	Cmc01g0030381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity