Cmc01g0027641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0027641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 28828457 .. 28829872 (-)
RNA-Seq Expression	Cmc01g0027641
Synteny	Cmc01g0027641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCCGCAGAGCTGAAAGAACTAAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGCTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTCAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGCGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCAGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTTAGTCAGGTTTGTAGCTTTCTGGGTTTAGCAGGTTCTTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTATCGCACCGGTTCTTACTGTACCTAATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTTCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAATATGGCTTGAGTTAGTGAAGGATTACAATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCTATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGAGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGGGGCCTAGCAGAGGCAGGGTAG

mRNA sequence

ATGGCCCCCGCAGAGCTGAAAGAACTAAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGCTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTCAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGCGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCAGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTTAGTCAGGTTTGTAGCTTTCTGGGTTTAGCAGGTTCTTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTATCGCACCGGTTCTTACTGTACCTAATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTTCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAATATGGCTTGAGTTAGTGAAGGATTACAATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCTATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGAGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGGGGCCTAGCAGAGGCAGGGTAG

Coding sequence (CDS)

ATGGCCCCCGCAGAGCTGAAAGAACTAAAAGTGCAGTTACAGGAATTGCTCGATAAGGGATTCATTCGACCGAGTGTGTCACCTTGGGCTGCGCCAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGTCTATGCATTGACTACAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAGGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGGTCGGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTCAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATCTTGATATATTCCAAGACGGAGGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAACACTTCGCGATAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGCAGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCAGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACCCGACCTTCCACAGTTAGTCAGGTTTGTAGCTTTCTGGGTTTAGCAGGTTCTTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAAAACCTTAAACAGAAGCTAGTTATCGCACCGGTTCTTACTGTACCTAATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAGGGTTTGGGTTGTGTTTTGATGCAACAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCAGTGGTTTTTTCTTTGAAAATATGGAGGCATTACTTATATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAATATGGCTTGAGTTAGTGAAGGATTACAATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCTATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGAGCAGTCACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCGGGGCCTAGCAGAGGCAGGGTAG

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG

Homology

[Close]

BLAST of Cmc01g0027641 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 913.3 bits (2359), Expect = 8.6e-262
Identity = 459/471 (97.45%), Postives = 463/471 (98.30%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 580  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 640  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 700  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 760  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 820  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 879

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 880  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 939

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 940  KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 999

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 1000 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 1050

[Close]

BLAST of Cmc01g0027641 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 911.0 bits (2353), Expect = 4.3e-261
Identity = 458/471 (97.24%), Postives = 462/471 (98.09%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 834  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 893

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 894  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 953

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 954  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1013

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 1014 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1073

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 1074 SRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1133

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 1134 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 1193

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 1194 KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 1253

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 1254 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 1304

[Close]

BLAST of Cmc01g0027641 vs. NCBI nr
Match: KAA0062719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 909.4 bits (2349), Expect = 1.2e-260
Identity = 458/471 (97.24%), Postives = 463/471 (98.30%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 127 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 186

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 187 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 246

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
           NA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 247 NALAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 306

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 307 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 366

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 367 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 426

Query: 301 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
           GCVL+QQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 427 GCVLIQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 486

Query: 361 KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
           KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 487 KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 546

Query: 421 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
           DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 547 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 597

[Close]

BLAST of Cmc01g0027641 vs. NCBI nr
Match: KAA0040689.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 908.3 bits (2346), Expect = 2.8e-260
Identity = 456/471 (96.82%), Postives = 461/471 (97.88%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 738  MAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 797

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 798  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 857

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 858  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 917

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 918  KCEFWLKQVSFLGHVVSKAGVSVDPVKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 977

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVL VP+GSGSFVIYSDASKKGL
Sbjct: 978  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFVIYSDASKKGL 1037

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 1038 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 1097

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 1098 KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 1157

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 1158 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 1208

[Close]

BLAST of Cmc01g0027641 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 907.9 bits (2345), Expect = 3.6e-260
Identity = 456/471 (96.82%), Postives = 460/471 (97.66%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 614  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 673

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 674  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 733

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKF 
Sbjct: 734  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFL 793

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 794  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 853

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 854  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 913

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 914  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 973

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 974  KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 1033

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAE G
Sbjct: 1034 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEVG 1084

[Close]

BLAST of Cmc01g0027641 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.0e-83
Identity = 158/403 (39.21%), Postives = 249/403 (61.79%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSPWAAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    V KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSK 186
           APA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENFS 246
           CEF  ++ +FLGHV++  G+  +P KIEA+  +  P+   ++ +FLGL G YR+F+ NF+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 306
            IA P+T+  +K      +    DS F+ LK  +   P+L VP+ +  F + +DAS   L
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVAL 520

Query: 307 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 366
           G VL Q G  ++Y SR L  HE NY T + EL A+V++ K +RHYL G   +I +DH+ L
Sbjct: 521 GAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPL 580

Query: 367 KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSR 404
            + +  K+ N +   W   + +++ +I Y  GK N VADALSR
Sbjct: 581 SWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc01g0027641 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 9.8e-83
Identity = 154/402 (38.31%), Postives = 242/402 (60.20%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  + KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKC 187
           PA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENFSR 247
           EF  K+ +FLGH+V+  G+  +P K++A+ S+  P+   ++ +FLGL G YR+F+ N++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGLG 307
           IA P+T   +K       K    ++F+ LK  ++  P+L +P+    FV+ +DAS   LG
Sbjct: 461 IAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALG 520

Query: 308 CVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSLK 367
            VL Q G  +++ SR L  HE NY   + EL A+V++ K +RHYL G +  I +DH+ L+
Sbjct: 521 AVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLR 580

Query: 368 YFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSR 404
           +    KE   +   W   + +Y  +I Y  GK N VADALSR
Sbjct: 581 WLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc01g0027641 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.1e-81
Identity = 155/417 (37.17%), Postives = 246/417 (58.99%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSPWAAPVLFVKKK-----DGSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+ ELL  G IRPS SP+ +P+  V KK     +   R+ +D++ LN VT+ + YP
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNA 127
           +P I+     L  A  F+ +DL SG+HQ+ +K+ D+PKTAF +  G YEF+ + FGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 128 PAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKC 187
           PA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    L     K 
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 188 EFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENFSR 247
            F   QV FLG++V+  G+  DP K+ A++    P++V ++  FLG+   YR+F++++++
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

Query: 248 IATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVI 307
           +A PLT LTR              P    +    SF +LK  L  + +L  P  +  F +
Sbjct: 378 VAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHL 437

Query: 308 YSDASKKGLGCVLMQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLY 367
            +DAS   +G VL Q    + + +AY SR L   E+NY T + E+ A+++SL   R YLY
Sbjct: 438 TTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLY 497

Query: 368 GE-KIQIFTDHKSLKYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSR 404
           G   I+++TDH+ L +    +  N + + W   +++YNCE++Y PGK+NVVADALSR
Sbjct: 498 GAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554

[Close]

BLAST of Cmc01g0027641 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 7.2e-78
Identity = 155/417 (37.17%), Postives = 244/417 (58.51%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +  A PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
           KCEF   QV F+G+ +S+ G +     I+ V  W +P    ++  FLG     R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
           S++  PL  L +K   + W+     + +N+KQ LV  PVL   + S   ++ +DAS   +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYG--EKIQI 360
           G VL Q+        V Y S ++   + NY   D E+ A++ SLK WRHYL    E  +I
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779

Query: 361 FTDHKSLKYFFTQKE--LNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHS 409
            TDH++L    T +    N R   W   ++D+N EI Y PG AN +ADALSR V  +
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET 836

[Close]

BLAST of Cmc01g0027641 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 7.2e-78
Identity = 155/417 (37.17%), Postives = 244/417 (58.51%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +  A PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
           KCEF   QV F+G+ +S+ G +     I+ V  W +P    ++  FLG     R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
           S++  PL  L +K   + W+     + +N+KQ LV  PVL   + S   ++ +DAS   +
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719

Query: 301 GCVLMQQGK-----VVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYG--EKIQI 360
           G VL Q+        V Y S ++   + NY   D E+ A++ SLK WRHYL    E  +I
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779

Query: 361 FTDHKSLKYFFTQKE--LNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHS 409
            TDH++L    T +    N R   W   ++D+N EI Y PG AN +ADALSR V  +
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDET 836

[Close]

BLAST of Cmc01g0027641 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 913.3 bits (2359), Expect = 4.2e-262
Identity = 459/471 (97.45%), Postives = 463/471 (98.30%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 580  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 639

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 640  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 699

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 700  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 759

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 760  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 819

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 820  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 879

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 880  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 939

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 940  KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 999

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 1000 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 1050

[Close]

BLAST of Cmc01g0027641 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 911.0 bits (2353), Expect = 2.1e-261
Identity = 458/471 (97.24%), Postives = 462/471 (98.09%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 834  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 893

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 894  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 953

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 954  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 1013

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 1014 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 1073

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQ LKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 1074 SRIATPLTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 1133

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 1134 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 1193

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 1194 KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 1253

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 1254 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 1304

[Close]

BLAST of Cmc01g0027641 vs. ExPASy TrEMBL
Match: A0A5A7VAL8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00460 PE=4 SV=1)

HSP 1 Score: 909.4 bits (2349), Expect = 6.0e-261
Identity = 458/471 (97.24%), Postives = 463/471 (98.30%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 127 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 186

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 187 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 246

Query: 121 NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
           NA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 247 NALAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 306

Query: 181 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
           KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 307 KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENF 366

Query: 241 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
           SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 367 SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 426

Query: 301 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
           GCVL+QQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 427 GCVLIQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 486

Query: 361 KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
           KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 487 KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 546

Query: 421 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
           DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 547 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 597

[Close]

BLAST of Cmc01g0027641 vs. ExPASy TrEMBL
Match: A0A5A7THE6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00030 PE=4 SV=1)

HSP 1 Score: 908.3 bits (2346), Expect = 1.3e-260
Identity = 456/471 (96.82%), Postives = 461/471 (97.88%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPS+SPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 738  MAPAELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 797

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 798  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 857

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS
Sbjct: 858  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 917

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 918  KCEFWLKQVSFLGHVVSKAGVSVDPVKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 977

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVL VP+GSGSFVIYSDASKKGL
Sbjct: 978  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLIVPDGSGSFVIYSDASKKGL 1037

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 1038 GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 1097

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 1098 KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 1157

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG
Sbjct: 1158 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 1208

[Close]

BLAST of Cmc01g0027641 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 907.9 bits (2345), Expect = 1.8e-260
Identity = 456/471 (96.82%), Postives = 460/471 (97.66%), Query Frame = 0


Query: 1    MAPAELKELKVQLQELLDKGFIRPSVSPWAAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
            MAPAELKELKVQLQELLDKGFIRPSVSPW APVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 614  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 673

Query: 61   YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLT 120
            YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLT
Sbjct: 674  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLT 733

Query: 121  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFS 180
            NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNKLYAKF 
Sbjct: 734  NAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNKLYAKFL 793

Query: 181  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSQVCSFLGLAGSYRRFVENF 240
            KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT WTRPSTVS+V SFLGLAG YRRFVENF
Sbjct: 794  KCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENF 853

Query: 241  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPVLTVPNGSGSFVIYSDASKKGL 300
            SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLV APVLTVP+GSGSFVIYSDASKKGL
Sbjct: 854  SRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGL 913

Query: 301  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFSLKIWRHYLYGEKIQIFTDHKSL 360
            GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVF+LKIWRHYLYGEKIQIFTDHKSL
Sbjct: 914  GCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSL 973

Query: 361  KYFFTQKELNMRQRIWLELVKDYNCEILYHPGKANVVADALSRKVSHSAALITRQALLHR 420
            KYFFTQKELNMRQR WLELVKDY+CEILYHPGKANVVADALSRKVSHSAALITRQA LHR
Sbjct: 974  KYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHR 1033

Query: 421  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAG 472
            DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAE G
Sbjct: 1034 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEVG 1084

[Close]

BLAST of Cmc01g0027641 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-23
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 162 HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWTRPST 221
           HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSQVCSFLGLAGSYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVIAPV 281
            +++  FLGL G YRRFV+N+ +I  PLT+L +K +   W++    +F+ LK  +   PV
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

Query: 282 LTVPNGSGSFV 291
           L +P+    FV
Sbjct: 123 LALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc01g0027641 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048687.1	8.6e-262	97.45	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	4.3e-261	97.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062719.1	1.2e-260	97.24	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040689.1	2.8e-260	96.82	pol protein [Cucumis melo var. makuwa]	[more]
KAA0037244.1	3.6e-260	96.82	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0027641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.0e-83	39.21	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	9.8e-83	38.31	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	3.1e-81	37.17	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	7.2e-78	37.17	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.2e-78	37.17	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0027641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U330	4.2e-262	97.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5D3BPI1	2.1e-261	97.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7VAL8	6.0e-261	97.24	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00460 PE...	[more]
A0A5A7THE6	1.3e-260	96.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5A7T190	1.8e-260	96.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]

BLAST of Cmc01g0027641 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.3e-23	41.22	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..195 e-value: 3.4E-29 score: 101.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 11.458491
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 3.4E-88 score: 296.5
None	No IPR available	GENE3D	3.10.20.370		coord: 291..354 e-value: 4.2E-8 score: 35.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..400
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..400
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 290..405 e-value: 6.92495E-57 score: 182.307
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 2.99262E-99 score: 293.347
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 3.4E-88 score: 296.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..290 e-value: 7.1E-28 score: 98.5
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 288..383 e-value: 8.6E-33 score: 112.8
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..389

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0027641.1	Cmc01g0027641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding