Cmc01g0029621 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0029621
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Integrase catalytic domain-containing protein
Location	CMiso1.1chr01: 30907391 .. 30907582 (-)
RNA-Seq Expression	Cmc01g0029621
Synteny	Cmc01g0029621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAGTTCGCTAAGTTTGAAAAGTTCAAAGAGTGCAGACTAGCCAAGGAGTTTGGATACGGTTTCTCGATCGTAGATCCAGGGATCACAGATGAGATCTCCCCATGGCCTTTTACCTCTGAAAGCGTCCTTCTTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCTATATAGTAGGGACTGA

mRNA sequence

ATGTTTCAGTTCGCTAAGTTTGAAAAGTTCAAAGAGTGCAGACTAGCCAAGGAGTTTGGATACGGTTTCTCGATCGTAGATCCAGGGATCACAGATGAGATCTCCCCATGGCCTTTTACCTCTGAAAGCGTCCTTCTTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCTATATAGTAGGGACTGA

Coding sequence (CDS)

ATGTTTCAGTTCGCTAAGTTTGAAAAGTTCAAAGAGTGCAGACTAGCCAAGGAGTTTGGATACGGTTTCTCGATCGTAGATCCAGGGATCACAGATGAGATCTCCCCATGGCCTTTTACCTCTGAAAGCGTCCTTCTTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCTATATAGTAGGGACTGA

Protein sequence

MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLYSRD

Homology

[Close]

BLAST of Cmc01g0029621 vs. NCBI nr
Match: KAA0042455.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 53/62 (85.48%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
          MFQFAKFEK KE RLA E GYGF I DP ITDEISPWPF SESVL SQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 SR 63
          SR
Sbjct: 61 SR 62

[Close]

BLAST of Cmc01g0029621 vs. NCBI nr
Match: KAA0066844.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27992.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 52/61 (85.25%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
          MFQFAKFEK KE RLA E GYGF I DP ITDEISPWPF SESVL SQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Cmc01g0029621 vs. NCBI nr
Match: OIT33719.1 (putative mitochondrial protein, partial [Nicotiana attenuata])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSF 59
           MFQFAKFEK KECRLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF
Sbjct: 46  MFQFAKFEKSKECRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 103

[Close]

BLAST of Cmc01g0029621 vs. NCBI nr
Match: DAD25653.1 (TPA_asm: hypothetical protein HUJ06_027117 [Nelumbo nucifera])

HSP 1 Score: 104.4 bits (259), Expect = 3.7e-19
Identity = 50/61 (81.97%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1   MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
           MFQFAKFEK KE RLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  S 62
           S
Sbjct: 105 S 105

[Close]

BLAST of Cmc01g0029621 vs. NCBI nr
Match: RWR83731.1 (putative mitochondrial protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 104.4 bits (259), Expect = 3.7e-19
Identity = 50/61 (81.97%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1   MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
           MFQFAKFEK KE RLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  S 62
           S
Sbjct: 105 S 105

[Close]

BLAST of Cmc01g0029621 vs. ExPASy Swiss-Prot
Match: P93276 (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-20
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSF 59
          MFQFAKF K KE RLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 58

[Close]

BLAST of Cmc01g0029621 vs. ExPASy TrEMBL
Match: A0A5A7TLZ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45606G00030 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 53/62 (85.48%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
          MFQFAKFEK KE RLA E GYGF I DP ITDEISPWPF SESVL SQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 SR 63
          SR
Sbjct: 61 SR 62

[Close]

BLAST of Cmc01g0029621 vs. ExPASy TrEMBL
Match: A0A5D3DWU4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002030 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.6e-21
Identity = 52/61 (85.25%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
          MFQFAKFEK KE RLA E GYGF I DP ITDEISPWPF SESVL SQCPGIHPMHSFLY
Sbjct: 1  MFQFAKFEKSKERRLATELGYGFPIGDPWITDEISPWPFASESVLPSQCPGIHPMHSFLY 60

Query: 61 S 62
          S
Sbjct: 61 S 61

[Close]

BLAST of Cmc01g0029621 vs. ExPASy TrEMBL
Match: A0A314KY62 (Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_61251 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.1e-20
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSF 59
           MFQFAKFEK KECRLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF
Sbjct: 46  MFQFAKFEKSKECRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 103

[Close]

BLAST of Cmc01g0029621 vs. ExPASy TrEMBL
Match: A0A443NZ14 (Putative mitochondrial protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01249300 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 50/61 (81.97%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1   MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSFLY 60
           MFQFAKFEK KE RLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF Y
Sbjct: 45  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRY 104

Query: 61  S 62
           S
Sbjct: 105 S 105

[Close]

BLAST of Cmc01g0029621 vs. ExPASy TrEMBL
Match: Q5M9R1 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 48/58 (82.76%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSF 59
           MFQFAKFEK KE RLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF
Sbjct: 47  MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 104

[Close]

BLAST of Cmc01g0029621 vs. TAIR 10
Match: ATMG00030.1 (hypothetical protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-21
Identity = 47/58 (81.03%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 1  MFQFAKFEKFKECRLAKEFGYGFSIVDPGITDEISPWPFTSESVLLSQCPGIHPMHSF 59
          MFQFAKF K KE RLA E GYGF I DP ITD ISPWPF SESVL SQCPGIHPMHSF
Sbjct: 1  MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSF 58

The following BLAST results are available for this feature:

BLAST of Cmc01g0029621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042455.1	2.3e-21	85.48	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0066844.1	1.2e-20	85.25	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27992.1 putative m...	[more]
OIT33719.1	1.7e-19	84.48	putative mitochondrial protein, partial [Nicotiana attenuata]	[more]
DAD25653.1	3.7e-19	81.97	TPA_asm: hypothetical protein HUJ06_027117 [Nelumbo nucifera]	[more]
RWR83731.1	3.7e-19	81.97	putative mitochondrial protein [Cinnamomum micranthum f. kanehirae]	[more]

BLAST of Cmc01g0029621 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93276	2.1e-20	81.03	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc01g0029621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLZ4	1.1e-21	85.48	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DWU4	5.6e-21	85.25	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A314KY62	8.1e-20	84.48	Putative mitochondrial protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A...	[more]
A0A443NZ14	1.8e-19	81.97	Putative mitochondrial protein OS=Cinnamomum micranthum f. kanehirae OX=337451 G...	[more]
Q5M9R1	2.0e-18	82.76	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=orf138c PE=4 SV=1	[more]

BLAST of Cmc01g0029621 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00030.1	1.5e-21	81.03	hypothetical protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044987	Uncharacterized mitochondrial protein AtMg00030-like	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0029621.1	Cmc01g0029621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding