Cmc01g0025711 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0025711
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 26626560 .. 26627291 (-)
RNA-Seq Expression	Cmc01g0025711
Synteny	Cmc01g0025711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATGAGGATATTGAAAAAACGGCTTCCAGAACTCACAAGGGTCATTATGAGTTCTTAGTTATGCTTTTTGGGTTGACTAACGCACCAGCCACCTTTCAAGCGTTGATGAATACAATATTTAAGCCCTTTTTTAGAAAATTTGTACTAGTATTCTTTGATGACATACTCGTCTACAGTAGGGACACAGTTGATCACGTGGAACATATGAGAAAGGTGTTGTCCGTACTAAGAGAACATGAGTTGTACGCAAACAAGAAGAAATGTAGTTTTGCTCAGCATAAAGTGGAATATTTAGGCCATATTATATCCGGAGAAGGGGTTGAAGTGGACTCGAAGAAGATCAAGTCAATTACTAAGTGGCCAAAACCTACGAACATCAAAGAAGTTAGAGGTTTTTTTAGGCTCACGAGGTATTATCGACGTTTTGTACAGAACTATGGAGCTATTGCAGCACCATTGACTCAGTTGTTGAAAATGGGGGATATAAATGGCGATGCATTTGAACAGCTTAAGAAGGCAATGTCATCCCTTCCAATGTTGGCACTACTAGACTTTAATCAGCCTTTTGAAATAGAAATTGATGCTTCATGCTATGGTGTTGGGGCAGTGCTAATTCAGGCAAAGAGACCAATCACATACTACAGTCATACGTTAGCCTTGAGGGATAGAGCCCGGCCAGTGTACGAGAGGGAATTAATGATTGTGGTACTGGCCGTCCAACGCTAG

mRNA sequence

ATGGTGGATGAGGATATTGAAAAAACGGCTTCCAGAACTCACAAGGGTCATTATGAGTTCTTAGTTATGCTTTTTGGGTTGACTAACGCACCAGCCACCTTTCAAGCGTTGATGAATACAATATTTAAGCCCTTTTTTAGAAAATTTGTACTAGTATTCTTTGATGACATACTCGTCTACAGTAGGGACACAGTTGATCACGTGGAACATATGAGAAAGGTGTTGTCCGTACTAAGAGAACATGAGTTGTACGCAAACAAGAAGAAATGTAGTTTTGCTCAGCATAAAGTGGAATATTTAGGCCATATTATATCCGGAGAAGGGGTTGAAGTGGACTCGAAGAAGATCAAGTCAATTACTAAGTGGCCAAAACCTACGAACATCAAAGAAGTTAGAGGTTTTTTTAGGCTCACGAGGTATTATCGACGTTTTGTACAGAACTATGGAGCTATTGCAGCACCATTGACTCAGTTGTTGAAAATGGGGGATATAAATGGCGATGCATTTGAACAGCTTAAGAAGGCAATGTCATCCCTTCCAATGTTGGCACTACTAGACTTTAATCAGCCTTTTGAAATAGAAATTGATGCTTCATGCTATGGTGTTGGGGCAGTGCTAATTCAGGCAAAGAGACCAATCACATACTACAGTCATACGTTAGCCTTGAGGGATAGAGCCCGGCCAGTGTACGAGAGGGAATTAATGATTGTGGTACTGGCCGTCCAACGCTAG

Coding sequence (CDS)

ATGGTGGATGAGGATATTGAAAAAACGGCTTCCAGAACTCACAAGGGTCATTATGAGTTCTTAGTTATGCTTTTTGGGTTGACTAACGCACCAGCCACCTTTCAAGCGTTGATGAATACAATATTTAAGCCCTTTTTTAGAAAATTTGTACTAGTATTCTTTGATGACATACTCGTCTACAGTAGGGACACAGTTGATCACGTGGAACATATGAGAAAGGTGTTGTCCGTACTAAGAGAACATGAGTTGTACGCAAACAAGAAGAAATGTAGTTTTGCTCAGCATAAAGTGGAATATTTAGGCCATATTATATCCGGAGAAGGGGTTGAAGTGGACTCGAAGAAGATCAAGTCAATTACTAAGTGGCCAAAACCTACGAACATCAAAGAAGTTAGAGGTTTTTTTAGGCTCACGAGGTATTATCGACGTTTTGTACAGAACTATGGAGCTATTGCAGCACCATTGACTCAGTTGTTGAAAATGGGGGATATAAATGGCGATGCATTTGAACAGCTTAAGAAGGCAATGTCATCCCTTCCAATGTTGGCACTACTAGACTTTAATCAGCCTTTTGAAATAGAAATTGATGCTTCATGCTATGGTGTTGGGGCAGTGCTAATTCAGGCAAAGAGACCAATCACATACTACAGTCATACGTTAGCCTTGAGGGATAGAGCCCGGCCAGTGTACGAGAGGGAATTAATGATTGTGGTACTGGCCGTCCAACGCTAG

Protein sequence

MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVYSRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSITKWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIVVLAVQR

Homology

[Close]

BLAST of Cmc01g0025711 vs. NCBI nr
Match: KAA0034862.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY
Sbjct: 502 MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 561

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT
Sbjct: 562 SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 621

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 180
           KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP
Sbjct: 622 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 681

Query: 181 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 238
           MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV
Sbjct: 682 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 738

[Close]

BLAST of Cmc01g0025711 vs. NCBI nr
Match: TYJ96674.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY
Sbjct: 502 MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 561

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT
Sbjct: 562 SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 621

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 180
           KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP
Sbjct: 622 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 681

Query: 181 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 238
           MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV
Sbjct: 682 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 738

[Close]

BLAST of Cmc01g0025711 vs. NCBI nr
Match: KAA0064684.1 (tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 4.5e-105
Identity = 198/232 (85.34%), Postives = 210/232 (90.52%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           MV++DIEKTA RTH+GHYEFLVM FGLTNAPATFQALMNTIFKPF RKFVLVFFDDIL+Y
Sbjct: 546 MVEKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIY 605

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S++TVDHVEHMRKVLSVLREHELYANKKKCSFAQ KVEYLGHI+SGEGVEVD +KIKSIT
Sbjct: 606 SKNTVDHVEHMRKVLSVLREHELYANKKKCSFAQQKVEYLGHIMSGEGVEVDPEKIKSIT 665

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDIN-----GDAFEQLKKA 180
           KWPKPTNIKEVRGF  LT YYRRFVQNYGAIAAPLTQLLK G         DAFE+LKKA
Sbjct: 666 KWPKPTNIKEVRGFLGLTGYYRRFVQNYGAIAAPLTQLLKKGGYKWSAEAEDAFERLKKA 725

Query: 181 MSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRAR 228
           MSSLP+LAL DFNQPFEI+ DAS YGVGAVLIQAKRPI YY+HTLALRDRAR
Sbjct: 726 MSSLPILALPDFNQPFEIDTDASGYGVGAVLIQAKRPIAYYNHTLALRDRAR 777

[Close]

BLAST of Cmc01g0025711 vs. NCBI nr
Match: KAA0033837.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20583.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.5e-100
Identity = 189/245 (77.14%), Postives = 207/245 (84.49%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M DEDIEKT  RTH+GHYEFLVMLFGLTNAPATFQALMN IFKPF RK VLVFFDDILVY
Sbjct: 658 MADEDIEKTTFRTHEGHYEFLVMLFGLTNAPATFQALMNAIFKPFLRKLVLVFFDDILVY 717

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S++  DH+ H+ KVLS+LR+H+LYAN+KKCSFAQHK+EYLGH+ISGEGVEVD +KIKSI 
Sbjct: 718 SKNENDHLVHLGKVLSILRKHKLYANRKKCSFAQHKIEYLGHVISGEGVEVDPEKIKSIV 777

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGD-----AFEQLKKA 180
           +WP PTNIKEVRGF  LT YYRRFVQNYG IAAPLTQLLK G          AF+QLKKA
Sbjct: 778 EWPVPTNIKEVRGFLGLTGYYRRFVQNYGTIAAPLTQLLKKGGYKWSDEAMVAFDQLKKA 837

Query: 181 MSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELM 240
           M SLP+LAL +F QPFEIE DAS YG GA+LIQA RP  YYSHTLALRDRARP YERELM
Sbjct: 838 MMSLPVLALPNFTQPFEIETDASGYGFGAMLIQASRPTAYYSHTLALRDRARPDYERELM 897

[Close]

BLAST of Cmc01g0025711 vs. NCBI nr
Match: KAA0067574.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97182.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 7.4e-100
Identity = 188/247 (76.11%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M D+DIEKTA RTH+GHYEFLVM FGLTNAPATFQAL+NTIFKPF RKFVLVFFDDIL+Y
Sbjct: 362 MGDKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALVNTIFKPFLRKFVLVFFDDILIY 421

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S++  DHV HM KVLS+LR+HELYAN+KKC+FAQ K+EYLGH+ISGEGV VD +KIK+IT
Sbjct: 422 SKNEADHVLHMGKVLSILRQHELYANQKKCNFAQKKIEYLGHVISGEGVAVDPEKIKAIT 481

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMG----DINGDAFEQLKKAM 180
            WP+PTNIKE+RGF  LT YYRRFV NYGAIAAPLTQL K G    +    AF++LK AM
Sbjct: 482 NWPQPTNIKEIRGFLGLTGYYRRFVHNYGAIAAPLTQLKKGGYKWTEEATKAFDKLKTAM 541

Query: 181 SSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMI 240
            SLP+LAL DFNQPFEIE DAS +GVGAVL+Q KRPI YY HTLA RDR RPVYERELM 
Sbjct: 542 LSLPILALPDFNQPFEIETDASGFGVGAVLVQDKRPIAYYKHTLAFRDRVRPVYERELMA 601

Query: 241 VVLAVQR 244
           VVLAVQR
Sbjct: 602 VVLAVQR 608

[Close]

BLAST of Cmc01g0025711 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.3e-45
Identity = 100/249 (40.16%), Postives = 143/249 (57.43%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M +E I KTA  T  GHYE+L M FGL NAPATFQ  MN I +P   K  LV+ DDI+++
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S    +H+  ++ V + L +  L     KC F + +  +LGHI++ +G++ +  K+K+I 
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMG---DING----DAFEQLK 180
            +P PT  KE+R F  LT YYR+F+ NY  IA P+T  LK     D       +AFE+LK
Sbjct: 431 SYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLK 490

Query: 181 KAMSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERE 240
             +   P+L L DF + F +  DAS   +GAVL Q   PI++ S TL   +      E+E
Sbjct: 491 ALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKE 550

Query: 241 LMIVVLAVQ 243
           L+ +V A +
Sbjct: 551 LLAIVWATK 559

[Close]

BLAST of Cmc01g0025711 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.0e-43
Identity = 97/249 (38.96%), Postives = 144/249 (57.83%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M  E + KTA  T  GHYE+L M FGL NAPATFQ  MN I +P   K  LV+ DDI+V+
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S    +H++ +  V   L +  L     KC F + +  +LGH+++ +G++ + +KI++I 
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMG---DING----DAFEQLK 180
           K+P PT  KE++ F  LT YYR+F+ N+  IA P+T+ LK     D        AF++LK
Sbjct: 432 KYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

Query: 181 KAMSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERE 240
             +S  P+L + DF + F +  DAS   +GAVL Q   P++Y S TL   +      E+E
Sbjct: 492 YLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKE 551

Query: 241 LMIVVLAVQ 243
           L+ +V A +
Sbjct: 552 LLAIVWATK 560

[Close]

BLAST of Cmc01g0025711 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.2e-41
Identity = 92/259 (35.52%), Postives = 146/259 (56.37%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M + DI KTA  T  G YEFL + FGL NAPA FQ +++ I +    K   V+ DDI+V+
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S D   H +++R VL+ L +  L  N +K  F   +VE+LG+I++ +G++ D KK+++I+
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQL-----------------LKMGD 180
           + P PT++KE++ F  +T YYR+F+Q+Y  +A PLT L                 + + +
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDE 407

Query: 181 INGDAFEQLKKAMSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQ----AKRPITYYSHT 239
               +F  LK  + S  +LA   F +PF +  DAS + +GAVL Q      RPI Y S +
Sbjct: 408 TALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRS 467

[Close]

BLAST of Cmc01g0025711 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.8e-39
Identity = 89/259 (34.36%), Postives = 146/259 (56.37%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           + + D EKT+   + G YEF  + FGL NA + FQ  ++ + +    K   V+ DD++++
Sbjct: 287 LAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIF 346

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S +  DHV H+  VL  L +  +  +++K  F +  VEYLG I+S +G + D +K+K+I 
Sbjct: 347 SENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQ 406

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLK-----------------MGD 180
           ++P+P  + +VR F  L  YYR F++++ AIA P+T +LK                   +
Sbjct: 407 EYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNE 466

Query: 181 INGDAFEQLKKAMSSLP-MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLAL 240
              +AF++L+  ++S   +L   DF +PF++  DAS  G+GAVL Q  RPIT  S TL  
Sbjct: 467 TQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQ 526

Query: 241 RDRARPVYERELMIVVLAV 242
            ++     EREL+ +V A+
Sbjct: 527 PEQNYATNERELLAIVWAL 545

[Close]

BLAST of Cmc01g0025711 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-32
Identity = 81/249 (32.53%), Postives = 132/249 (53.01%), Query Frame = 0


Query: 5   DIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVYSRDT 64
           D  K A R  +G +E+LVM +G++ APA FQ  +NTI        V+ + DDIL++S+  
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575

Query: 65  VDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSITKWPK 124
            +HV+H++ VL  L+   L  N+ KC F Q +V+++G+ IS +G     + I  + +W +
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635

Query: 125 PTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMG------DINGDAFEQLKKAMSS 184
           P N KE+R F     Y R+F+     +  PL  LLK             A E +K+ + S
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVS 695

Query: 185 LPMLALLDFNQPFEIEIDASCYGVGAVLIQAK-----RPITYYSHTLALRDRARPVYERE 243
            P+L   DF++   +E DAS   VGAVL Q        P+ YYS  ++       V ++E
Sbjct: 696 PPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755

[Close]

BLAST of Cmc01g0025711 vs. ExPASy TrEMBL
Match: A0A5A7SUI3 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00270 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 6.7e-131
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY
Sbjct: 502 MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 561

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT
Sbjct: 562 SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 621

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 180
           KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP
Sbjct: 622 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 681

Query: 181 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 238
           MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV
Sbjct: 682 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 738

[Close]

BLAST of Cmc01g0025711 vs. ExPASy TrEMBL
Match: A0A5D3BCG7 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00230 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 6.7e-131
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY
Sbjct: 502 MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 561

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT
Sbjct: 562 SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 621

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 180
           KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP
Sbjct: 622 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGDAFEQLKKAMSSLP 681

Query: 181 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 238
           MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV
Sbjct: 682 MLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMIV 738

[Close]

BLAST of Cmc01g0025711 vs. ExPASy TrEMBL
Match: A0A5A7VBR1 (Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00180 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.2e-105
Identity = 198/232 (85.34%), Postives = 210/232 (90.52%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           MV++DIEKTA RTH+GHYEFLVM FGLTNAPATFQALMNTIFKPF RKFVLVFFDDIL+Y
Sbjct: 546 MVEKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPFLRKFVLVFFDDILIY 605

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S++TVDHVEHMRKVLSVLREHELYANKKKCSFAQ KVEYLGHI+SGEGVEVD +KIKSIT
Sbjct: 606 SKNTVDHVEHMRKVLSVLREHELYANKKKCSFAQQKVEYLGHIMSGEGVEVDPEKIKSIT 665

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDIN-----GDAFEQLKKA 180
           KWPKPTNIKEVRGF  LT YYRRFVQNYGAIAAPLTQLLK G         DAFE+LKKA
Sbjct: 666 KWPKPTNIKEVRGFLGLTGYYRRFVQNYGAIAAPLTQLLKKGGYKWSAEAEDAFERLKKA 725

Query: 181 MSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRAR 228
           MSSLP+LAL DFNQPFEI+ DAS YGVGAVLIQAKRPI YY+HTLALRDRAR
Sbjct: 726 MSSLPILALPDFNQPFEIDTDASGYGVGAVLIQAKRPIAYYNHTLALRDRAR 777

[Close]

BLAST of Cmc01g0025711 vs. ExPASy TrEMBL
Match: A0A5A7SX47 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001840 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.3e-101
Identity = 189/245 (77.14%), Postives = 207/245 (84.49%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M DEDIEKT  RTH+GHYEFLVMLFGLTNAPATFQALMN IFKPF RK VLVFFDDILVY
Sbjct: 658 MADEDIEKTTFRTHEGHYEFLVMLFGLTNAPATFQALMNAIFKPFLRKLVLVFFDDILVY 717

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S++  DH+ H+ KVLS+LR+H+LYAN+KKCSFAQHK+EYLGH+ISGEGVEVD +KIKSI 
Sbjct: 718 SKNENDHLVHLGKVLSILRKHKLYANRKKCSFAQHKIEYLGHVISGEGVEVDPEKIKSIV 777

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGD-----AFEQLKKA 180
           +WP PTNIKEVRGF  LT YYRRFVQNYG IAAPLTQLLK G          AF+QLKKA
Sbjct: 778 EWPVPTNIKEVRGFLGLTGYYRRFVQNYGTIAAPLTQLLKKGGYKWSDEAMVAFDQLKKA 837

Query: 181 MSSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELM 240
           M SLP+LAL +F QPFEIE DAS YG GA+LIQA RP  YYSHTLALRDRARP YERELM
Sbjct: 838 MMSLPVLALPNFTQPFEIETDASGYGFGAMLIQASRPTAYYSHTLALRDRARPDYERELM 897

[Close]

BLAST of Cmc01g0025711 vs. ExPASy TrEMBL
Match: A0A5D3BBH4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00610 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.6e-100
Identity = 188/247 (76.11%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 1   MVDEDIEKTASRTHKGHYEFLVMLFGLTNAPATFQALMNTIFKPFFRKFVLVFFDDILVY 60
           M D+DIEKTA RTH+GHYEFLVM FGLTNAPATFQAL+NTIFKPF RKFVLVFFDDIL+Y
Sbjct: 362 MGDKDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQALVNTIFKPFLRKFVLVFFDDILIY 421

Query: 61  SRDTVDHVEHMRKVLSVLREHELYANKKKCSFAQHKVEYLGHIISGEGVEVDSKKIKSIT 120
           S++  DHV HM KVLS+LR+HELYAN+KKC+FAQ K+EYLGH+ISGEGV VD +KIK+IT
Sbjct: 422 SKNEADHVLHMGKVLSILRQHELYANQKKCNFAQKKIEYLGHVISGEGVAVDPEKIKAIT 481

Query: 121 KWPKPTNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMG----DINGDAFEQLKKAM 180
            WP+PTNIKE+RGF  LT YYRRFV NYGAIAAPLTQL K G    +    AF++LK AM
Sbjct: 482 NWPQPTNIKEIRGFLGLTGYYRRFVHNYGAIAAPLTQLKKGGYKWTEEATKAFDKLKTAM 541

Query: 181 SSLPMLALLDFNQPFEIEIDASCYGVGAVLIQAKRPITYYSHTLALRDRARPVYERELMI 240
            SLP+LAL DFNQPFEIE DAS +GVGAVL+Q KRPI YY HTLA RDR RPVYERELM 
Sbjct: 542 LSLPILALPDFNQPFEIETDASGFGVGAVLVQDKRPIAYYKHTLAFRDRVRPVYERELMA 601

Query: 241 VVLAVQR 244
           VVLAVQR
Sbjct: 602 VVLAVQR 608

[Close]

BLAST of Cmc01g0025711 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-30
Identity = 64/131 (48.85%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 68  VEHMRKVLSVLREHELYANKKKCSFAQHKVEYLG--HIISGEGVEVDSKKIKSITKWPKP 127
           + H+  VL +  +H+ YAN+KKC+F Q ++ YLG  HIISGEGV  D  K++++  WP+P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 128 TNIKEVRGFFRLTRYYRRFVQNYGAIAAPLTQLLKMGDINGD-----AFEQLKKAMSSLP 187
            N  E+RGF  LT YYRRFV+NYG I  PLT+LLK   +        AF+ LK A+++LP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 188 MLALLDFNQPF 192
           +LAL D   PF
Sbjct: 121 VLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc01g0025711 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034862.1	1.4e-130	100.00	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
TYJ96674.1	1.4e-130	100.00	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0064684.1	4.5e-105	85.34	tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa] >TYK19906.1 tet...	[more]
KAA0033837.1	1.5e-100	77.14	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20583.1 Ty3/gyp...	[more]
KAA0067574.1	7.4e-100	76.11	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97182.1 Ty3/gyp...	[more]

BLAST of Cmc01g0025711 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	9.3e-45	40.16	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	1.0e-43	38.96	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	6.2e-41	35.52	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	5.8e-39	34.36	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	1.4e-32	32.53	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc01g0025711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUI3	6.7e-131	100.00	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BCG7	6.7e-131	100.00	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7VBR1	2.2e-105	85.34	Tetratricopeptide repeat protein SKI3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7SX47	7.3e-101	77.14	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH4	3.6e-100	76.11	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc01g0025711 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.7e-30	48.85	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.370		coord: 190..243 e-value: 1.8E-5 score: 26.6
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..29 e-value: 2.2E-39 score: 136.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..243
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 3..243
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..104 e-value: 1.86382E-48 score: 155.831
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..104 e-value: 2.2E-39 score: 136.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 113..189 e-value: 8.3E-21 score: 75.8
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 167..242 e-value: 9.2E-20 score: 70.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 13..104 e-value: 2.1E-19 score: 69.9
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..104 score: 12.462942
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0025711.1	Cmc01g0025711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0047938	glucose-6-phosphate 1-epimerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity