Cmc01g0029971 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0029971
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 31155939 .. 31157965 (-)
RNA-Seq ExpressionCmc01g0029971
SyntenyCmc01g0029971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCAAAGCCCAAACATTACATCAACAAACCTCTCGTATGTTTAGACCGAACTTTTATCACTTAGCAATTCCGCGAATTGGCAAAGTACTGTTTAAAAATGAACTCTCAATTTCATGTTTCGTATCCATTTTAATGTCAATTTTATTTTGTCGCAAATTTCAAGTGAATCGCCAAGAAGAAGAAGATCAAAATCCAAACTCAAAGAGTACAGTTACAAATTATACAAACTTATATAACATTTAAATCCAAGACTCCACATAAAGTTCAAGAGAAATTTCAAATCTCCTTACATATTTAGTGCAGTTTCGTAACCAGAGGTAGCCAATTTGTTAACCAAAGCAAGTGCATTACTCGTAATATAACCAACTTTCACCACTCGATTTCTTAGCAAACTCACTACTTTTCCCCTTTCACCTTCAAATCCTTCAACGCAAGTATCTTCATCCGTCAGCGCAGCGCTGACCCACGTCGTTAGATCCCCCATTTGTGAGTCAAAATTCCTCCTACTCAATCTTCTAAGAACCCCAAGCGACCTGTGAAGCTCATCAATGGCGGCGTCAAACACTTCCACACAGTCCAAAACTGCTGCCCTGTTTCTACCCTTCATCCTCTTGTTGTTCTTCAACCTCCCCAGGAGTGCTGCCACTTTTTTTGCCTCTGTTATCGTCACCGACACCCCCGCTCGAGCCCATTTTGTGGGGCTGCGCTTGGCAGTGCTTGAAAATGGCGACAGGGACTGAATGCAGAGATCTTGGTGTAGTGTTACCCTGCAGGCTTCTTGGACATAGCTCGTTTTGGCGGAGTGGGTTAGCCATGGGAGAATGGAGATGAGGGCCAAAAGGGCTGCGATTGATGCTCTTGTACTGGGTGGACGCATCATATTTGATGAAATGTCTGAAAGAAGTGAAAAAGGTATGTGGGGATAGAAGATAAATTTCGATGAAATCAGTATATAGTGGGTTGATTTGTGAACGAGATTGAGATTAATGTGGGGATTAATGAGATTATGGGTCGATTATATAGTGGGGAAAAGGGTATTGGGGTGACTTGAAAAGTTCATTTTGGATAACTTTTTGCAGGTTTTTGCTATAAATTAGGCGTGGAGATGGTGAATGCATTGAAGAAGGGGAGAAGAAGTAGTGATGAAGTGAAATAAGTTAAGAAGGTGAAGAACATGTGAATGGCAGGTGAGTTCTCATGAACTTTAGAATAAAGGAAATCTTGGAAAATTTGGTATCTGTCTCACCAGAATTTACTATACGTCTTTGACTTGTAGATCATGAAATTTCTGTACATAGATTAAACTTCTAACCAAAAAGAAGTTCACGTGGGGAAAATTATTTACTTGAATATGGGAAAACAAAAGATTTACCCTATCATATTACCTATTTGTAATTAGCTTGAGTGATGAGGATAATGGGCGTTTCACTAGTTTCAAACGGATCTATTACTCTACAAGGCCAAGAAGGTTCGGCAAGCAATCATTTTTCAACTAGAAATTTAGATAGGTTTGGTTCAACCTTCATTTCATTACAAGCTAAAACCCCTTCGGGGACCTCCGATAATATTGGGACGATACGGAAAGGATTAACATAGCCCCACACAATTCATTACGAGCTTTCGAGTCATAAAGCTTCATTTGAAGCTTTGGAGATCACATTTGTAAGCTTGAAGTCGAGAATGGAGTTGCCTTTGGTAAGAGTTTGGCAAGCACTTACAACTTGATATATTATTTTAGTTTCATAAGCTCTTGAGTGTATATTCAACTTCTAATTATCTGTTTCAAGTTTAGATAATTAAGTATAAGAGTTACCAAACATGTCAATCATACCTACTTTTTTAATAAGCTTTGGGCAGGTTTCTTTTGTGGGGTGGCTGTAGATACCCACTAATTTTGCTTTTTAAAAAAATCAGATTATGATGAATGAAATTTGAATTTTTCATGTTCAAGACTTTCTTTCAGAATTCCAAAATAATACTCTGTTGTTTTAAGTTTTCTTACCATTTATATGGTAGATTCCAAC

mRNA sequence

AATTTCAAAGCCCAAACATTACATCAACAAACCTCTCGTATGTTTAGACCGAACTTTTATCACTTAGCAATTCCGCGAATTGGCAAAGTACTGTTTAAAAATGAACTCTCAATTTCATGTTTCGTATCCATTTTAATGTCAATTTTATTTTGTCGCAAATTTCAAGTGAATCGCCAAGAAGAAGAAGATCAAAATCCAAACTCAAAGAGTACAGTTACAAATTATACAAACTTATATAACATTTAAATCCAAGACTCCACATAAAGTTCAAGAGAAATTTCAAATCTCCTTACATATTTAGTGCAGTTTCGTAACCAGAGGTAGCCAATTTGTTAACCAAAGCAAGTGCATTACTCGTAATATAACCAACTTTCACCACTCGATTTCTTAGCAAACTCACTACTTTTCCCCTTTCACCTTCAAATCCTTCAACGCAAGTATCTTCATCCGTCAGCGCAGCGCTGACCCACGTCGTTAGATCCCCCATTTGTGAGTCAAAATTCCTCCTACTCAATCTTCTAAGAACCCCAAGCGACCTGTGAAGCTCATCAATGGCGGCGTCAAACACTTCCACACAGTCCAAAACTGCTGCCCTGTTTCTACCCTTCATCCTCTTGTTGTTCTTCAACCTCCCCAGGAGTGCTGCCACTTTTTTTGCCTCTGTTATCGTCACCGACACCCCCGCTCGAGCCCATTTTGTGGGGCTGCGCTTGGCAGTGCTTGAAAATGGCGACAGGGACTGAATGCAGAGATCTTGGTGTAGTGTTACCCTGCAGGCTTCTTGGACATAGCTCGTTTTGGCGGAGTGGGTTAGCCATGGGAGAATGGAGATGAGGGCCAAAAGGGCTGCGATTGATGCTCTTGTACTGGGTGGACGCATCATATTTGATGAAATGTCTGAAAGAAGTGAAAAAGGTTTTTGCTATAAATTAGGCGTGGAGATGGTGAATGCATTGAAGAAGGGGAGAAGAAGTAGTGATGAAGTGAAATAAGTTAAGAAGGTGAAGAACATGTGAATGGCAGGTGAGTTCTCATGAACTTTAGAATAAAGGAAATCTTGGAAAATTTGGTATCTGTCTCACCAGAATTTACTATACGTCTTTGACTTGTAGATCATGAAATTTCTGTACATAGATTAAACTTCTAACCAAAAAGAAGTTCACGTGGGGAAAATTATTTACTTGAATATGGGAAAACAAAAGATTTACCCTATCATATTACCTATTTGTAATTAGCTTGAGTGATGAGGATAATGGGCGTTTCACTAGTTTCAAACGGATCTATTACTCTACAAGGCCAAGAAGGTTCGGCAAGCAATCATTTTTCAACTAGAAATTTAGATAGGTTTGGTTCAACCTTCATTTCATTACAAGCTAAAACCCCTTCGGGGACCTCCGATAATATTGGGACGATACGGAAAGGATTAACATAGCCCCACACAATTCATTACGAGCTTTCGAGTCATAAAGCTTCATTTGAAGCTTTGGAGATCACATTTGTAAGCTTGAAGTCGAGAATGGAGTTGCCTTTGGTAAGAGTTTGGCAAGCACTTACAACTTGATATATTATTTTAGTTTCATAAGCTCTTGAGTGTATATTCAACTTCTAATTATCTGTTTCAAGTTTAGATAATTAAGTATAAGAGTTACCAAACATGTCAATCATACCTACTTTTTTAATAAGCTTTGGGCAGGTTTCTTTTGTGGGGTGGCTGTAGATACCCACTAATTTTGCTTTTTAAAAAAATCAGATTATGATGAATGAAATTTGAATTTTTCATGTTCAAGACTTTCTTTCAGAATTCCAAAATAATACTCTGTTGTTTTAAGTTTTCTTACCATTTATATGGTAGATTCCAAC

Coding sequence (CDS)

ATGGCGGCGTCAAACACTTCCACACAGTCCAAAACTGCTGCCCTGTTTCTACCCTTCATCCTCTTGTTGTTCTTCAACCTCCCCAGGAGTGCTGCCACTTTTTTTGCCTCTGTTATCGTCACCGACACCCCCGCTCGAGCCCATTTTGTGGGGCTGCGCTTGGCAGTGCTTGAAAATGGCGACAGGGACTGA

Protein sequence

MAASNTSTQSKTAALFLPFILLLFFNLPRSAATFFASVIVTDTPARAHFVGLRLAVLENGDRD
Homology
[Close]
BLAST of Cmc01g0029971 vs. NCBI nr
Match: KAG7030219.1 (Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 1  MAASNTSTQSKTAALFLPFILLLFFNLPRSAATFFASVIVTDTPARAHFV 51
          MA+S TSTQS+TAALFLPFI LLFF+L ++ AT  ASVIVTDT A AHF+
Sbjct: 1  MASSKTSTQSETAALFLPFIRLLFFSLTKNLATALASVIVTDTLALAHFL 50

[Close]
BLAST of Cmc01g0029971 vs. NCBI nr
Match: KAF7804862.1 (UDP-glucuronic acid decarboxylase 2 [Senna tora])

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-04
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 14  ALFLPFILLLFFNLPRSAATFFASVIVTDTPARAHFVGLRLAVLENGDRD 64
           ALFLP I    F+  R A+ F  SVIVTDTPA AH +GL LAV ENG  D
Sbjct: 139 ALFLPLIAWYLFSFARCASIFLTSVIVTDTPALAHLLGLLLAVFENGVSD 188

The following BLAST results are available for this feature:
BLAST of Cmc01g0029971 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030219.11.9e-0772.00Serine/arginine-rich-splicing factor SR34, partial [Cucurbita argyrosperma subsp... [more]
KAF7804862.12.6e-0460.00UDP-glucuronic acid decarboxylase 2 [Senna tora][more]
BLAST of Cmc01g0029971 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc01g0029971 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc01g0029971 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0029971.1Cmc01g0029971.1mRNA