Cmc01g0030301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0030301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr01: 31334344 .. 31334853 (+)
RNA-Seq Expression	Cmc01g0030301
Synteny	Cmc01g0030301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCATGGTAGGAGAACTCTCATGTTTTTTGGGGCTTCAAATCAAGCAGAAGAGTGAAGGGATATTCATATTTCAAGAAAAGTATGTCAAGAATATAATTAAAAAGTTTGGATTAGAACAGTCTCGACAAAAGACGACTCCAGTTGCGACACATGTTAAAATTACCAAAGATATTGATGGTGCAAGAGCAAATCACAAACTTTACAGAAGTATAATCGGTAGTTTGGTGTATTTAACTACCAGTCGACTTTACATAGCTTATGCTGTTGGGATATGTGCTCGTTATCAGGTTGGCCCTCGAACATCACATTTAAAAGCTGTTAAACGGATCCTCAAATATGTTCATGGGACAAGTGATTTTGGAATTCTGTATTCCTATGACACAACATCTATTTTGGTTGGATATTGTGATGCTGATTGGGCAGGTTCCTCAGATGATAAGAAAAGCACATCTGGAGGTTGTTTCTTTCTAGGGAACAATCTTATCTCATGGTTCAGTAAGAAATAA

mRNA sequence

ATGAGCATGGTAGGAGAACTCTCATGTTTTTTGGGGCTTCAAATCAAGCAGAAGAGTGAAGGGATATTCATATTTCAAGAAAAGTATGTCAAGAATATAATTAAAAAGTTTGGATTAGAACAGTCTCGACAAAAGACGACTCCAGTTGCGACACATGTTAAAATTACCAAAGATATTGATGGTGCAAGAGCAAATCACAAACTTTACAGAAGTATAATCGGTAGTTTGGTGTATTTAACTACCAGTCGACTTTACATAGCTTATGCTGTTGGGATATGTGCTCGTTATCAGGTTGGCCCTCGAACATCACATTTAAAAGCTGTTAAACGGATCCTCAAATATGTTCATGGGACAAGTGATTTTGGAATTCTGTATTCCTATGACACAACATCTATTTTGGTTGGATATTGTGATGCTGATTGGGCAGGTTCCTCAGATGATAAGAAAAGCACATCTGGAGGTTGTTTCTTTCTAGGGAACAATCTTATCTCATGGTTCAGTAAGAAATAA

Coding sequence (CDS)

ATGAGCATGGTAGGAGAACTCTCATGTTTTTTGGGGCTTCAAATCAAGCAGAAGAGTGAAGGGATATTCATATTTCAAGAAAAGTATGTCAAGAATATAATTAAAAAGTTTGGATTAGAACAGTCTCGACAAAAGACGACTCCAGTTGCGACACATGTTAAAATTACCAAAGATATTGATGGTGCAAGAGCAAATCACAAACTTTACAGAAGTATAATCGGTAGTTTGGTGTATTTAACTACCAGTCGACTTTACATAGCTTATGCTGTTGGGATATGTGCTCGTTATCAGGTTGGCCCTCGAACATCACATTTAAAAGCTGTTAAACGGATCCTCAAATATGTTCATGGGACAAGTGATTTTGGAATTCTGTATTCCTATGACACAACATCTATTTTGGTTGGATATTGTGATGCTGATTGGGCAGGTTCCTCAGATGATAAGAAAAGCACATCTGGAGGTTGTTTCTTTCTAGGGAACAATCTTATCTCATGGTTCAGTAAGAAATAA

Protein sequence

MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK

Homology

[Close]

BLAST of Cmc01g0030301 vs. NCBI nr
Match: TYK18114.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 143/169 (84.62%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           MSMVGELSCFLGLQIKQKSE IFI QEKYVKNI+KKFGLEQSR K TP  T VKITKD +
Sbjct: 209 MSMVGELSCFLGLQIKQKSESIFISQEKYVKNIVKKFGLEQSRHKRTPATTQVKITKDTN 268

Query: 61  GARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSD 120
           GARA+HKLYRSII SL++LT SR  IAYAVGIC RYQ  P+ SHL+AVKRILKYVHGTSD
Sbjct: 269 GARADHKLYRSIIESLLHLTASRPDIAYAVGICVRYQTDPQMSHLEAVKRILKYVHGTSD 328

Query: 121 FGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           FGILYSYDTTSILVGYCDADWAGS+DD+K+TSGGCFFLGNNLISWFSKK
Sbjct: 329 FGILYSYDTTSILVGYCDADWAGSTDDRKTTSGGCFFLGNNLISWFSKK 377

[Close]

BLAST of Cmc01g0030301 vs. NCBI nr
Match: KAA0068014.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 143/169 (84.62%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           MSMVGELSCFLGLQIKQKSE IFI QEKYVKNI+KKFGLEQSR K TP  T VKITKD +
Sbjct: 209 MSMVGELSCFLGLQIKQKSESIFISQEKYVKNIVKKFGLEQSRHKRTPATTQVKITKDTN 268

Query: 61  GARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSD 120
           GARA+HKLYRSII SL++LT SR  IAYAVGIC RYQ  P+ SHL+AVKRILKYVHGTSD
Sbjct: 269 GARADHKLYRSIIESLLHLTASRPDIAYAVGICVRYQTDPQMSHLEAVKRILKYVHGTSD 328

Query: 121 FGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           FGILYSYDTTSILVGYCDADWAGS+DD+K+TSGGCFFLGNNLISWFSKK
Sbjct: 329 FGILYSYDTTSILVGYCDADWAGSTDDRKTTSGGCFFLGNNLISWFSKK 377

[Close]

BLAST of Cmc01g0030301 vs. NCBI nr
Match: KAA0036888.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 7.0e-73
Identity = 141/167 (84.43%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 3   MVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGA 62
           M+GELSCF GLQIKQKSE IFI QE Y KNI+KKFGLEQSR K T  A HVKITKD DGA
Sbjct: 1   MMGELSCFRGLQIKQKSEDIFISQEMYAKNIVKKFGLEQSRHKRTSAAIHVKITKDTDGA 60

Query: 63  RANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFG 122
           RA+HKLYRSIIGSL+YLTTS+  IAYA+GICARYQ   RTSHL+AVKRILKYVHGTSDFG
Sbjct: 61  RADHKLYRSIIGSLLYLTTSQPDIAYAIGICARYQADHRTSHLEAVKRILKYVHGTSDFG 120

Query: 123 ILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           ILYSYDTTSILVGYCDADWAG SDD+KSTSGGCF LGNNLISWFSKK
Sbjct: 121 ILYSYDTTSILVGYCDADWAGFSDDRKSTSGGCFILGNNLISWFSKK 167

[Close]

BLAST of Cmc01g0030301 vs. NCBI nr
Match: TYK29824.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 9.5e-70
Identity = 134/169 (79.29%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           MSMVGELSCFLGLQIKQ+S  IFI QEKYVKN++KKFGL+Q + K T VATHVK+TKDI+
Sbjct: 523 MSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDIN 582

Query: 61  GARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSD 120
           G   +HKLYRS++GSL+YL  S+L IAYAVGICAR+Q  PRTSHL  VKRILKYVHGTSD
Sbjct: 583 GTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARFQSDPRTSHLTVVKRILKYVHGTSD 642

Query: 121 FGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           FGILYS+DTTS LVGYCDADWAGS DD+KSTSGGCFF+GNNLISWFSKK
Sbjct: 643 FGILYSFDTTSTLVGYCDADWAGSPDDRKSTSGGCFFVGNNLISWFSKK 689

[Close]

BLAST of Cmc01g0030301 vs. NCBI nr
Match: KAA0064116.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 6.2e-69
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 10  FLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGARANHKLY 69
           F GLQIKQKSEGIFI QEKY K+IIKKFGLEQSR K TP ATHVKITKD +GARANHKLY
Sbjct: 54  FGGLQIKQKSEGIFISQEKYAKSIIKKFGLEQSRHKRTPAATHVKITKDTEGARANHKLY 113

Query: 70  RSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILYSYDT 129
           RSIIGSL+YLT SR  IAY VG CARYQ  PRTSHL+AVKRILKYVH TSDFGI+YSYDT
Sbjct: 114 RSIIGSLLYLTASRPNIAYTVGKCARYQADPRTSHLEAVKRILKYVHETSDFGIMYSYDT 173

Query: 130 TSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           TS LVGYCDADW GSSDD+KST GGCFFL NNLISWFSKK
Sbjct: 174 TSTLVGYCDADWVGSSDDRKSTFGGCFFLENNLISWFSKK 213

[Close]

BLAST of Cmc01g0030301 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 6    ELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGARAN 65
            +L  FLG++ K+  +G+ + Q +Y  +++ +  +  ++   TP+AT  K+T        +
Sbjct: 1165 DLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPD 1224

Query: 66   HKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILY 125
               YR I+GSL YL  +R  ++YAV   ++Y   P   H  A+KR+L+Y+ GT D GI  
Sbjct: 1225 PTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFL 1284

Query: 126  SYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
                T  L  Y DADWAG +DD  ST+G   +LG++ ISW SKK
Sbjct: 1285 KKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKK 1328

[Close]

BLAST of Cmc01g0030301 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-24
Identity = 62/164 (37.80%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 6    ELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGARAN 65
            EL  FLG++ K+   G+ + Q +Y+ +++ +  +  ++  TTP+A   K++        +
Sbjct: 1182 ELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTD 1241

Query: 66   HKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILY 125
               YR I+GSL YL  +R  I+YAV   +++   P   HL+A+KRIL+Y+ GT + GI  
Sbjct: 1242 PTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFL 1301

Query: 126  SYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
                T  L  Y DADWAG  DD  ST+G   +LG++ ISW SKK
Sbjct: 1302 KKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKK 1345

[Close]

BLAST of Cmc01g0030301 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 60/170 (35.29%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           M  +G +  FLG+QIK    G+F+ Q KY + I+   G+   +  +TP+   +K+   + 
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVS 92

Query: 61  GAR-ANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTS 120
            A+  +   +RSI+G+L YLT +R  I+YAV I  +    P  +    +KR+L+YV GT 
Sbjct: 93  TAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTI 152

Query: 121 DFGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
             G+    ++   +  +CD+DWAG +  ++ST+G C FLG N+ISW +K+
Sbjct: 153 FHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 200

[Close]

BLAST of Cmc01g0030301 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-20
Identity = 60/177 (33.90%), Postives = 103/177 (58.19%), Query Frame = 0


Query: 1    MSMVGELSCFLGLQI--KQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKD 60
            M  +G     LG++I  ++ S  +++ QEKY++ ++++F ++ ++  +TP+A H+K++K 
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKK 1094

Query: 61   IDGARANHK------LYRSIIGSLVY-LTTSRLYIAYAVGICARYQVGPRTSHLKAVKRI 120
            +       K       Y S +GSL+Y +  +R  IA+AVG+ +R+   P   H +AVK I
Sbjct: 1095 MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWI 1154

Query: 121  LKYVHGTSDFGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSK 169
            L+Y+ GT+   + +   +  IL GY DAD AG  D++KS++G  F      ISW SK
Sbjct: 1155 LRYLRGTTGDCLCFG-GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSK 1210

[Close]

BLAST of Cmc01g0030301 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-15
Identity = 41/102 (40.20%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 69  YRSIIGSLVYL-TTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILYSY 128
           Y S +G+++YL   +R  +A AVG+ +++   P  +H +A+KR+L+Y+  T  +G+ ++ 
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 129 DTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
             T+ LVGY DADWAG  + ++STSG  F L    +SW SKK
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKK 107

[Close]

BLAST of Cmc01g0030301 vs. ExPASy TrEMBL
Match: A0A5D3D3G3 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00400 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.1e-75
Identity = 143/169 (84.62%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           MSMVGELSCFLGLQIKQKSE IFI QEKYVKNI+KKFGLEQSR K TP  T VKITKD +
Sbjct: 209 MSMVGELSCFLGLQIKQKSESIFISQEKYVKNIVKKFGLEQSRHKRTPATTQVKITKDTN 268

Query: 61  GARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSD 120
           GARA+HKLYRSII SL++LT SR  IAYAVGIC RYQ  P+ SHL+AVKRILKYVHGTSD
Sbjct: 269 GARADHKLYRSIIESLLHLTASRPDIAYAVGICVRYQTDPQMSHLEAVKRILKYVHGTSD 328

Query: 121 FGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           FGILYSYDTTSILVGYCDADWAGS+DD+K+TSGGCFFLGNNLISWFSKK
Sbjct: 329 FGILYSYDTTSILVGYCDADWAGSTDDRKTTSGGCFFLGNNLISWFSKK 377

[Close]

BLAST of Cmc01g0030301 vs. ExPASy TrEMBL
Match: A0A5A7VKR7 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002070 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 8.1e-75
Identity = 143/169 (84.62%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           MSMVGELSCFLGLQIKQKSE IFI QEKYVKNI+KKFGLEQSR K TP  T VKITKD +
Sbjct: 209 MSMVGELSCFLGLQIKQKSESIFISQEKYVKNIVKKFGLEQSRHKRTPATTQVKITKDTN 268

Query: 61  GARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSD 120
           GARA+HKLYRSII SL++LT SR  IAYAVGIC RYQ  P+ SHL+AVKRILKYVHGTSD
Sbjct: 269 GARADHKLYRSIIESLLHLTASRPDIAYAVGICVRYQTDPQMSHLEAVKRILKYVHGTSD 328

Query: 121 FGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           FGILYSYDTTSILVGYCDADWAGS+DD+K+TSGGCFFLGNNLISWFSKK
Sbjct: 329 FGILYSYDTTSILVGYCDADWAGSTDDRKTTSGGCFFLGNNLISWFSKK 377

[Close]

BLAST of Cmc01g0030301 vs. ExPASy TrEMBL
Match: A0A5A7T284 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1480G00090 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.4e-73
Identity = 141/167 (84.43%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 3   MVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGA 62
           M+GELSCF GLQIKQKSE IFI QE Y KNI+KKFGLEQSR K T  A HVKITKD DGA
Sbjct: 1   MMGELSCFRGLQIKQKSEDIFISQEMYAKNIVKKFGLEQSRHKRTSAAIHVKITKDTDGA 60

Query: 63  RANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFG 122
           RA+HKLYRSIIGSL+YLTTS+  IAYA+GICARYQ   RTSHL+AVKRILKYVHGTSDFG
Sbjct: 61  RADHKLYRSIIGSLLYLTTSQPDIAYAIGICARYQADHRTSHLEAVKRILKYVHGTSDFG 120

Query: 123 ILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           ILYSYDTTSILVGYCDADWAG SDD+KSTSGGCF LGNNLISWFSKK
Sbjct: 121 ILYSYDTTSILVGYCDADWAGFSDDRKSTSGGCFILGNNLISWFSKK 167

[Close]

BLAST of Cmc01g0030301 vs. ExPASy TrEMBL
Match: A0A5D3E1T0 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00520 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.6e-70
Identity = 134/169 (79.29%), Postives = 150/169 (88.76%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           MSMVGELSCFLGLQIKQ+S  IFI QEKYVKN++KKFGL+Q + K T VATHVK+TKDI+
Sbjct: 523 MSMVGELSCFLGLQIKQRS--IFISQEKYVKNLVKKFGLDQCQHKRTSVATHVKVTKDIN 582

Query: 61  GARANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSD 120
           G   +HKLYRS++GSL+YL  S+L IAYAVGICAR+Q  PRTSHL  VKRILKYVHGTSD
Sbjct: 583 GTVVDHKLYRSLVGSLLYLMASKLDIAYAVGICARFQSDPRTSHLTVVKRILKYVHGTSD 642

Query: 121 FGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           FGILYS+DTTS LVGYCDADWAGS DD+KSTSGGCFF+GNNLISWFSKK
Sbjct: 643 FGILYSFDTTSTLVGYCDADWAGSPDDRKSTSGGCFFVGNNLISWFSKK 689

[Close]

BLAST of Cmc01g0030301 vs. ExPASy TrEMBL
Match: A0A5A7VCL5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00290 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.0e-69
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 10  FLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGARANHKLY 69
           F GLQIKQKSEGIFI QEKY K+IIKKFGLEQSR K TP ATHVKITKD +GARANHKLY
Sbjct: 54  FGGLQIKQKSEGIFISQEKYAKSIIKKFGLEQSRHKRTPAATHVKITKDTEGARANHKLY 113

Query: 70  RSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILYSYDT 129
           RSIIGSL+YLT SR  IAY VG CARYQ  PRTSHL+AVKRILKYVH TSDFGI+YSYDT
Sbjct: 114 RSIIGSLLYLTASRPNIAYTVGKCARYQADPRTSHLEAVKRILKYVHETSDFGIMYSYDT 173

Query: 130 TSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
           TS LVGYCDADW GSSDD+KST GGCFFL NNLISWFSKK
Sbjct: 174 TSTLVGYCDADWVGSSDDRKSTFGGCFFLENNLISWFSKK 213

[Close]

BLAST of Cmc01g0030301 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 62/166 (37.35%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 4   VGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDIDGAR 63
           +G L  FLGL+I + + GI I Q KY  +++ + GL   +  + P+   V  +    G  
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 64  ANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGI 123
            + K YR +IG L+YL  +RL I++AV   +++   PR +H +AV +IL Y+ GT   G+
Sbjct: 373 VDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL 432

Query: 124 LYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
            YS      L  + DA +    D ++ST+G C FLG +LISW SKK
Sbjct: 433 FYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKK 478

[Close]

BLAST of Cmc01g0030301 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 9.9e-25
Identity = 60/170 (35.29%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 1   MSMVGELSCFLGLQIKQKSEGIFIFQEKYVKNIIKKFGLEQSRQKTTPVATHVKITKDID 60
           M  +G +  FLG+QIK    G+F+ Q KY + I+   G+   +  +TP+   +K+   + 
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLP--LKLNSSVS 92

Query: 61  GAR-ANHKLYRSIIGSLVYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTS 120
            A+  +   +RSI+G+L YLT +R  I+YAV I  +    P  +    +KR+L+YV GT 
Sbjct: 93  TAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTI 152

Query: 121 DFGILYSYDTTSILVGYCDADWAGSSDDKKSTSGGCFFLGNNLISWFSKK 170
             G+    ++   +  +CD+DWAG +  ++ST+G C FLG N+ISW +K+
Sbjct: 153 FHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKR 200

[Close]

BLAST of Cmc01g0030301 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-08
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 77  VYLTTSRLYIAYAVGICARYQVGPRTSHLKAVKRILKYVHGTSDFGILYSYDTTSILVGY 136
           +YLT +R  + +AV   +++    RT+ ++AV ++L YV GT   G+ YS  +   L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 137 CDADWAGSSDDKKSTSGGC-----FFLG 160
            D+DWA   D ++S +G C     +FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc01g0030301 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK18114.1	1.7e-74	84.62	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0068014.1	1.7e-74	84.62	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036888.1	7.0e-73	84.43	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK29824.1	9.5e-70	79.29	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0064116.1	6.2e-69	84.38	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0030301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.7e-24	37.20	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.7e-24	37.80	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	1.4e-23	35.29	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	3.2e-20	33.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	3.1e-15	40.20	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc01g0030301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3G3	8.1e-75	84.62	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7VKR7	8.1e-75	84.62	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7T284	3.4e-73	84.43	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3E1T0	4.6e-70	79.29	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7VCL5	3.0e-69	84.38	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Cmc01g0030301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.4e-25	37.35	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.9e-25	35.29	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	1.7e-08	34.09	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 47..156
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 47..156
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 134..169 e-value: 2.10437E-17 score: 72.1157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0030301.1	Cmc01g0030301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding