Cmc01g0026891 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0026891
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr01: 27953929 .. 27955149 (-)
RNA-Seq Expression	Cmc01g0026891
Synteny	Cmc01g0026891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCAGCTAAAGCAGTGGGAGACTTGAAGTTATTTTTTAATGATAGATATATCATGCTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTAATATCTATCTCTTGTATGTTAGAACATATGTACAAAATTAATGAAGCGTTCATTTTCCGAAAAGGTATTCATGTTTGTTCTGCTATACTTGAAGACAACTTATATAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTAAAATGTTTAGAACAGCTGATACTCAGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGCACTTAAGTTTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACTTCCATGTGATTCCTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGGTCTTAGAGCCAAAACATCTTTAGAGCTCGTACATTTGGACTTTTGTGGACCAATGAATGTCAAAGCTCGGGGAGAATATGAATATTTCATTAGTTTTATTAATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATCAGGTAAAACAATCAAGACACTTCGATCAGATCGAGGTGGAGAGTATCCAAGACTATTTGATAGACATGGAATCCAATCACAACGCTGTGCACCTAGTACGCCTCAGCAAAACGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCCCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAATAGCTATCTATATTTTAAACAACGTTCCCTCTAAAAGTGTTTCTGAAACACCTTATGAGATATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAACTCTAAAAAGTTGAAACGTCGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATAACCCTCAAAAAAATAAAGTATTTGTGTCGACAAATGCTACGTTCTTAGAGCAAGACCACATAAGAAATTATCAAACTCACAATAAACTAGTATTAGAAGAAATTTCCAAAAAAACTACAGATAGACCGTTCATCCACTAA

mRNA sequence

ATGGTCTCAGCTAAAGCAGTGGGAGACTTGAAGTTATTTTTTAATGATAGATATATCATGCTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTAATATCTATCTCTTGTATGTTAGAACATATGTACAAAATTAATGAAGCGTTCATTTTCCGAAAAGGTATTCATGTTTGTTCTGCTATACTTGAAGACAACTTATATAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTAAAATGTTTAGAACAGCTGATACTCAGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGCACTTAAGTTTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACTTCCATGTGATTCCTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGGTCTTAGAGCCAAAACATCTTTAGAGCTCGTACATTTGGACTTTTGTGGACCAATGAATGTCAAAGCTCGGGGAGAATATGAATATTTCATTAGTTTTATTAATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATCAGGTAAAACAATCAAGACACTTCGATCAGATCGAGGTGGAGAGTATCCAAGACTATTTGATAGACATGGAATCCAATCACAACGCTGTGCACCTAGTACGCCTCAGCAAAACGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCCCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAATAGCTATCTATATTTTAAACAACGTTCCCTCTAAAAGTGTTTCTGAAACACCTTATGAGATATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAACTCTAAAAAGTTGAAACGTCGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATAACCCTCAAAAAAATAAAGTATTTGTGTCGACAAATGCTACGTTCTTAGAGCAAGACCACATAAGAAATTATCAAACTCACAATAAACTAGTATTAGAAGAAATTTCCAAAAAAACTACAGATAGACCGTTCATCCACTAA

Coding sequence (CDS)

ATGGTCTCAGCTAAAGCAGTGGGAGACTTGAAGTTATTTTTTAATGATAGATATATCATGCTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGAAATTTAATATCTATCTCTTGTATGTTAGAACATATGTACAAAATTAATGAAGCGTTCATTTTCCGAAAAGGTATTCATGTTTGTTCTGCTATACTTGAAGACAACTTATATAAGTTAAGACCAACACGAGCAAATTTTGTCTTAAATACTAAAATGTTTAGAACAGCTGATACTCAGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGCACTTAAGTTTTGGTCACATAAATCTCAATAGGATTGGGAGATTGGTTAAGAATGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACTTCCATGTGATTCCTGTCTTGAAGGAAAAATGACCAAAAGATCTTTTACTAGAAAAGGTCTTAGAGCCAAAACATCTTTAGAGCTCGTACATTTGGACTTTTGTGGACCAATGAATGTCAAAGCTCGGGGAGAATATGAATATTTCATTAGTTTTATTAATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTAATTCTTTTGAAAAGTTCAAAGAATATAAGGCTGAAGTTGAAAATGAATCAGGTAAAACAATCAAGACACTTCGATCAGATCGAGGTGGAGAGTATCCAAGACTATTTGATAGACATGGAATCCAATCACAACGCTGTGCACCTAGTACGCCTCAGCAAAACGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCCCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAATAGCTATCTATATTTTAAACAACGTTCCCTCTAAAAGTGTTTCTGAAACACCTTATGAGATATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAACTCTAAAAAGTTGAAACGTCGTTCAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATAACCCTCAAAAAAATAAAGTATTTGTGTCGACAAATGCTACGTTCTTAGAGCAAGACCACATAAGAAATTATCAAACTCACAATAAACTAGTATTAGAAGAAATTTCCAAAAAAACTACAGATAGACCGTTCATCCACTAA

Protein sequence

MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKINEAFIFRKGIHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVKARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYPRLFDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVGYPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTTDRPFIH

Homology

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BLAST of Cmc01g0026891 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 646.0 bits (1665), Expect = 2.2e-181
Identity = 319/412 (77.43%), Postives = 358/412 (86.89%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMY----KINEAFIFRKG 60
           +VSA+AVGDL LFF DRY++LK+VLY P MKRNLISI+C+LEH+Y    ++NE FI  KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRI 120
           I +CSAI E+NLYKLRPTRAN VLNT+MFRT +TQNK+QKVSSNA+LWHL  GHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVKAR 180
            RLVK+G+L+QLEDNSL PC+SCLEGKMTKRSFT KGLRAK  LELVH D CGPMNVKAR
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 GEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY-- 240
           G YEYFISFI+D+SRYGHVYL+ +KS SFEKFKEYKAEVENE GKTIKTLRSDRGGEY  
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 ---PRLFDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIA 300
                     GIQSQ  APSTPQQNGVSERRNRTLLDMV SMMS+AQLPDSFWGYALE A
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVGYP 360
           I+ILNNVPSKSV ETPYE+WKGRK SLR+FRIWGCPAHVLVQN KKL+ RSKLCLFVGYP
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYP 697

Query: 361 KESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTTDRP 404
           KES+GGLFY+PQ+NKVFVSTNATFLE+DH RN+Q  +K+VL+E+ K  TD+P
Sbjct: 698 KESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKP 749

[Close]

BLAST of Cmc01g0026891 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 578.9 bits (1491), Expect = 3.3e-161
Identity = 279/411 (67.88%), Postives = 342/411 (83.21%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKI----NEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I    NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVS--SNAFLWHLSFGHINLN 120
           +H+CSA LE+NLY LRP  A  VLN +MFRTA+TQNKRQ++S  +N +LWHL  GHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RIGRLVKNGLL++L+D SL PC+SCLEGKMTKR FT KG RAK  LEL+H D CGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           ARG +EYFISFI+DYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 PRL-----FDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L        HGIQSQ  AP TPQQNGVSERRNRTLLDMV SMMS+AQLP SFWGYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A++ILNNVPSKSVSETP+E+W+GRK SL HFRIWGCPAHVLV N KKL+ RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTT 401
           YPKE++GGLF++PQ+N+VFVSTNATFLE+DH+RN++  +KLVL E + ++T
Sbjct: 602 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

[Close]

BLAST of Cmc01g0026891 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 575.1 bits (1481), Expect = 4.8e-160
Identity = 276/411 (67.15%), Postives = 342/411 (83.21%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKI----NEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I    NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVS--SNAFLWHLSFGHINLN 120
           +H+CSA LE+NLY LRP  A  VLN +MFRTA+TQNKRQ++S  +N +LWHL  GHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RIGRLVK+GLL++L+D SL PC+SCLEGKMTKR FT KG RAK  LEL+H D CGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           ARG +EYFISFI+DYSRYG++YL+++KS + EKFKEYK EVEN   K IK  RSDRGGEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 PRLFDR-----HGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L  +     HGIQSQ  AP TPQQNGVSERRNRTLLDMV SMMS+AQLP SFWGYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A++ILNNVPSKSVSETP+E+W+GRK SL HFRIWGCPAHVLV N KKL+ RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTT 401
           YPKE++GGLF++P++N+VFVSTNATFLE+DH+RN++  +KLVL E + ++T
Sbjct: 602 YPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

[Close]

BLAST of Cmc01g0026891 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 560.8 bits (1444), Expect = 9.4e-156
Identity = 271/411 (65.94%), Postives = 332/411 (80.78%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKI----NEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I    NEAFI + G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSS--NAFLWHLSFGHINLN 120
           +H+CS  LEDNLY L+P     VLN +MFRTA+TQNKRQ++SS  N +LWHL  GHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RIGRLVKNGLL++LED+SL PC+SCLEGKMTKR FT KG RAK  LEL+H D CGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           A G +EYFISFI+DYS YG++YLI++KS + EKFKEYK EVEN   K IK LRSDRGGEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 PRL-----FDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L        HGIQSQ  AP TPQQNGVSERRNRTLLDMV SMMS+ QLP SFWGYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A++ILNNVPSK+V ETP+E+W+GRK SL HFRIW CP HVLV N KKL+ RS+LC FVG
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEPRSRLCQFVG 573

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTT 401
           YPKE++GGLF++PQ+N+VFVSTNATF E+DH+R+++   KLVL E + ++T
Sbjct: 574 YPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDEST 624

[Close]

BLAST of Cmc01g0026891 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 548.5 bits (1412), Expect = 4.8e-152
Identity = 275/412 (66.75%), Postives = 327/412 (79.37%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMY----KINEAFIFRKG 60
           +VSA AVG L+L     +++L+NV   P +KRNLIS+ C+LE  Y     +N+ FI++ G
Sbjct: 344 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 403

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVS--SNAFLWHLSFGHINLN 120
           + +CSA LE+NLY LR   +  +LNT+MF+TA TQNKR K+S   NA LWHL  GHINLN
Sbjct: 404 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 463

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RI RLVKNGLLS+LE+NSL  C+SCLEGKMTKR FT KG RAK  LELVH D CGPMNVK
Sbjct: 464 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 523

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           ARG +EYFI+F +DYSRYG+VYL+Q+KS + EKFKEYKAEVEN   KTIKT RSDRGGEY
Sbjct: 524 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 583

Query: 241 PRL-FDRH----GIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L F  +    GI SQ  AP TPQQNGVSERRNRTLLDMV SMMS+A LP+SFWGYA++
Sbjct: 584 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 643

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A+YILN VPSKSVSETP ++W GRKGSLRHFRIWGCPAHVL  N KKL+ RSKLCLFVG
Sbjct: 644 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVG 703

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTTD 402
           YPK ++GG FY+P+ NKVFVSTNATFLE+DHIR ++  +K+VL E+SK+TT+
Sbjct: 704 YPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTE 755

[Close]

BLAST of Cmc01g0026891 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.7e-57
Identity = 130/373 (34.85%), Postives = 205/373 (54.96%), Query Frame = 0


Query: 19  IMLKNVLYAPQMKRNLISISCMLEHMYK---INEAFIFRKG-IHVCSAILEDNLYKLRPT 78
           ++LK+V + P ++ NLIS   +    Y+    N+ +   KG + +   +    LY+    
Sbjct: 348 LVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE 407

Query: 79  RANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRIGRLVKNGLLSQLEDNSLL 138
                LN            + ++S +  LWH   GH++   +  L K  L+S  +  ++ 
Sbjct: 408 ICQGELNA----------AQDEISVD--LWHKRMGHMSEKGLQILAKKSLISYAKGTTVK 467

Query: 139 PCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVKARGEYEYFISFINDYSRYGH 198
           PCD CL GK  + SF     R    L+LV+ D CGPM +++ G  +YF++FI+D SR   
Sbjct: 468 PCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLW 527

Query: 199 VYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY-PRLFDR----HGIQSQRCA 258
           VY+++ K   F+ F+++ A VE E+G+ +K LRSD GGEY  R F+     HGI+ ++  
Sbjct: 528 VYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTV 587

Query: 259 PSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIAIYILNNVPSKSVS-ETPY 318
           P TPQ NGV+ER NRT+++ V SM+  A+LP SFWG A++ A Y++N  PS  ++ E P 
Sbjct: 588 PGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPE 647

Query: 319 EIWKGRKGSLRHFRIWGCP--AHVLVQNSKKLKRRSKLCLFVGYPKESKGGLFYNPQKNK 378
            +W  ++ S  H +++GC   AHV  +   KL  +S  C+F+GY  E  G   ++P K K
Sbjct: 648 RVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKK 707

Query: 379 VFVSTNATFLEQD 380
           V  S +  F E +
Sbjct: 708 VIRSRDVVFRESE 708

[Close]

BLAST of Cmc01g0026891 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-39
Identity = 119/411 (28.95%), Postives = 200/411 (48.66%), Query Frame = 0


Query: 15  NDRYIMLKNVLYAPQMKRNLISISCMLEHMYKINEAFIFRKGIHVCSAILEDNLYKLRPT 74
           ND  I L++VL+  +   NL+S+  + E    I      + G+ +       +   L   
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIE---FDKSGVTI-------SKNGLMVV 398

Query: 75  RANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRIGRLVKNGLLSQLEDNSLL 134
           + + +LN          +   K  +N  LWH  FGHI+  ++  + +  + S   D SLL
Sbjct: 399 KNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFS---DQSLL 458

Query: 135 P--------CDSCLEGKMTKRSFTRKGLRAKTSLE----LVHLDFCGPMNVKARGEYEYF 194
                    C+ CL GK  +  F  K L+ KT ++    +VH D CGP+      +  YF
Sbjct: 459 NNLELSCEICEPCLNGKQARLPF--KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYF 518

Query: 195 ISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY-----PRL 254
           + F++ ++ Y   YLI+ KS+ F  F+++ A+ E      +  L  D G EY      + 
Sbjct: 519 VIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQF 578

Query: 255 FDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIAIYILNN 314
             + GI      P TPQ NGVSER  RT+ +   +M+S A+L  SFWG A+  A Y++N 
Sbjct: 579 CVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINR 638

Query: 315 VPSKSV---SETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSK-KLKRRSKLCLFVGYPKE 374
           +PS+++   S+TPYE+W  +K  L+H R++G   +V ++N + K   +S   +FVGY  E
Sbjct: 639 IPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGY--E 698

Query: 375 SKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTTDRPF 405
             G   ++    K  V+ +    E + + +     + V  + SK++ ++ F
Sbjct: 699 PNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNF 732

[Close]

BLAST of Cmc01g0026891 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.5e-36
Identity = 100/384 (26.04%), Postives = 182/384 (47.40%), Query Frame = 0


Query: 8   GDLKLFFNDRYIMLKNVLYAPQMKRNLISI-------SCMLEHMYKINEAFIFRKGIHVC 67
           G   L    R + L N+LY P + +NLIS+          +E      +      G+ + 
Sbjct: 374 GSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLL 433

Query: 68  SAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRIGRLV 127
               +D LY+     +  V    +F +  ++            WH   GH   + +  ++
Sbjct: 434 QGKTKDELYEWPIASSQPV---SLFASPSSKATHSS-------WHARLGHPAPSILNSVI 493

Query: 128 KNGLLSQLE-DNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVKARGEY 187
            N  LS L   +  L C  CL  K  K  F++  + +   LE ++ D      + +   Y
Sbjct: 494 SNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNY 553

Query: 188 EYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYPRL-- 247
            Y++ F++ ++RY  +Y ++ KS   E F  +K  +EN     I T  SD GGE+  L  
Sbjct: 554 RYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALWE 613

Query: 248 -FDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIAIYILN 307
            F +HGI      P TP+ NG+SER++R +++   +++S A +P ++W YA  +A+Y++N
Sbjct: 614 YFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLIN 673

Query: 308 NVPSKSVS-ETPYEIWKGRKGSLRHFRIWGCPAHVLVQ--NSKKLKRRSKLCLFVGYPKE 367
            +P+  +  E+P++   G   +    R++GC  +  ++  N  KL  +S+ C+F+GY   
Sbjct: 674 RLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLT 733

Query: 368 SKGGLFYNPQKNKVFVSTNATFLE 378
               L  + Q +++++S +  F E
Sbjct: 734 QSAYLCLHLQTSRLYISRHVRFDE 746

[Close]

BLAST of Cmc01g0026891 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.5e-35
Identity = 102/386 (26.42%), Postives = 186/386 (48.19%), Query Frame = 0


Query: 8   GDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKINEAFI--------FRKGIHV 67
           G   L  + R + L  VLY P + +NLIS+   L +  +++  F            G+ +
Sbjct: 353 GSASLPTSSRSLDLNKVLYVPNIHKNLISV-YRLCNTNRVSVEFFPASFQVKDLNTGVPL 412

Query: 68  CSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRIGRL 127
                +D LY+     +  V    MF +  ++            WH   GH +L  +  +
Sbjct: 413 LQGKTKDELYEWPIASSQAV---SMFASPCSKATHSS-------WHSRLGHPSLAILNSV 472

Query: 128 VKNGLLSQLE-DNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVKARGE 187
           + N  L  L   + LL C  C   K  K  F+   + +   LE ++ D      + +   
Sbjct: 473 ISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDN 532

Query: 188 YEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYPRLF 247
           Y Y++ F++ ++RY  +Y ++ KS   + F  +K+ VEN     I TL SD GGE+  L 
Sbjct: 533 YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR 592

Query: 248 D---RHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIAIYIL 307
           D   +HGI      P TP+ NG+SER++R +++M  +++S A +P ++W YA  +A+Y++
Sbjct: 593 DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLI 652

Query: 308 NNVPSKSVS-ETPYEIWKGRKGSLRHFRIWGCPAHVLVQ--NSKKLKRRSKLCLFVGYPK 367
           N +P+  +  ++P++   G+  +    +++GC  +  ++  N  KL+ +SK C F+GY  
Sbjct: 653 NRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSL 712

Query: 368 ESKGGLFYNPQKNKVFVSTNATFLEQ 379
                L  +    +++ S +  F E+
Sbjct: 713 TQSAYLCLHIPTGRLYTSRHVQFDER 726

[Close]

BLAST of Cmc01g0026891 vs. ExPASy Swiss-Prot
Match: Q12337 (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-17
Identity = 82/322 (25.47%), Postives = 138/322 (42.86%), Query Frame = 0


Query: 87  TADTQNKRQKVSSNAF-LWHLSFGHINLNRIGRLVKNGLLSQLEDN-------SLLPCDS 146
           T +  NK + V+   + L H   GH N   I + +K   ++ L+++       S   C  
Sbjct: 576 TINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPD 635

Query: 147 CLEGKMTKRSFTRKGLRAK-----TSLELVHLDFCGPMNVKARGEYEYFISFINDYSRYG 206
           CL GK TK     KG R K        + +H D  GP++   +    YFISF ++ +R+ 
Sbjct: 636 CLIGKSTKHRHV-KGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 695

Query: 207 HVYLIQNK--SNSFEKFKEYKAEVENESGKTIKTLRSDRGGEYP-----RLFDRHGIQSQ 266
            VY + ++   +    F    A ++N+    +  ++ DRG EY      + F   GI + 
Sbjct: 696 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 755

Query: 267 RCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIAIYILNNVPSKSVSET 326
               +  + +GV+ER NRTLL+   +++  + LP+  W  A+E +  I N++ S      
Sbjct: 756 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSP----- 815

Query: 327 PYEIWKGRKGSLRHFRIWGCP--------AHVLVQN---SKKLKRRSKLCLFVGYPKESK 378
                K RK + +H  + G            V+V N     K+  R      +   + S 
Sbjct: 816 -----KKRKSARQHAGLAGLDITTILPFGQPVIVNNHNPDSKIHPRGIPGYALHPSRNSY 875

[Close]

BLAST of Cmc01g0026891 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 1.1e-181
Identity = 319/412 (77.43%), Postives = 358/412 (86.89%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMY----KINEAFIFRKG 60
           +VSA+AVGDL LFF DRY++LK+VLY P MKRNLISI+C+LEH+Y    ++NE FI  KG
Sbjct: 338 VVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKG 397

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSSNAFLWHLSFGHINLNRI 120
           I +CSAI E+NLYKLRPTRAN VLNT+MFRT +TQNK+QKVSSNA+LWHL  GHINLNRI
Sbjct: 398 IQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRI 457

Query: 121 GRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVKAR 180
            RLVK+G+L+QLEDNSL PC+SCLEGKMTKRSFT KGLRAK  LELVH D CGPMNVKAR
Sbjct: 458 ERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKAR 517

Query: 181 GEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY-- 240
           G YEYFISFI+D+SRYGHVYL+ +KS SFEKFKEYKAEVENE GKTIKTLRSDRGGEY  
Sbjct: 518 GGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMD 577

Query: 241 ---PRLFDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALEIA 300
                     GIQSQ  APSTPQQNGVSERRNRTLLDMV SMMS+AQLPDSFWGYALE A
Sbjct: 578 SKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETA 637

Query: 301 IYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVGYP 360
           I+ILNNVPSKSV ETPYE+WKGRK SLR+FRIWGCPAHVLVQN KKL+ RSKLCLFVGYP
Sbjct: 638 IHILNNVPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYP 697

Query: 361 KESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTTDRP 404
           KES+GGLFY+PQ+NKVFVSTNATFLE+DH RN+Q  +K+VL+E+ K  TD+P
Sbjct: 698 KESRGGLFYHPQENKVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATDKP 749

[Close]

BLAST of Cmc01g0026891 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.6e-161
Identity = 279/411 (67.88%), Postives = 342/411 (83.21%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKI----NEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I    NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVS--SNAFLWHLSFGHINLN 120
           +H+CSA LE+NLY LRP  A  VLN +MFRTA+TQNKRQ++S  +N +LWHL  GHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RIGRLVKNGLL++L+D SL PC+SCLEGKMTKR FT KG RAK  LEL+H D CGPMNVK
Sbjct: 362 RIGRLVKNGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           ARG +EYFISFI+DYSRYG++YL+++KS + EKFKEYK EVEN   K IK LRSDRGGEY
Sbjct: 422 ARGGFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 481

Query: 241 PRL-----FDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L        HGIQSQ  AP TPQQNGVSERRNRTLLDMV SMMS+AQLP SFWGYA+E
Sbjct: 482 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A++ILNNVPSKSVSETP+E+W+GRK SL HFRIWGCPAHVLV N KKL+ RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTT 401
           YPKE++GGLF++PQ+N+VFVSTNATFLE+DH+RN++  +KLVL E + ++T
Sbjct: 602 YPKETRGGLFFDPQENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

[Close]

BLAST of Cmc01g0026891 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 2.3e-160
Identity = 276/411 (67.15%), Postives = 342/411 (83.21%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKI----NEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I    NEAFI++ G
Sbjct: 242 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEAFIYKNG 301

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVS--SNAFLWHLSFGHINLN 120
           +H+CSA LE+NLY LRP  A  VLN +MFRTA+TQNKRQ++S  +N +LWHL  GHINL+
Sbjct: 302 VHICSAKLENNLYVLRPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHINLD 361

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RIGRLVK+GLL++L+D SL PC+SCLEGKMTKR FT KG RAK  LEL+H D CGPMNVK
Sbjct: 362 RIGRLVKDGLLNKLKDVSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 421

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           ARG +EYFISFI+DYSRYG++YL+++KS + EKFKEYK EVEN   K IK  RSDRGGEY
Sbjct: 422 ARGSFEYFISFIDDYSRYGYLYLMEHKSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEY 481

Query: 241 PRLFDR-----HGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L  +     HGIQSQ  AP TPQQNGVSERRNRTLLDMV SMMS+AQLP SFWGYA+E
Sbjct: 482 MDLIFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAQLPSSFWGYAVE 541

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A++ILNNVPSKSVSETP+E+W+GRK SL HFRIWGCPAHVLV N KKL+ RS+LC FVG
Sbjct: 542 TAVHILNNVPSKSVSETPFELWRGRKPSLSHFRIWGCPAHVLVTNPKKLEPRSRLCQFVG 601

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTT 401
           YPKE++GGLF++P++N+VFVSTNATFLE+DH+RN++  +KLVL E + ++T
Sbjct: 602 YPKETRGGLFFDPKENRVFVSTNATFLEEDHMRNHKPRSKLVLSEATDEST 652

[Close]

BLAST of Cmc01g0026891 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 4.5e-156
Identity = 271/411 (65.94%), Postives = 332/411 (80.78%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMYKI----NEAFIFRKG 60
           ++SA+AVGD KLFF ++++ L+N+   P++KRNL+S+SC++EHMY I    NEAFI + G
Sbjct: 214 VISARAVGDAKLFFGNKFMFLENLYIVPKIKRNLVSVSCLIEHMYSISFSMNEAFISKNG 273

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVSS--NAFLWHLSFGHINLN 120
           +H+CS  LEDNLY L+P     VLN +MFRTA+TQNKRQ++SS  N +LWHL  GHINL+
Sbjct: 274 VHICSVKLEDNLYVLKPNEGKAVLNHEMFRTANTQNKRQRISSNNNTYLWHLRLGHINLD 333

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RIGRLVKNGLL++LED+SL PC+SCLEGKMTKR FT KG RAK  LEL+H D CGPMNVK
Sbjct: 334 RIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVK 393

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           A G +EYFISFI+DYS YG++YLI++KS + EKFKEYK EVEN   K IK LRSDRGGEY
Sbjct: 394 AIGGFEYFISFIDDYSMYGYLYLIEHKSEALEKFKEYKTEVENLLSKKIKILRSDRGGEY 453

Query: 241 PRL-----FDRHGIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L        HGIQSQ  AP TPQQNGVSERRNRTLLDMV SMMS+ QLP SFWGYA+E
Sbjct: 454 MDLRFQDYMIEHGIQSQLSAPGTPQQNGVSERRNRTLLDMVHSMMSYVQLPSSFWGYAVE 513

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A++ILNNVPSK+V ETP+E+W+GRK SL HFRIW CP HVLV N KKL+ RS+LC FVG
Sbjct: 514 TAVHILNNVPSKNVFETPFELWRGRKPSLSHFRIWVCPVHVLVTNPKKLEPRSRLCQFVG 573

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTT 401
           YPKE++GGLF++PQ+N+VFVSTNATF E+DH+R+++   KLVL E + ++T
Sbjct: 574 YPKETRGGLFFDPQENRVFVSTNATFFEEDHMRDHKPRRKLVLSEATDEST 624

[Close]

BLAST of Cmc01g0026891 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 2.3e-152
Identity = 275/412 (66.75%), Postives = 327/412 (79.37%), Query Frame = 0


Query: 1   MVSAKAVGDLKLFFNDRYIMLKNVLYAPQMKRNLISISCMLEHMY----KINEAFIFRKG 60
           +VSA AVG L+L     +++L+NV   P +KRNLIS+ C+LE  Y     +N+ FI++ G
Sbjct: 345 VVSAIAVGGLRLCLQKSFLLLENVYVVPDLKRNLISVKCLLEQSYSLTFNVNKVFIYKNG 404

Query: 61  IHVCSAILEDNLYKLRPTRANFVLNTKMFRTADTQNKRQKVS--SNAFLWHLSFGHINLN 120
           + +CSA LE+NLY LR   +  +LNT+MF+TA TQNKR K+S   NA LWHL  GHINLN
Sbjct: 405 VEICSAKLENNLYVLRSLTSKALLNTEMFKTAITQNKRLKISPKENAHLWHLRLGHINLN 464

Query: 121 RIGRLVKNGLLSQLEDNSLLPCDSCLEGKMTKRSFTRKGLRAKTSLELVHLDFCGPMNVK 180
           RI RLVKNGLLS+LE+NSL  C+SCLEGKMTKR FT KG RAK  LELVH D CGPMNVK
Sbjct: 465 RIERLVKNGLLSELEENSLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNVK 524

Query: 181 ARGEYEYFISFINDYSRYGHVYLIQNKSNSFEKFKEYKAEVENESGKTIKTLRSDRGGEY 240
           ARG +EYFI+F +DYSRYG+VYL+Q+KS + EKFKEYKAEVEN   KTIKT RSDRGGEY
Sbjct: 525 ARGGFEYFITFTDDYSRYGYVYLMQHKSEALEKFKEYKAEVENALSKTIKTFRSDRGGEY 584

Query: 241 PRL-FDRH----GIQSQRCAPSTPQQNGVSERRNRTLLDMVPSMMSFAQLPDSFWGYALE 300
             L F  +    GI SQ  AP TPQQNGVSERRNRTLLDMV SMMS+A LP+SFWGYA++
Sbjct: 585 MDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQ 644

Query: 301 IAIYILNNVPSKSVSETPYEIWKGRKGSLRHFRIWGCPAHVLVQNSKKLKRRSKLCLFVG 360
            A+YILN VPSKSVSETP ++W GRKGSLRHFRIWGCPAHVL  N KKL+ RSKLCLFVG
Sbjct: 645 TAVYILNCVPSKSVSETPLKLWNGRKGSLRHFRIWGCPAHVLENNPKKLEPRSKLCLFVG 704

Query: 361 YPKESKGGLFYNPQKNKVFVSTNATFLEQDHIRNYQTHNKLVLEEISKKTTD 402
           YPK ++GG FY+P+ NKVFVSTNATFLE+DHIR ++  +K+VL E+SK+TT+
Sbjct: 705 YPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIREHKPRSKIVLNELSKETTE 756

[Close]

BLAST of Cmc01g0026891 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 5.0e-06
Identity = 27/82 (32.93%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 263 NRTLLDMVPSMMSFAQLPDSFWGYALEIAIYILNNVPSKSVS-ETPYEIWKGRKGSLRHF 322
           NRT+++ V SM+    LP +F   A   A++I+N  PS +++   P E+W     +  + 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 323 RIWGCPAHVLVQNSKKLKRRSK 344
           R +GC A++      KLK R+K
Sbjct: 62  RRFGCVAYIHCDEG-KLKPRAK 82

The following BLAST results are available for this feature:

BLAST of Cmc01g0026891 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	2.2e-181	77.43	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	3.3e-161	67.88	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	4.8e-160	67.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060534.1	9.4e-156	65.94	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0048404.1	4.8e-152	66.75	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0026891 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.7e-57	34.85	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.0e-39	28.95	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.5e-36	26.04	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	8.5e-35	26.42	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q12337	2.8e-17	25.47	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc01g0026891 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	1.1e-181	77.43	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	1.6e-161	67.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T2V9	2.3e-160	67.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5D3BNE1	4.5e-156	65.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7SMH8	2.3e-152	66.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of Cmc01g0026891 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	5.0e-06	32.93	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 153..341 e-value: 2.6E-33 score: 117.0
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 93..144 e-value: 2.5E-10 score: 40.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 16..388
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 155..315 score: 17.330349
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 155..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0026891.1	Cmc01g0026891.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding