Cmc01g0026581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0026581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	40S ribosomal protein S27
Location	CMiso1.1chr01: 27558553 .. 27559014 (-)
RNA-Seq Expression	Cmc01g0026581
Synteny	Cmc01g0026581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTCTTTTTCTTCTATTTCCTTTCCATGCCATTTTTTGTGACTGTTCAAATTTTGCACATCAATCTAGTGTTGTATCACCAAGTTCTCTTTGTTCAGTAGTTAATGTTTCTGTTTTTGACTTGATTTCTATAATATTATGAGATCCTGACAATACTGCTTTAATTGTCATATGTTGATGATTTGAAGGACGTCAAGTGCCAAGGATGTTTCAACATGTAAGTTCCATCACTTGTCACTAGTTCGATATATTTGCAACTCTTTTGGATTCTGCTTGAAGATGATGTAGATTGAAATTTCTGATGACGATTGTTTTGGTCAATAAAATGCAGTACCGTTGTCTTCAGCCACTCTCAAATTGTTGTGGTATGCGCTAACTGTCGAACAGTCTTATGCCAGCCGATGGGAGGACGTGCTAGACTCATCGAATGGTGTTCTTTAAGGAGAAAGGGTGATTGA

mRNA sequence

ATGGACGTCAAGTGCCAAGGATGTTTCAACATTACCGTTGTCTTCAGCCACTCTCAAATTGTTGTGGTATGCGCTAACTGTCGAACAGTCTTATGCCAGCCGATGGGAGGACGTGCTAGACTCATCGAATGGTGTTCTTTAAGGAGAAAGGGTGATTGA

Coding sequence (CDS)

ATGGACGTCAAGTGCCAAGGATGTTTCAACATTACCGTTGTCTTCAGCCACTCTCAAATTGTTGTGGTATGCGCTAACTGTCGAACAGTCTTATGCCAGCCGATGGGAGGACGTGCTAGACTCATCGAATGGTGTTCTTTAAGGAGAAAGGGTGATTGA

Protein sequence

MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD

Homology

[Close]

BLAST of Cmc01g0026581 vs. NCBI nr
Match: RWW87085.1 (hypothetical protein BHE74_00004097 [Ensete ventricosum])

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT+VFSHSQ VVVCANC+TVLCQP GGRARL + CS RRKGD
Sbjct: 16 MDVKCQGCFNITMVFSHSQAVVVCANCQTVLCQPTGGRARLTKGCSFRRKGD 67

[Close]

BLAST of Cmc01g0026581 vs. NCBI nr
Match: KAF5954918.1 (hypothetical protein HYC85_007774 [Camellia sinensis])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
           MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 63  MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 114

[Close]

BLAST of Cmc01g0026581 vs. NCBI nr
Match: XP_012849864.1 (PREDICTED: 40S ribosomal protein S27-2-like, partial [Erythranthe guttata])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 41 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 92

[Close]

BLAST of Cmc01g0026581 vs. NCBI nr
Match: XP_022841669.1 (40S ribosomal protein S27-2-like [Olea europaea var. sylvestris] >CAA2965754.1 40S ribosomal S27-2 [Olea europaea subsp. europaea] >CAA2985539.1 40S ribosomal S27-2 [Olea europaea subsp. europaea])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. NCBI nr
Match: XP_008369601.1 (40S ribosomal protein S27-2 [Malus domestica] >XP_008390225.1 40S ribosomal protein S27-2 [Malus domestica] >XP_009339525.1 PREDICTED: 40S ribosomal protein S27-2 [Pyrus x bretschneideri] >XP_009353498.1 PREDICTED: 40S ribosomal protein S27-2 [Pyrus x bretschneideri] >XP_009359856.1 PREDICTED: 40S ribosomal protein S27-2 [Pyrus x bretschneideri] >KAB2599166.1 40S ribosomal protein S27-2 [Pyrus ussuriensis x Pyrus communis] >TQD78173.1 hypothetical protein C1H46_036245 [Malus baccata])

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-19
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+T+LCQP GG+A+L E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC  C+TVLCQP GG+ARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-17
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRK 51
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GG+ARL E CS R+K
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cmc01g0026581 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-16
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRK 51
          MDVKCQGCFNIT VFSHSQ VV+C NC+T+LC P GG+A+L E CS R+K
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cmc01g0026581 vs. ExPASy Swiss-Prot
Match: O74330 (40S ribosomal protein S27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rps27 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.3e-16
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRK 51
          MDVKC GCFNIT VFSH+Q VV+C +C +VLCQP GG+ARL+E CS RRK
Sbjct: 33 MDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82

[Close]

BLAST of Cmc01g0026581 vs. ExPASy TrEMBL
Match: A0A6J1JTM3 (40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy TrEMBL
Match: A0A2G9GMY8 (40S ribosomal protein S27 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04765 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy TrEMBL
Match: A0A251RMF3 (40S ribosomal protein S27 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0362521 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy TrEMBL
Match: M5XFZ8 (40S ribosomal protein S27 OS=Prunus persica OX=3760 GN=PRUPE_1G212900 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. ExPASy TrEMBL
Match: A0A6I9TT28 (40S ribosomal protein S27 OS=Sesamum indicum OX=4182 GN=LOC105170061 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GGRARL E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-20
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          MDVKCQGCFNIT VFSHSQ VVVC NC+T+LCQP GG+A+L E CS RRKGD
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Cmc01g0026581 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 89.7 bits (221), Expect = 7.3e-19
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRK 51
          MDVKCQGCFNIT VFSHSQ VVVC NC+TVLCQP GG+ARL E CS R+K
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Cmc01g0026581 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-17
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRK 51
          MDVKCQGCFNIT VFSHSQ VV+C NC+T+LC P GG+A+L E CS R+K
Sbjct: 35 MDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Cmc01g0026581 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.0e-12
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1  MDVKCQGCFNITVVFSHSQIVVVCANCRTVLCQPMGGRARLIEWCSLRRKGD 53
          M V+C  C NIT +FSHSQ VVVC  C+ VLCQP GG+A+L   CS R+  D
Sbjct: 35 MLVRCSDCINITTIFSHSQTVVVCGKCQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of Cmc01g0026581 vs. NCBI nr


Match Name	E-value	Identity	Description
RWW87085.1	2.2e-17	84.62	hypothetical protein BHE74_00004097 [Ensete ventricosum]	[more]
KAF5954918.1	2.9e-17	84.62	hypothetical protein HYC85_007774 [Camellia sinensis]	[more]
XP_012849864.1	2.9e-17	84.62	PREDICTED: 40S ribosomal protein S27-2-like, partial [Erythranthe guttata]	[more]
XP_022841669.1	2.9e-17	84.62	40S ribosomal protein S27-2-like [Olea europaea var. sylvestris] >CAA2965754.1 4...	[more]
XP_008369601.1	2.9e-17	84.62	40S ribosomal protein S27-2 [Malus domestica] >XP_008390225.1 40S ribosomal prot...	[more]

BLAST of Cmc01g0026581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	2.4e-19	78.85	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
Q96564	5.4e-19	80.77	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
Q8L953	1.0e-17	80.00	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
O64650	3.3e-16	72.00	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
O74330	4.3e-16	72.00	40S ribosomal protein S27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	[more]

BLAST of Cmc01g0026581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTM3	1.4e-17	84.62	40S ribosomal protein S27 OS=Cucurbita maxima OX=3661 GN=LOC111489630 PE=3 SV=1	[more]
A0A2G9GMY8	1.4e-17	84.62	40S ribosomal protein S27 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04765...	[more]
A0A251RMF3	1.4e-17	84.62	40S ribosomal protein S27 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0362521 ...	[more]
M5XFZ8	1.4e-17	84.62	40S ribosomal protein S27 OS=Prunus persica OX=3760 GN=PRUPE_1G212900 PE=3 SV=1	[more]
A0A6I9TT28	1.4e-17	84.62	40S ribosomal protein S27 OS=Sesamum indicum OX=4182 GN=LOC105170061 PE=3 SV=1	[more]

BLAST of Cmc01g0026581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	1.7e-20	78.85	ribosomal protein S27	[more]
AT5G47930.1	7.3e-19	80.00	Zinc-binding ribosomal protein family protein	[more]
AT2G45710.1	2.3e-17	72.00	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	1.0e-12	57.69	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 1..50 e-value: 1.8E-20 score: 72.4
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 1..52
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 1..52 e-value: 1.1E-24 score: 88.2
None	No IPR available	PANTHER	PTHR11594:SF16	40S RIBOSOMAL PROTEIN S27-1-RELATED	coord: 1..52
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0026581.1	Cmc01g0026581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome