Cmc01g0026831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0026831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr01: 27936657 .. 27937160 (+)
RNA-Seq Expression	Cmc01g0026831
Synteny	Cmc01g0026831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATTCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCTGACTCCACTATGGAAGCTGAATTTATAGTTGCCTGTGAAGCAGCCAAAGAAGCAGTATGGCTTAAAAAATTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTCACGAGAACCTAGAAGCCATAAACGAGGAAAGCATATTGAACGAAAGTACCATTTGATCAGGGAGATCATACATCGAGGAGACGTTATAGTAACAAAAATCTCCTCCGAGCAAAACATAGCTGATCCATTTACAAAAGCTCTCACGGCTAAAGTGTGTGAGAGCCACCTGCATGGTTTAAGTCTACGCAGTTTGTAA

mRNA sequence

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATTCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCTGACTCCACTATGGAAGCTGAATTTATAGTTGCCTGTGAAGCAGCCAAAGAAGCAGTATGGCTTAAAAAATTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTCACGAGAACCTAGAAGCCATAAACGAGGAAAGCATATTGAACGAAAGTACCATTTGATCAGGGAGATCATACATCGAGGAGACGTTATAGTAACAAAAATCTCCTCCGAGCAAAACATAGCTGATCCATTTACAAAAGCTCTCACGGCTAAAGTGTGTGAGAGCCACCTGCATGGTTTAAGTCTACGCAGTTTGTAA

Coding sequence (CDS)

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATTCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCTGACTCCACTATGGAAGCTGAATTTATAGTTGCCTGTGAAGCAGCCAAAGAAGCAGTATGGCTTAAAAAATTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAATAGTGGTGCAGTTGCAAATTCACGAGAACCTAGAAGCCATAAACGAGGAAAGCATATTGAACGAAAGTACCATTTGATCAGGGAGATCATACATCGAGGAGACGTTATAGTAACAAAAATCTCCTCCGAGCAAAACATAGCTGATCCATTTACAAAAGCTCTCACGGCTAAAGTGTGTGAGAGCCACCTGCATGGTTTAAGTCTACGCAGTTTGTAA

Protein sequence

MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL

Homology

[Close]

BLAST of Cmc01g0026831 vs. NCBI nr
Match: KAA0059674.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK26113.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 5.5e-86
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWR+IKQSCIADSTMEAEF
Sbjct: 356 MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQSCIADSTMEAEF 415

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH
Sbjct: 416 IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 475

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREIIHRGDVIVTKISSEQNIADPFTKALTAKV ESHLHGL LRSL
Sbjct: 476 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVFESHLHGLGLRSL 522

[Close]

BLAST of Cmc01g0026831 vs. NCBI nr
Match: KAA0041899.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK17833.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 151/167 (90.42%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGS+FTLNGGAV+WRSIKQSCIA+STMEAE+
Sbjct: 293 MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNGGAVIWRSIKQSCIANSTMEAEY 352

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           +  CEAAKEAVWLKKF TDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH
Sbjct: 353 VATCEAAKEAVWLKKFSTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 412

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREI+HRGDVIVTKIS EQN+ADPFTKALTAKV ES LHGL LR L
Sbjct: 413 LIREIVHRGDVIVTKISFEQNVADPFTKALTAKVFESDLHGLGLRGL 459

[Close]

BLAST of Cmc01g0026831 vs. NCBI nr
Match: KAA0051190.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 303.9 bits (777), Expect = 8.5e-79
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           M VYGSKDLILTGYT+SDFQTDKD+RKST GSVFTLNGGAVVWRSIKQSCI DSTMEAE+
Sbjct: 60  MFVYGSKDLILTGYTNSDFQTDKDARKSTLGSVFTLNGGAVVWRSIKQSCIVDSTMEAEY 119

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           + ACEAAKE VWLKKFLTDLEVV NMHLPITLYCDNSGAVANSREP+SHKRGKHIERKYH
Sbjct: 120 VAACEAAKETVWLKKFLTDLEVVLNMHLPITLYCDNSGAVANSREPKSHKRGKHIERKYH 179

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREI+H+GDVI TKISSEQN+ADPFTKALTAKV ESHLHGL LR L
Sbjct: 180 LIREIVHQGDVIETKISSEQNMADPFTKALTAKVFESHLHGLGLRDL 226

[Close]

BLAST of Cmc01g0026831 vs. NCBI nr
Match: KAA0036988.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK21217.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.5e-78
Identity = 147/167 (88.02%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQT+K +RKSTSGSVFTLNGGAVVWRSIKQSCIADST+EAE+
Sbjct: 47  MLVYGSKDLILTGYTDSDFQTNKYARKSTSGSVFTLNGGAVVWRSIKQSCIADSTIEAEY 106

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           + ACEAAKEAVWLKKFLTDLE+VPNMHL ITLYCDNSGAVANSREPRSHKRGKHIER YH
Sbjct: 107 VAACEAAKEAVWLKKFLTDLEIVPNMHLSITLYCDNSGAVANSREPRSHKRGKHIERNYH 166

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREI+H+G+V+VT ISSEQN+ADPFTKALTAKV ESHL+GL L SL
Sbjct: 167 LIREIVHQGEVVVTNISSEQNMADPFTKALTAKVFESHLYGLGLHSL 213

[Close]

BLAST of Cmc01g0026831 vs. NCBI nr
Match: KAA0051362.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 300.8 bits (769), Expect = 7.2e-78
Identity = 147/167 (88.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQTDKD RKSTSGSVFTLNGGA+VWRSI+QSCI DS MEAE+
Sbjct: 60  MLVYGSKDLILTGYTDSDFQTDKDDRKSTSGSVFTLNGGAIVWRSIEQSCIVDSIMEAEY 119

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           +  CEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKR K+IERKYH
Sbjct: 120 VATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKREKNIERKYH 179

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIR+I+HRGDV VTKISSEQN+ DPFTKAL AKV ESHLHGL LR L
Sbjct: 180 LIRKIVHRGDVTVTKISSEQNMTDPFTKALMAKVFESHLHGLGLRGL 226

[Close]

BLAST of Cmc01g0026831 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.9e-29
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = 0


Query: 2    LVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFI 61
            L +G  D IL GYTD+D   D D+RKS++G +FT +GGA+ W+S  Q C+A ST EAE+I
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 62   VACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 121
             A E  KE +WLK+FL +L +    ++   +YCD+  A+  S+    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 122  IREIIHRGDVIVTKISSEQNIADPFTKAL 151
            IRE++    + V KIS+ +N AD  TK +
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVV 1311

[Close]

BLAST of Cmc01g0026831 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 54/143 (37.76%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 11   LTGYTDSDFQTDKDSRKSTSGSVFTL-NGGAVVWRSIKQSCIADSTMEAEFIVACEAAKE 70
            + GY DSD+   +  RKST+G +F + +   + W + +Q+ +A S+ EAE++   EA +E
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 71   AVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIIHRG 130
            A+WLK  LT + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH  RE +   
Sbjct: 1308 ALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNN 1367

Query: 131  DVIVTKISSEQNIADPFTKALTA 153
             + +  I +E  +AD FTK L A
Sbjct: 1368 VICLEYIPTENQLADIFTKPLPA 1388

[Close]

BLAST of Cmc01g0026831 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-11
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 11  LTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEFIVACEAAKEA 70
           L GY+D+D+  D +SR+STSG +F LNGG V WRS KQ  +A S+ E E++   EA +EA
Sbjct: 71  LVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEA 130

Query: 71  VWL 74
           VWL
Sbjct: 131 VWL 133

[Close]

BLAST of Cmc01g0026831 vs. ExPASy TrEMBL
Match: A0A5A7UX57 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00250 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.7e-86
Identity = 164/167 (98.20%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWR+IKQSCIADSTMEAEF
Sbjct: 356 MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRNIKQSCIADSTMEAEF 415

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH
Sbjct: 416 IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 475

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREIIHRGDVIVTKISSEQNIADPFTKALTAKV ESHLHGL LRSL
Sbjct: 476 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVFESHLHGLGLRSL 522

[Close]

BLAST of Cmc01g0026831 vs. ExPASy TrEMBL
Match: A0A5A7TKJ0 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00900 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.7e-81
Identity = 151/167 (90.42%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGS+FTLNGGAV+WRSIKQSCIA+STMEAE+
Sbjct: 293 MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSIFTLNGGAVIWRSIKQSCIANSTMEAEY 352

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           +  CEAAKEAVWLKKF TDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH
Sbjct: 353 VATCEAAKEAVWLKKFSTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 412

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREI+HRGDVIVTKIS EQN+ADPFTKALTAKV ES LHGL LR L
Sbjct: 413 LIREIVHRGDVIVTKISFEQNVADPFTKALTAKVFESDLHGLGLRGL 459

[Close]

BLAST of Cmc01g0026831 vs. ExPASy TrEMBL
Match: A0A5A7U7L0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001490 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.1e-79
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           M VYGSKDLILTGYT+SDFQTDKD+RKST GSVFTLNGGAVVWRSIKQSCI DSTMEAE+
Sbjct: 60  MFVYGSKDLILTGYTNSDFQTDKDARKSTLGSVFTLNGGAVVWRSIKQSCIVDSTMEAEY 119

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           + ACEAAKE VWLKKFLTDLEVV NMHLPITLYCDNSGAVANSREP+SHKRGKHIERKYH
Sbjct: 120 VAACEAAKETVWLKKFLTDLEVVLNMHLPITLYCDNSGAVANSREPKSHKRGKHIERKYH 179

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREI+H+GDVI TKISSEQN+ADPFTKALTAKV ESHLHGL LR L
Sbjct: 180 LIREIVHQGDVIETKISSEQNMADPFTKALTAKVFESHLHGLGLRDL 226

[Close]

BLAST of Cmc01g0026831 vs. ExPASy TrEMBL
Match: A0A5A7T2H7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00260 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.7e-78
Identity = 147/167 (88.02%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQT+K +RKSTSGSVFTLNGGAVVWRSIKQSCIADST+EAE+
Sbjct: 47  MLVYGSKDLILTGYTDSDFQTNKYARKSTSGSVFTLNGGAVVWRSIKQSCIADSTIEAEY 106

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           + ACEAAKEAVWLKKFLTDLE+VPNMHL ITLYCDNSGAVANSREPRSHKRGKHIER YH
Sbjct: 107 VAACEAAKEAVWLKKFLTDLEIVPNMHLSITLYCDNSGAVANSREPRSHKRGKHIERNYH 166

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIREI+H+G+V+VT ISSEQN+ADPFTKALTAKV ESHL+GL L SL
Sbjct: 167 LIREIVHQGEVVVTNISSEQNMADPFTKALTAKVFESHLYGLGLHSL 213

[Close]

BLAST of Cmc01g0026831 vs. ExPASy TrEMBL
Match: A0A5A7U6B9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00860 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.5e-78
Identity = 147/167 (88.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MLVYGSKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 60
           MLVYGSKDLILTGYTDSDFQTDKD RKSTSGSVFTLNGGA+VWRSI+QSCI DS MEAE+
Sbjct: 60  MLVYGSKDLILTGYTDSDFQTDKDDRKSTSGSVFTLNGGAIVWRSIEQSCIVDSIMEAEY 119

Query: 61  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 120
           +  CEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKR K+IERKYH
Sbjct: 120 VATCEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKREKNIERKYH 179

Query: 121 LIREIIHRGDVIVTKISSEQNIADPFTKALTAKVCESHLHGLSLRSL 168
           LIR+I+HRGDV VTKISSEQN+ DPFTKAL AKV ESHLHGL LR L
Sbjct: 180 LIRKIVHRGDVTVTKISSEQNMTDPFTKALMAKVFESHLHGLGLRGL 226

[Close]

BLAST of Cmc01g0026831 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 78.2 bits (191), Expect = 7.1e-15
Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 2   LVYGSK-DLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEAEF 61
           L Y S+ ++ L  ++D+ FQ+ KD+R+ST+G    L    + W+S KQ  ++ S+ EAE+
Sbjct: 432 LFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEY 491

Query: 62  IVACEAAKEAVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYH 121
                A  E +WL +F  +L++   +  P  L+CDN+ A+  +     H+R KHIE   H
Sbjct: 492 RALSFATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 551

Query: 122 LIRE 125
            +RE
Sbjct: 552 SVRE 553

The following BLAST results are available for this feature:

BLAST of Cmc01g0026831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059674.1	5.5e-86	98.20	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0041899.1	1.2e-80	90.42	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0051190.1	8.5e-79	89.22	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0036988.1	5.5e-78	88.02	gag/pol protein [Cucumis melo var. makuwa] >TYK21217.1 gag/pol protein [Cucumis ...	[more]
KAA0051362.1	7.2e-78	88.02	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0026831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.9e-29	44.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-21	37.76	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	4.6e-11	53.97	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc01g0026831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UX57	2.7e-86	98.20	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7TKJ0	5.7e-81	90.42	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5A7U7L0	4.1e-79	89.22	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G0014...	[more]
A0A5A7T2H7	2.7e-78	88.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G0026...	[more]
A0A5A7U6B9	3.5e-78	88.02	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00860...	[more]

BLAST of Cmc01g0026831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.1e-15	34.68	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 35..127
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 35..127
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 12..153 e-value: 3.68878E-68 score: 201.543

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0026831.1	Cmc01g0026831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding