Cmc01g0027121 (gene) Melon (Charmono) v1.1

Overview
NameCmc01g0027121
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr01: 28229826 .. 28230933 (+)
RNA-Seq ExpressionCmc01g0027121
SyntenyCmc01g0027121
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGTTTTTGATTGTTGAGGGAGTGAAAAGAAATATTGCTCGACTATAGGTTAAAACAAGTTAAAAACAATTTTGCTATGGAGAATTTTAAAATCAATTTATTGAAACAACATGAGGCGTCCACTGTAGCTTCATCATCCTTCTGCATTGTAGCTTCATTATCTTTCTTCATTGTAGCTTCATTCTTGTTGTTCATTGGAGCTTCATTTTCTTCATTGAGATAAGGATGTTGGAGTAGCATTTCAGCCGTCCACCGTTCTTTATAATTTCGAATAAAGCATTTTTTAATGAAGTCCTTACCTTGTTCGGATAACTCCCCAGGTATTGTTGGCATAATCTTGTTATCCAAAAGTTTTATCATCAATTGTTTAGAATCTTTACAATCATCCCACGCAGACTTTCCAGAAATCATTTTAACCAAAATGCAACCCAACGACCAAATATCGTCCGCGTCATTGACTTCGTTGAATACCACGGATTCAGGTGACATATATCTAGGTGTTCCTTTAAACTTGAACGAACTGCAACACGGCGGGTACTGTTTATGTTGATCATCAACCCTATACTTTGATCTCTCTGCTTGTCCAAAGTCAGCAATTTTTAACTTCATCTTACCATCACTTTGAGGGAATGCAAGAATGTTGTTAGGCTTAAGATCAACGTGAACAAATCCCTTACTATGAATACAAGAGAGACCTTTAAGTATCATTCGAAGATAATCTTTCACCTCAGCTTCAGGTAACTTGTCTCTTTGTTCGATCAAGTCATCCAAAGTCCCTCCCGCAGCATACTCCAACTTCAGAGTGTAAAAATCCACATGATCATTACGAATATCTCTCCCTCTCGTTATCTCACTACCCAAATATTGAACAATTTCTGGACAGTCCTTGAACTGTTTCAATACTTGTTCTTCCCACAACAATGAAGAATTATGTTGAAGAGGAGAAAGTTTGACAGCAAAATAGTAGGGAAGATTATTATCAGATTTTTTTCTAATGGCCGATGATTGTTTTGCTAAGCAAACTACCGCATAAGAACCTTGACCTAAGACCTTTACTGGAACCCAATTCTCCATTACTGGGACGCGAGGGCTTTGAAGAAGTATGA

mRNA sequence

CTTGGTTTTTGATTGTTGAGGGAGTGAAAAGAAATATTGCTCGACTATAGGTTAAAACAAGTTAAAAACAATTTTGCTATGGAGAATTTTAAAATCAATTTATTGAAACAACATGAGGCGTCCACTGTAGCTTCATCATCCTTCTGCATTGTAGCTTCATTATCTTTCTTCATTGTAGCTTCATTCTTGTTGTTCATTGGAGCTTCATTTTCTTCATTGAGATAAGGATGTTGGAGTAGCATTTCAGCCGTCCACCGTTCTTTATAATTTCGAATAAAGCATTTTTTAATGAAGTCCTTACCTTGTTCGGATAACTCCCCAGGTATTGTTGGCATAATCTTGTTATCCAAAAGTTTTATCATCAATTGTTTAGAATCTTTACAATCATCCCACGCAGACTTTCCAGAAATCATTTTAACCAAAATGCAACCCAACGACCAAATATCGTCCGCGTCATTGACTTCGTTGAATACCACGGATTCAGGTGACATATATCTAGGTGTTCCTTTAAACTTGAACGAACTGCAACACGGCGGGTACTGTTTATGTTGATCATCAACCCTATACTTTGATCTCTCTGCTTGTCCAAAGTCAGCAATTTTTAACTTCATCTTACCATCACTTTGAGGGAATGCAAGAATGTTGTTAGGCTTAAGATCAACGTGAACAAATCCCTTACTATGAATACAAGAGAGACCTTTAAGTATCATTCGAAGATAATCTTTCACCTCAGCTTCAGGTAACTTGTCTCTTTGTTCGATCAAGTCATCCAAAGTCCCTCCCGCAGCATACTCCAACTTCAGAGTGTAAAAATCCACATGATCATTACGAATATCTCTCCCTCTCGTTATCTCACTACCCAAATATTGAACAATTTCTGGACAGTCCTTGAACTGTTTCAATACTTGTTCTTCCCACAACAATGAAGAATTATGTTGAAGAGGAGAAAGTTTGACAGCAAAATAGTAGGGAAGATTATTATCAGATTTTTTTCTAATGGCCGATGATTGTTTTGCTAAGCAAACTACCGCATAAGAACCTTGACCTAAGACCTTTACTGGAACCCAATTCTCCATTACTGGGACGCGAGGGCTTTGAAGAAGTATGA

Coding sequence (CDS)

ATGAAGTCCTTACCTTGTTCGGATAACTCCCCAGGTATTGTTGGCATAATCTTGTTATCCAAAAGTTTTATCATCAATTGTTTAGAATCTTTACAATCATCCCACGCAGACTTTCCAGAAATCATTTTAACCAAAATGCAACCCAACGACCAAATATCGTCCGCGTCATTGACTTCGTTGAATACCACGGATTCAGGTGACATATATCTAGGTGTTCCTTTAAACTTGAACGAACTGCAACACGGCGGGTACTGTTTATGTTGA

Protein sequence

MKSLPCSDNSPGIVGIILLSKSFIINCLESLQSSHADFPEIILTKMQPNDQISSASLTSLNTTDSGDIYLGVPLNLNELQHGGYCLC
Homology
[Close]
BLAST of Cmc01g0027121 vs. NCBI nr
Match: POO02816.1 (hypothetical protein TorRG33x02_018020, partial [Trema orientale])

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = 0 

Query: 2  KSLPCSDNSPGIVGII---LLSKSFIINCLESLQSSHADFPEIILTKMQPNDQISSASLT 61
          KSLP SDNS GI G     + +KSF I    S +   A FP  I T   P  QIS     
Sbjct: 23 KSLPSSDNSSGIPGSSSPPIRTKSFQIFDSAS-RLFQAGFPVAISTTAHPRAQISQGGSY 82

Query: 62 SLNTTDSGDIYLGVPLN 76
          SL+ TDSGDIY GVPLN
Sbjct: 83 SLSFTDSGDIYKGVPLN 98

[Close]
BLAST of Cmc01g0027121 vs. ExPASy TrEMBL
Match: A0A2P5FYE7 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_018020 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 39/77 (50.65%), Postives = 43/77 (55.84%), Query Frame = 0 

Query: 2  KSLPCSDNSPGIVGII---LLSKSFIINCLESLQSSHADFPEIILTKMQPNDQISSASLT 61
          KSLP SDNS GI G     + +KSF I    S +   A FP  I T   P  QIS     
Sbjct: 23 KSLPSSDNSSGIPGSSSPPIRTKSFQIFDSAS-RLFQAGFPVAISTTAHPRAQISQGGSY 82

Query: 62 SLNTTDSGDIYLGVPLN 76
          SL+ TDSGDIY GVPLN
Sbjct: 83 SLSFTDSGDIYKGVPLN 98

The following BLAST results are available for this feature:
BLAST of Cmc01g0027121 vs. NCBI nr
Match NameE-valueIdentityDescription
POO02816.12.7e-0450.65hypothetical protein TorRG33x02_018020, partial [Trema orientale][more]
BLAST of Cmc01g0027121 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc01g0027121 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5FYE71.3e-0450.65Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_018... [more]
BLAST of Cmc01g0027121 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc01g0027121.1Cmc01g0027121.1mRNA