Cmc01g0024831 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0024831
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-Pol polyprotein
Location	CMiso1.1chr01: 25383257 .. 25384735 (-)
RNA-Seq Expression	Cmc01g0024831
Synteny	Cmc01g0024831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAAAGTTCGAGATTGAGAAGTTCAACGAAACTAATTTCTCGTTATGGACGTTGAACACGAAGGCTGTCTTGAGAAAAGATAATTGCCTTGAAGCCATCGATAAGGGGCCAGCGGAGATTACAGATGACAACAAGTGGAACGAGATGGATGGAAATGCTATGGAAAACATTCATCTAGCATTAGCTGATAATGTGTTGTCAAGCATCAAGGAGAAGAAAATTTCAAAGGAGATTTGGGACCATCTCACTAAATTGTATGAGACCAAATCACTTCACAACAAGATTTTCCTTAAGAGGAAGTTGTACACTCTTCGGATGTCTGAATCCACATCAATGACAGAGCATATGAATACATTGAATACTTTATTTTCTCAACTCACATTATTGGGTTATAAAATAGAGCCAAATGAACGTGCAGAACTTCTACTTCAAAGTCTTCCTGATTCGTACGATCAACTTGTCATCAATCTGACAAATAATATTCTAATTGACTATCTAAGCTTTGATGATGTTGTTGCTGCTGTCCTAGAAGAGGAAAATCGACGCAAGAACAAAGAAGATAAGTTGGTAACTTTACAACAAGCAGAAGCCTTGACAGTGACAAGAGGTAGACCATTGGAACGCAACTCAAGTGGCAGCAAAAATCAAAGAAGGTCAAAGTCACGAAGTAAGAAGAACATAAAGTGCTACAATTGTGGAAAGAAGGGACATCTAAAGAAGAATTGTTGGAATCTAAACAAGAAAGATTCTAATCCTCAAGGAAATGTAGCAAGCACCATAAATGAAGGTGGTGCCTTGTCTTGTGAAGCAGTGACAACTACGGAAGGCAGAAAAAGAATGGCTGATGGATGGTTCTTCGACTCAGGAGCCACTTATCACATGACCTCTCGTCGAGAATGGTTCCATAATTACAAACCTATCTCTAGAGGATCTTTGTTCAGTTGTAATGATCATGCCTTAAAGATTGTCGGCATTGGAACTATCAAGTTGAAGCTCCATGATAATACTGTTTGCACGATTCAACAAGTGCGACATGTAGAAGACCTGAAAAAGAACTTGCTCTCATTAGGTCAACTTGATGATCTTGATTGCAAAGTTGTAGTTGAGAAAAGACTTACGAAGTTAATCAAAGGTGCGCTAGTACTTATGAAAGGAAGAAAGGTGGATGCAAACTTGTACATGTTAGAGGGAGAAACTTTGCAGGAAGGAGAAGCATCTGTTGCTTCAAGTAGTTCAGGTAAAAATCTCTTAATGATGTGGCATTGCAAATTAGGCCATATGTCTGAACAAGGATTGAAAGTTCTTGTAGAGCAAAATCTACTCCCAGGGCTCACTAAGGTGTCTCTACACTTTTGTGAGCATTGTGTTACAAGTAAGCAGCACAGATTGAAGTTCAATACATCAAGTTCTAGAAGTAAAGTGATTCTAGAACTGGTTCCTTCTGATGTATGGCAATCACCGGTTACATTTTAG

mRNA sequence

ATGGCGGCAAAGTTCGAGATTGAGAAGTTCAACGAAACTAATTTCTCGTTATGGACGTTGAACACGAAGGCTGTCTTGAGAAAAGATAATTGCCTTGAAGCCATCGATAAGGGGCCAGCGGAGATTACAGATGACAACAAGTGGAACGAGATGGATGGAAATGCTATGGAAAACATTCATCTAGCATTAGCTGATAATGTGTTGTCAAGCATCAAGGAGAAGAAAATTTCAAAGGAGATTTGGGACCATCTCACTAAATTGTATGAGACCAAATCACTTCACAACAAGATTTTCCTTAAGAGGAAGTTGTACACTCTTCGGATGTCTGAATCCACATCAATGACAGAGCATATGAATACATTGAATACTTTATTTTCTCAACTCACATTATTGGGTTATAAAATAGAGCCAAATGAACGTGCAGAACTTCTACTTCAAAGTCTTCCTGATTCGTACGATCAACTTGTCATCAATCTGACAAATAATATTCTAATTGACTATCTAAGCTTTGATGATGTTGTTGCTGCTGTCCTAGAAGAGGAAAATCGACGCAAGAACAAAGAAGATAAGTTGGTAACTTTACAACAAGCAGAAGCCTTGACAGTGACAAGAGGTAGACCATTGGAACGCAACTCAAGTGGCAGCAAAAATCAAAGAAGGTCAAAGTCACGAAGTAAGAAGAACATAAAGTGCTACAATTGTGGAAAGAAGGGACATCTAAAGAAGAATTGTTGGAATCTAAACAAGAAAGATTCTAATCCTCAAGGAAATGTAGCAAGCACCATAAATGAAGGTGGTGCCTTGTCTTGTGAAGCAGTGACAACTACGGAAGGCAGAAAAAGAATGGCTGATGGATGGTTCTTCGACTCAGGAGCCACTTATCACATGACCTCTCGTCGAGAATGGTTCCATAATTACAAACCTATCTCTAGAGGATCTTTGTTCAGTTGTAATGATCATGCCTTAAAGATTGTCGGCATTGGAACTATCAAGTTGAAGCTCCATGATAATACTGTTTGCACGATTCAACAAGTGCGACATGTAGAAGACCTGAAAAAGAACTTGCTCTCATTAGGTCAACTTGATGATCTTGATTGCAAAGTTGTAGTTGAGAAAAGACTTACGAAGTTAATCAAAGGTGCGCTAGTACTTATGAAAGGAAGAAAGGTGGATGCAAACTTGTACATGTTAGAGGGAGAAACTTTGCAGGAAGGAGAAGCATCTGTTGCTTCAAGTAGTTCAGGTAAAAATCTCTTAATGATGTGGCATTGCAAATTAGGCCATATGTCTGAACAAGGATTGAAAGTTCTTGTAGAGCAAAATCTACTCCCAGGGCTCACTAAGGTGTCTCTACACTTTTGTGAGCATTGTGTTACAAGTAAGCAGCACAGATTGAAGTTCAATACATCAAGTTCTAGAAGTAAAGTGATTCTAGAACTGGTTCCTTCTGATGTATGGCAATCACCGGTTACATTTTAG

Coding sequence (CDS)

ATGGCGGCAAAGTTCGAGATTGAGAAGTTCAACGAAACTAATTTCTCGTTATGGACGTTGAACACGAAGGCTGTCTTGAGAAAAGATAATTGCCTTGAAGCCATCGATAAGGGGCCAGCGGAGATTACAGATGACAACAAGTGGAACGAGATGGATGGAAATGCTATGGAAAACATTCATCTAGCATTAGCTGATAATGTGTTGTCAAGCATCAAGGAGAAGAAAATTTCAAAGGAGATTTGGGACCATCTCACTAAATTGTATGAGACCAAATCACTTCACAACAAGATTTTCCTTAAGAGGAAGTTGTACACTCTTCGGATGTCTGAATCCACATCAATGACAGAGCATATGAATACATTGAATACTTTATTTTCTCAACTCACATTATTGGGTTATAAAATAGAGCCAAATGAACGTGCAGAACTTCTACTTCAAAGTCTTCCTGATTCGTACGATCAACTTGTCATCAATCTGACAAATAATATTCTAATTGACTATCTAAGCTTTGATGATGTTGTTGCTGCTGTCCTAGAAGAGGAAAATCGACGCAAGAACAAAGAAGATAAGTTGGTAACTTTACAACAAGCAGAAGCCTTGACAGTGACAAGAGGTAGACCATTGGAACGCAACTCAAGTGGCAGCAAAAATCAAAGAAGGTCAAAGTCACGAAGTAAGAAGAACATAAAGTGCTACAATTGTGGAAAGAAGGGACATCTAAAGAAGAATTGTTGGAATCTAAACAAGAAAGATTCTAATCCTCAAGGAAATGTAGCAAGCACCATAAATGAAGGTGGTGCCTTGTCTTGTGAAGCAGTGACAACTACGGAAGGCAGAAAAAGAATGGCTGATGGATGGTTCTTCGACTCAGGAGCCACTTATCACATGACCTCTCGTCGAGAATGGTTCCATAATTACAAACCTATCTCTAGAGGATCTTTGTTCAGTTGTAATGATCATGCCTTAAAGATTGTCGGCATTGGAACTATCAAGTTGAAGCTCCATGATAATACTGTTTGCACGATTCAACAAGTGCGACATGTAGAAGACCTGAAAAAGAACTTGCTCTCATTAGGTCAACTTGATGATCTTGATTGCAAAGTTGTAGTTGAGAAAAGACTTACGAAGTTAATCAAAGGTGCGCTAGTACTTATGAAAGGAAGAAAGGTGGATGCAAACTTGTACATGTTAGAGGGAGAAACTTTGCAGGAAGGAGAAGCATCTGTTGCTTCAAGTAGTTCAGGTAAAAATCTCTTAATGATGTGGCATTGCAAATTAGGCCATATGTCTGAACAAGGATTGAAAGTTCTTGTAGAGCAAAATCTACTCCCAGGGCTCACTAAGGTGTCTCTACACTTTTGTGAGCATTGTGTTACAAGTAAGCAGCACAGATTGAAGTTCAATACATCAAGTTCTAGAAGTAAAGTGATTCTAGAACTGGTTCCTTCTGATGTATGGCAATCACCGGTTACATTTTAG

Protein sequence

MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIHLALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNTLNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEEENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHLKKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLMMWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILELVPSDVWQSPVTF

Homology

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BLAST of Cmc01g0024831 vs. NCBI nr
Match: KAA0026163.1 (Gag-Pol [Cucumis melo var. makuwa] >TYK11620.1 Gag-Pol [Cucumis melo var. makuwa])

HSP 1 Score: 771.5 bits (1991), Expect = 4.2e-219
Identity = 401/460 (87.17%), Postives = 413/460 (89.78%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MAAKFEIEKFN TNFSLWTL  K VLR DNCLEAIDKGPAEITDDNKWNEMDGNAMENIH
Sbjct: 1   MAAKFEIEKFNGTNFSLWTLKMKVVLRNDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LALADNVLSSIKEKKI+KEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT
Sbjct: 61  LALADNVLSSIKEKKIAKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQL LLGYKIEPNERAELLLQSL DSYDQLVINL NNILIDYLSFDDVV+AVLEE
Sbjct: 121 LNTLFSQLALLGYKIEPNERAELLLQSLLDSYDQLVINLKNNILIDYLSFDDVVSAVLEE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           ENRRKNKEDKL+TLQQAEALTVTRGRPLE  +   + Q                      
Sbjct: 181 ENRRKNKEDKLITLQQAEALTVTRGRPLELAAKIKEGQS--------------------- 240

Query: 241 KKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRR 300
                  ++KDSNPQGNVASTINEGGALSCEAVTTTEG+KRMADGWFFDSGATYHMTSRR
Sbjct: 241 -------HEKDSNPQGNVASTINEGGALSCEAVTTTEGKKRMADGWFFDSGATYHMTSRR 300

Query: 301 EWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQ 360
           EWFHNYKPIS GSLFSCNDHALKIV IGTIKLKLHDN VCTIQQVRHVE+LKKNLL LGQ
Sbjct: 301 EWFHNYKPISGGSLFSCNDHALKIVDIGTIKLKLHDNIVCTIQQVRHVENLKKNLLLLGQ 360

Query: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLM 420
           LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSG+NLLM
Sbjct: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGENLLM 420

Query: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTS 461
           MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSL+FCEHCVT+
Sbjct: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLYFCEHCVTN 432

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BLAST of Cmc01g0024831 vs. NCBI nr
Match: BAD34493.1 (Gag-Pol [Ipomoea batatas])

HSP 1 Score: 679.9 bits (1753), Expect = 1.7e-191
Identity = 349/490 (71.22%), Postives = 407/490 (83.06%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MAAKFEIEKFN  NFSLW L  KA+LRKDNCL AI + P + TDD KW+EM+ +AM +++
Sbjct: 1   MAAKFEIEKFNGKNFSLWKLKVKAILRKDNCLAAISERPVDFTDDKKWSEMNEDAMADLY 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           L++AD VLSSI+EKK + EIWDHL +LYE KSLHNKIFLKRKLYTLRMSESTS+TEH+NT
Sbjct: 61  LSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT L  KIEP ERAELLLQSLPDSYDQL+INLTNNIL DYL FDDV AAVLEE
Sbjct: 121 LNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           E+RRKNKED+ V LQQAEALTV RGR  ER  S  +   RSKS SKKN+ CYNCGKKGHL
Sbjct: 181 ESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRG--RSKS-SKKNLTCYNCGKKGHL 240

Query: 241 KKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRR 300
           KK+CWNL  ++SNPQGNVAST ++G AL CEA    EGRKR AD W  DSGATYHMTSR+
Sbjct: 241 KKDCWNL-AQNSNPQGNVASTSDDGSALCCEASIAREGRKRFADIWLIDSGATYHMTSRK 300

Query: 301 EWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQ 360
           EWFH+Y+PIS GS++SC+DHAL+I+GIGTIKLK++D TV T+Q VRHV+ LKKNLLS G 
Sbjct: 301 EWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLSYGI 360

Query: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLM 420
           LD+   ++  +K + K+ +GALV+MKG K+ ANLYML+GETLQE EASVA+ S    LL 
Sbjct: 361 LDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAACSPDSTLL- 420

Query: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILEL 480
            WH KLGHMS+QG+K+LVEQ L+PGLTKVSL  CEHC+TSKQHRLKF+TS+SR KV+LEL
Sbjct: 421 -WHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLEL 480

Query: 481 VPSDVWQSPV 491
           V SDVWQ+PV
Sbjct: 481 VHSDVWQAPV 484

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BLAST of Cmc01g0024831 vs. NCBI nr
Match: KAE8686521.1 (Protein STRUBBELIG-RECEPTOR FAMILY 1 [Hibiscus syriacus])

HSP 1 Score: 672.9 bits (1735), Expect = 2.0e-189
Identity = 345/491 (70.26%), Postives = 400/491 (81.47%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           M  KF+IEKFN  NFSLW L  KA+LRKD CL AI++ P + TDDNKWNEMDGNAM N H
Sbjct: 1   MTTKFDIEKFNGRNFSLWKLKMKAILRKDGCLAAINERPVDFTDDNKWNEMDGNAMANFH 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LAL D VLSSI+EKK +KEIWDHLTKLYE  SLHNKIFLKRKLYTLRM ESTS+TEH+NT
Sbjct: 61  LALTDEVLSSIEEKKTAKEIWDHLTKLYEATSLHNKIFLKRKLYTLRMPESTSVTEHLNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT L  KI   ERAELLLQSLPDSYDQL+INLTN+  +  L FDDV AAVL+E
Sbjct: 121 LNTLFSQLTSLSCKIGEQERAELLLQSLPDSYDQLIINLTNS-NVTSLVFDDVAAAVLQE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           ENRRKNKED+ V LQQAEALT TRGR  ER  S S    RSKSRSKKN+KCY+CGKKGHL
Sbjct: 181 ENRRKNKEDRQVNLQQAEALTTTRGRSTERGQSSSHKYGRSKSRSKKNLKCYHCGKKGHL 240

Query: 241 KKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRR 300
           KK+CW+LN K+SNPQGN A+T ++G AL CEA TT +GRKR AD W  DSGATY+MTSRR
Sbjct: 241 KKDCWSLN-KNSNPQGNTANTSDDGDALCCEASTTVKGRKRFADIWLIDSGATYYMTSRR 300

Query: 301 EWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQ 360
           EWFH+Y+P+S GS++SCNDHAL+I+G+GTIKLK++D T+  ++ VRHV+ LKKNLLS G 
Sbjct: 301 EWFHHYEPVSGGSVYSCNDHALEIIGVGTIKLKMYDGTIKVVRDVRHVKGLKKNLLSYGL 360

Query: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLM 420
           LD+   K+   K + K+  GALV++KG K+ ANLYML+GETL E EASVAS SS  +  M
Sbjct: 361 LDNNASKIETRKGIMKVFHGALVVLKGEKITANLYMLKGETLLEAEASVASCSS--DSAM 420

Query: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILEL 480
           +WH KLGHMSE+G+KVLVEQ LLPGLT V+L  CE C+TSKQHRLKFNTS+SR K +LEL
Sbjct: 421 LWHQKLGHMSERGMKVLVEQKLLPGLTNVTLPLCEQCITSKQHRLKFNTSNSRGKSVLEL 480

Query: 481 VPSDVWQSPVT 492
           V SDVWQ+PVT
Sbjct: 481 VHSDVWQAPVT 487

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BLAST of Cmc01g0024831 vs. NCBI nr
Match: KAE8677858.1 (cytochrome P450 71A9-like [Hibiscus syriacus])

HSP 1 Score: 665.2 bits (1715), Expect = 4.3e-187
Identity = 345/494 (69.84%), Postives = 395/494 (79.96%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MA KF+IEKFN  NFSLW L  KA+LRKD CL AI + P +  DD KWNEMDGNAM N H
Sbjct: 1   MATKFDIEKFNGRNFSLWKLKMKAILRKDGCLAAISERPVDFADDIKWNEMDGNAMANFH 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LALAD VLSSI+EKK +KEIWDHLTKL+E  SLHNKIFLKRKLYTLRM ESTS+TEH+NT
Sbjct: 61  LALADEVLSSIEEKKTAKEIWDHLTKLFEATSLHNKIFLKRKLYTLRMPESTSVTEHLNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT L  KI   ER ELLLQSLPDSYDQL+INLTNN  +  L FDDV AAVL+E
Sbjct: 121 LNTLFSQLTSLSCKIGEQERVELLLQSLPDSYDQLIINLTNN-NVTSLVFDDVAAAVLQE 180

Query: 181 ENRRKNKEDKLVTLQQAEAL---TVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKK 240
           ENRRKNKED+ V LQQAEAL   T  RGR  ER  S S    RSKSRSKKN+KCYNCGKK
Sbjct: 181 ENRRKNKEDRQVNLQQAEALTTMTTMRGRSTERGQSSSHKHGRSKSRSKKNLKCYNCGKK 240

Query: 241 GHLKKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMT 300
           GHLK +CW+LN K+SNPQ N A+T ++G AL CEA TT EGRKR AD W  DSGA YHMT
Sbjct: 241 GHLKNDCWSLN-KNSNPQDNTANTSDDGDALCCEASTTVEGRKRFADIWLIDSGAIYHMT 300

Query: 301 SRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLS 360
           SRREWFH+Y+P+S GS++SCNDHAL+IVG+GTIKLK++D T+  ++ VRHV+ LKKNLLS
Sbjct: 301 SRREWFHHYEPVSGGSVYSCNDHALEIVGVGTIKLKMYDGTIKVVRDVRHVKGLKKNLLS 360

Query: 361 LGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKN 420
            G LD+   K+   K + K+ +GALV++KG K+ ANLYML+GETL E EASV S SS  +
Sbjct: 361 YGLLDNNASKIETRKGIMKVFRGALVVLKGEKIAANLYMLKGETLVEAEASVVSCSS--D 420

Query: 421 LLMMWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVI 480
             M+WH KLGHMSEQG+KV +EQ LLPGLTKVSL  CEHC+TSKQHRLKFNTS+SR K +
Sbjct: 421 SAMLWHQKLGHMSEQGMKVFMEQKLLPGLTKVSLPLCEHCITSKQHRLKFNTSNSRGKSV 480

Query: 481 LELVPSDVWQSPVT 492
           LELV SDVWQ+PVT
Sbjct: 481 LELVHSDVWQAPVT 490

[Close]

BLAST of Cmc01g0024831 vs. NCBI nr
Match: KAE8707674.1 (hypothetical protein F3Y22_tig00110377pilonHSYRG00029 [Hibiscus syriacus])

HSP 1 Score: 665.2 bits (1715), Expect = 4.3e-187
Identity = 345/493 (69.98%), Postives = 398/493 (80.73%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MA KF+IEKFN  NFSLW L  KA+LRKD CL AI++ P +  DD KWNEMDGNAM N H
Sbjct: 105 MATKFDIEKFNGRNFSLWKLKMKAILRKDGCLAAINERPVDFIDDIKWNEMDGNAMANFH 164

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LALAD VLSSI+EKK +KEIWDHL KLYE  SLHNKIFLKRKLYTLRM ESTS+TEH+NT
Sbjct: 165 LALADEVLSSIEEKKTAKEIWDHLIKLYEATSLHNKIFLKRKLYTLRMPESTSVTEHLNT 224

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT L  KI   ERAELLLQSLPDSYDQL+INLTN+  +  L FDDV AAVL+E
Sbjct: 225 LNTLFSQLTSLSCKIGEQERAELLLQSLPDSYDQLIINLTNS-NVTSLVFDDVAAAVLQE 284

Query: 181 ENRRKNKEDKLVTLQQAEAL---TVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKK 240
           ENRRKNKED+ V LQQAEAL   T  RGR  ER  S S    RSKSRSKKN+KCYNCGK 
Sbjct: 285 ENRRKNKEDRQVNLQQAEALTTMTTMRGRSTERGQSSSHKYGRSKSRSKKNLKCYNCGKN 344

Query: 241 GHLKKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMT 300
           GHLKK+CW+LN K+SNPQGN A+T ++G AL CEA TT EGRKR  D W  DSGATYHMT
Sbjct: 345 GHLKKDCWSLN-KNSNPQGNTANTSDDGDALCCEASTTVEGRKRFTDIWLIDSGATYHMT 404

Query: 301 SRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLS 360
           SRREWFH+Y+P+S GS++SCNDHAL+IVG+GTIKLK++D T+  ++ VRHV+ LKKNLLS
Sbjct: 405 SRREWFHHYEPVSGGSVYSCNDHALEIVGVGTIKLKMYDGTIKVVRDVRHVKGLKKNLLS 464

Query: 361 LGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKN 420
            G LD+   K+   K + K+ +GALV++KG+K+ ANLY+L+GETL E EAS+AS SS  +
Sbjct: 465 YGLLDNNASKIETRKGIMKVFRGALVVLKGKKISANLYILKGETLVEAEASLASCSS--D 524

Query: 421 LLMMWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVI 480
             M+WH KLGHMSEQG+KVLVEQ LL GLTKVSL  CEHC+TSKQHRLKFNTS+SR K +
Sbjct: 525 SAMLWHQKLGHMSEQGMKVLVEQKLLTGLTKVSLPLCEHCITSKQHRLKFNTSNSRGKSV 584

Query: 481 LELVPSDVWQSPV 491
           LELV SDVWQ+PV
Sbjct: 585 LELVHSDVWQAPV 593

[Close]

BLAST of Cmc01g0024831 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-59
Identity = 170/497 (34.21%), Postives = 258/497 (51.91%), Query Frame = 0


Query: 4   KFEIEKFNETN-FSLWTLNTKAVLRKDNCLEAID---KGPAEITDDNKWNEMDGNAMENI 63
           K+E+ KFN  N FS W    + +L +    + +D   K P  +  ++ W ++D  A   I
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAED-WADLDERAASAI 64

Query: 64  HLALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMN 123
            L L+D+V+++I ++  ++ IW  L  LY +K+L NK++LK++LY L MSE T+   H+N
Sbjct: 65  RLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLN 124

Query: 124 TLNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLE 183
             N L +QL  LG KIE  ++A LLL SLP SYD L   + +      +   DV +A+L 
Sbjct: 125 VFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTT--IELKDVTSALLL 184

Query: 184 EENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSG---SKNQRRSKSRSKKNIK-CYNCG 243
            E  RK  E+     Q    +T  RGR  +R+S+    S  + +SK+RSK  ++ CYNC 
Sbjct: 185 NEKMRKKPEN-----QGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCN 244

Query: 244 KKGHLKKNCWNLNKKDSNPQG-----NVASTI--NEGGALSCEAVTTTEGRKRMADGWFF 303
           + GH K++C N  K      G     N A+ +  N+   L                 W  
Sbjct: 245 QPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVV 304

Query: 304 DSGATYHMTSRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHV 363
           D+ A++H T  R+ F  Y     G++   N    KI GIG I +K +      ++ VRHV
Sbjct: 305 DTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHV 364

Query: 364 EDLKKNLLSLGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEAS 423
            DL+ NL+S   LD    +     +  +L KG+LV+ KG      LY    E  Q GE +
Sbjct: 365 PDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKG-VARGTLYRTNAEICQ-GELN 424

Query: 424 VASSSSGKNLLMMWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFN 483
            A      +L   WH ++GHMSE+GL++L +++L+      ++  C++C+  KQHR+ F 
Sbjct: 425 AAQDEISVDL---WHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQ 484

Query: 484 TSSSRSKVILELVPSDV 486
           TSS R   IL+LV SDV
Sbjct: 485 TSSERKLNILDLVYSDV 488

[Close]

BLAST of Cmc01g0024831 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 131.0 bits (328), Expect = 3.8e-29
Identity = 122/505 (24.16%), Postives = 242/505 (47.92%), Query Frame = 0


Query: 3   AKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAID-KGPAEITDDNKWNEMDGNAMENIHL 62
           AK  I+ F+   +++W    +A+L + + L+ +D   P E+  D+ W + +  A   I  
Sbjct: 4   AKRNIKPFDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEV--DDSWKKAERCAKSTIIE 63

Query: 63  ALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNTL 122
            L+D+ L+       +++I ++L  +YE KSL +++ L+++L +L++S   S+  H +  
Sbjct: 64  YLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIF 123

Query: 123 NTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEEE 182
           + L S+L   G KIE  ++   LL +LP  YD  +I     +  + L+   V   +L++E
Sbjct: 124 DELISELLAAGAKIEEMDKISHLLITLPSCYDG-IITAIETLSEENLTLAFVKNRLLDQE 183

Query: 183 NRRKNKEDKLVTLQQAEALTVTRGRPLERN---SSGSKNQRRSKSRSKKNIKCYNCGKKG 242
            + KN  +   + +   A+        + N   +  +K ++  K  SK  +KC++CG++G
Sbjct: 184 IKIKNDHND-TSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREG 243

Query: 243 HLKKNCWN----LNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATY 302
           H+KK+C++    LN K+   +  V +  + G A   + V  T        G+  DSGA+ 
Sbjct: 244 HIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNC--GFVLDSGASD 303

Query: 303 HMTSRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKN 362
           H+ +    + +   +      +       I       ++L ++   T++ V   ++   N
Sbjct: 304 HLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDHEITLEDVLFCKEAAGN 363

Query: 363 LLSLGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSS 422
           L+S+ +L +    +  +K    + K  L+++K   +  N+ ++  +       + + ++ 
Sbjct: 364 LMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNNVPVINFQ-------AYSINAK 423

Query: 423 GKNLLMMWHCKLGHMSEQGL------KVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFN 482
            KN   +WH + GH+S+  L       +  +Q+LL  L ++S   CE C+  KQ RL F 
Sbjct: 424 HKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNL-ELSCEICEPCLNGKQARLPFK 483

Query: 483 TSSSRS--KVILELVPSDVWQSPVT 492
               ++  K  L +V SDV   P+T
Sbjct: 484 QLKDKTHIKRPLFVVHSDVC-GPIT 493

[Close]

BLAST of Cmc01g0024831 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-22
Identity = 127/531 (23.92%), Postives = 216/531 (40.68%), Query Frame = 0


Query: 7   IEKFNETNFSLWTLNTKAVLRKDNCLEAIDKG----PAEITDD---------NKWNEMDG 66
           + K   TN+ +W+    A+         +D      PA I  D          +W   D 
Sbjct: 23  VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPPATIGTDAVPRVNPDYTRWRRQDK 82

Query: 67  NAMENIHLALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTS 126
                I  A++ +V  ++     + +IW+ L K+Y   S  +   L+             
Sbjct: 83  LIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLR------------- 142

Query: 127 MTEHMNTLNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDV 186
                    T F QL LLG  ++ +E+ E +L++LPD Y           +ID ++  D 
Sbjct: 143 -------FITRFDQLALLGKPMDHDEQVERVLENLPDDYKP---------VIDQIAAKDT 202

Query: 187 VAAVLEEENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQR-------------- 246
             ++ E   R  N+E KL+ L  AE + +T      RN++ ++NQ               
Sbjct: 203 PPSLTEIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNRNQNNRGDNRNYNNNNNR 262

Query: 247 -----------RSKSRSKKNI--KCYNCGKKGHLKKNCWNLNK-KDSNPQGNVASTINEG 306
                      RS +R  K    +C  C  +GH  K C  L++ + +  Q    S     
Sbjct: 263 SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPW 322

Query: 307 GALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRREWFHNYKPISRG-SLFSCNDHALKI 366
              +  AV +       A+ W  DSGAT+H+TS       ++P + G  +   +   + I
Sbjct: 323 QPRANLAVNSPYN----ANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPI 382

Query: 367 VGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQLDDLDCKVVVE----KRLTKLIKG 426
              G+  L     ++  + +V +V ++ KNL+S+ +L + + +V VE        K +  
Sbjct: 383 THTGSASLPTSSRSL-DLNKVLYVPNIHKNLISVYRLCNTN-RVSVEFFPASFQVKDLNT 442

Query: 427 ALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLMMWHCKLGHMSEQGLKVLVEQ 486
            + L++G+  D    + E         S+ +S   K     WH +LGH S   L  ++  
Sbjct: 443 GVPLLQGKTKDE---LYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISN 502

Query: 487 NLLPGLT-KVSLHFCEHCVTSKQHRLKFNTSSSRSKVILELVPSDVWQSPV 491
           + LP L     L  C  C  +K H++ F+ S+  S   LE + SDVW SP+
Sbjct: 503 HSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSSPI 515

[Close]

BLAST of Cmc01g0024831 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-21
Identity = 121/538 (22.49%), Postives = 214/538 (39.78%), Query Frame = 0


Query: 7   IEKFNETNFSLWTLNTKAVLRKDNCLEAIDKG----PAEITDD---------NKWNEMDG 66
           + K   TN+ +W+    A+         +D      PA I  D          +W   D 
Sbjct: 23  VTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPPATIGTDAAPRVNPDYTRWKRQDK 82

Query: 67  NAMENIHLALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTS 126
                +  A++ +V  ++     + +IW+ L K+Y   S  +   L+ +L        T 
Sbjct: 83  LIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKT- 142

Query: 127 MTEHMNTLNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDV 186
           + ++M  L T F QL LLG  ++ +E+ E +L++LP+ Y           +ID ++  D 
Sbjct: 143 IDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKP---------VIDQIAAKDT 202

Query: 187 VAAVLEEENRRKNKEDKLVTLQQAEALTVTRGRPLER-------NSSGSKNQRRSKSRSK 246
              + E   R  N E K++ +  A  + +T      R       N++G++N R     + 
Sbjct: 203 PPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNN 262

Query: 247 KNI----------------------KCYNCGKKGHLKKNCWNLNKKDSNPQGNVASTINE 306
            N                       KC  CG +GH  K C  L         +  S++N 
Sbjct: 263 NNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQ--------HFLSSVNS 322

Query: 307 GGALSCEAVTTTEGRKRMADG-------WFFDSGATYHMTSRREWFHNYKPISRG-SLFS 366
               S    T  + R  +A G       W  DSGAT+H+TS       ++P + G  +  
Sbjct: 323 QQPPS--PFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMV 382

Query: 367 CNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQL---DDLDCKVVVEKR 426
            +   + I   G+  L      +  +  + +V ++ KNL+S+ +L   + +  +      
Sbjct: 383 ADGSTIPISHTGSTSLSTKSRPL-NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASF 442

Query: 427 LTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLMMWHCKLGHMSEQG 486
             K +   + L++G+  D    + E         S+ +S S K     WH +LGH +   
Sbjct: 443 QVKDLNTGVPLLQGKTKDE---LYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSI 502

Query: 487 LKVLVEQNLLPGLTKVSLHF-CEHCVTSKQHRLKFNTSSSRSKVILELVPSDVWQSPV 491
           L  ++    L  L        C  C+ +K +++ F+ S+  S   LE + SDVW SP+
Sbjct: 503 LNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSSPI 536

[Close]

BLAST of Cmc01g0024831 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-15
Identity = 42/114 (36.84%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 376 KLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLMMWHCKLGHMSEQGLK 435
           K++KG   ++KG + D +LY+L+G +++ GE+++A ++  K+   +WH +L HMS++G++
Sbjct: 30  KVLKGCRTILKGNRHD-SLYILQG-SVETGESNLAETA--KDETRLWHSRLAHMSQRGME 89

Query: 436 VLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILELVPSDVWQSP 490
           +LV++  L      SL FCE C+  K HR+ F+T    +K  L+ V SD+W +P
Sbjct: 90  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAP 139

[Close]

BLAST of Cmc01g0024831 vs. ExPASy TrEMBL
Match: A0A5A7SNG9 (Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00680 PE=4 SV=1)

HSP 1 Score: 771.5 bits (1991), Expect = 2.0e-219
Identity = 401/460 (87.17%), Postives = 413/460 (89.78%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MAAKFEIEKFN TNFSLWTL  K VLR DNCLEAIDKGPAEITDDNKWNEMDGNAMENIH
Sbjct: 1   MAAKFEIEKFNGTNFSLWTLKMKVVLRNDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LALADNVLSSIKEKKI+KEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT
Sbjct: 61  LALADNVLSSIKEKKIAKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQL LLGYKIEPNERAELLLQSL DSYDQLVINL NNILIDYLSFDDVV+AVLEE
Sbjct: 121 LNTLFSQLALLGYKIEPNERAELLLQSLLDSYDQLVINLKNNILIDYLSFDDVVSAVLEE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           ENRRKNKEDKL+TLQQAEALTVTRGRPLE  +   + Q                      
Sbjct: 181 ENRRKNKEDKLITLQQAEALTVTRGRPLELAAKIKEGQS--------------------- 240

Query: 241 KKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRR 300
                  ++KDSNPQGNVASTINEGGALSCEAVTTTEG+KRMADGWFFDSGATYHMTSRR
Sbjct: 241 -------HEKDSNPQGNVASTINEGGALSCEAVTTTEGKKRMADGWFFDSGATYHMTSRR 300

Query: 301 EWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQ 360
           EWFHNYKPIS GSLFSCNDHALKIV IGTIKLKLHDN VCTIQQVRHVE+LKKNLL LGQ
Sbjct: 301 EWFHNYKPISGGSLFSCNDHALKIVDIGTIKLKLHDNIVCTIQQVRHVENLKKNLLLLGQ 360

Query: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLM 420
           LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSG+NLLM
Sbjct: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGENLLM 420

Query: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTS 461
           MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSL+FCEHCVT+
Sbjct: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLYFCEHCVTN 432

[Close]

BLAST of Cmc01g0024831 vs. ExPASy TrEMBL
Match: Q6BCY1 (Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1)

HSP 1 Score: 679.9 bits (1753), Expect = 8.1e-192
Identity = 349/490 (71.22%), Postives = 407/490 (83.06%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MAAKFEIEKFN  NFSLW L  KA+LRKDNCL AI + P + TDD KW+EM+ +AM +++
Sbjct: 1   MAAKFEIEKFNGKNFSLWKLKVKAILRKDNCLAAISERPVDFTDDKKWSEMNEDAMADLY 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           L++AD VLSSI+EKK + EIWDHL +LYE KSLHNKIFLKRKLYTLRMSESTS+TEH+NT
Sbjct: 61  LSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT L  KIEP ERAELLLQSLPDSYDQL+INLTNNIL DYL FDDV AAVLEE
Sbjct: 121 LNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           E+RRKNKED+ V LQQAEALTV RGR  ER  S  +   RSKS SKKN+ CYNCGKKGHL
Sbjct: 181 ESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRG--RSKS-SKKNLTCYNCGKKGHL 240

Query: 241 KKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRR 300
           KK+CWNL  ++SNPQGNVAST ++G AL CEA    EGRKR AD W  DSGATYHMTSR+
Sbjct: 241 KKDCWNL-AQNSNPQGNVASTSDDGSALCCEASIAREGRKRFADIWLIDSGATYHMTSRK 300

Query: 301 EWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQ 360
           EWFH+Y+PIS GS++SC+DHAL+I+GIGTIKLK++D TV T+Q VRHV+ LKKNLLS G 
Sbjct: 301 EWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLSYGI 360

Query: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLM 420
           LD+   ++  +K + K+ +GALV+MKG K+ ANLYML+GETLQE EASVA+ S    LL 
Sbjct: 361 LDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAACSPDSTLL- 420

Query: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILEL 480
            WH KLGHMS+QG+K+LVEQ L+PGLTKVSL  CEHC+TSKQHRLKF+TS+SR KV+LEL
Sbjct: 421 -WHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVVLEL 480

Query: 481 VPSDVWQSPV 491
           V SDVWQ+PV
Sbjct: 481 VHSDVWQAPV 484

[Close]

BLAST of Cmc01g0024831 vs. ExPASy TrEMBL
Match: A0A6A2Z3I3 (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111059pilonHSYRG00161 PE=4 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 9.9e-190
Identity = 345/491 (70.26%), Postives = 400/491 (81.47%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           M  KF+IEKFN  NFSLW L  KA+LRKD CL AI++ P + TDDNKWNEMDGNAM N H
Sbjct: 1   MTTKFDIEKFNGRNFSLWKLKMKAILRKDGCLAAINERPVDFTDDNKWNEMDGNAMANFH 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LAL D VLSSI+EKK +KEIWDHLTKLYE  SLHNKIFLKRKLYTLRM ESTS+TEH+NT
Sbjct: 61  LALTDEVLSSIEEKKTAKEIWDHLTKLYEATSLHNKIFLKRKLYTLRMPESTSVTEHLNT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT L  KI   ERAELLLQSLPDSYDQL+INLTN+  +  L FDDV AAVL+E
Sbjct: 121 LNTLFSQLTSLSCKIGEQERAELLLQSLPDSYDQLIINLTNS-NVTSLVFDDVAAAVLQE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           ENRRKNKED+ V LQQAEALT TRGR  ER  S S    RSKSRSKKN+KCY+CGKKGHL
Sbjct: 181 ENRRKNKEDRQVNLQQAEALTTTRGRSTERGQSSSHKYGRSKSRSKKNLKCYHCGKKGHL 240

Query: 241 KKNCWNLNKKDSNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSGATYHMTSRR 300
           KK+CW+LN K+SNPQGN A+T ++G AL CEA TT +GRKR AD W  DSGATY+MTSRR
Sbjct: 241 KKDCWSLN-KNSNPQGNTANTSDDGDALCCEASTTVKGRKRFADIWLIDSGATYYMTSRR 300

Query: 301 EWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDLKKNLLSLGQ 360
           EWFH+Y+P+S GS++SCNDHAL+I+G+GTIKLK++D T+  ++ VRHV+ LKKNLLS G 
Sbjct: 301 EWFHHYEPVSGGSVYSCNDHALEIIGVGTIKLKMYDGTIKVVRDVRHVKGLKKNLLSYGL 360

Query: 361 LDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLM 420
           LD+   K+   K + K+  GALV++KG K+ ANLYML+GETL E EASVAS SS  +  M
Sbjct: 361 LDNNASKIETRKGIMKVFHGALVVLKGEKITANLYMLKGETLLEAEASVASCSS--DSAM 420

Query: 421 MWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILEL 480
           +WH KLGHMSE+G+KVLVEQ LLPGLT V+L  CE C+TSKQHRLKFNTS+SR K +LEL
Sbjct: 421 LWHQKLGHMSERGMKVLVEQKLLPGLTNVTLPLCEQCITSKQHRLKFNTSNSRGKSVLEL 480

Query: 481 VPSDVWQSPVT 492
           V SDVWQ+PVT
Sbjct: 481 VHSDVWQAPVT 487

[Close]

BLAST of Cmc01g0024831 vs. ExPASy TrEMBL
Match: A0A2N9GLP2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28056 PE=4 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 1.2e-187
Identity = 343/499 (68.74%), Postives = 402/499 (80.56%), Query Frame = 0


Query: 1   MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
           MA K+EIEKFN +NFSLW +  KAVLRKDNCL AI   P EITDD KWNEMDGNA+ N+H
Sbjct: 1   MATKYEIEKFNGSNFSLWKMRIKAVLRKDNCLAAIGDRPDEITDDGKWNEMDGNAIANLH 60

Query: 61  LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
           LALAD VLSS+ EKK +KEIWD LTKLYE KSLHNKIFL+R+LYTLRM EST +T+H+NT
Sbjct: 61  LALADGVLSSVAEKKTAKEIWDTLTKLYEAKSLHNKIFLRRRLYTLRMMESTMVTDHINT 120

Query: 121 LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
           LNTLFSQLT +G+ IE  ERAE+LLQSLPDSYDQL+INLTNN  I+ L FDD+ AAVLEE
Sbjct: 121 LNTLFSQLTAMGHNIETGERAEILLQSLPDSYDQLIINLTNN--IEVLVFDDIAAAVLEE 180

Query: 181 ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
           E+RRK+KED+L   QQAEALT+TRGR  ER  SGS+NQ RSKSRSKKN+KC++CGKKGH 
Sbjct: 181 ESRRKSKEDRLGGSQQAEALTMTRGRSTERGPSGSQNQSRSKSRSKKNVKCHHCGKKGHY 240

Query: 241 KKNCWNLNKKD---------SNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSG 300
           K+ CW+L K +         S  QG VAST ++G  L  EA T TEGR+R AD W  DSG
Sbjct: 241 KRECWHLKKNEEAKGKGPESSKAQGCVASTSDDGEILYSEATTVTEGRRRFADVWLMDSG 300

Query: 301 ATYHMTSRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDL 360
           AT+HMT RREWFH Y+PIS GS+F  +DHAL+I GIGTIKLK+ D  V TIQ+VRHV+ L
Sbjct: 301 ATWHMTPRREWFHQYEPISGGSVFMGDDHALEIAGIGTIKLKMCDGMVRTIQEVRHVKGL 360

Query: 361 KKNLLSLGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVAS 420
           KKNLLSLGQLD+  CK  ++  + K++KGALV+MK  K+ ANLYML+G+T QEGEAS A 
Sbjct: 361 KKNLLSLGQLDNNGCKTHIQNGIMKIVKGALVMMKAEKIAANLYMLKGKTQQEGEASTAL 420

Query: 421 SSSGKNLLMMWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSS 480
           +SS + L MMWH KLGHMSE+GLK+L EQ LLPGL KVSL FCEHCVTSKQHRLKF++SS
Sbjct: 421 ASSAEELTMMWHRKLGHMSERGLKILAEQKLLPGLKKVSLPFCEHCVTSKQHRLKFSSSS 480

Query: 481 SRSKVILELVPSDVWQSPV 491
           +RSK ILEL+ SDVWQ+PV
Sbjct: 481 ARSKAILELIHSDVWQAPV 497

[Close]

BLAST of Cmc01g0024831 vs. ExPASy TrEMBL
Match: A0A2N9IUS6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57029 PE=4 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 1.2e-187
Identity = 343/499 (68.74%), Postives = 402/499 (80.56%), Query Frame = 0


Query: 1    MAAKFEIEKFNETNFSLWTLNTKAVLRKDNCLEAIDKGPAEITDDNKWNEMDGNAMENIH 60
            MA K+EIEKFN +NFSLW +  KAVLRKDNCL AI   P EITDD KWNEMDGNA+ N+H
Sbjct: 1083 MATKYEIEKFNGSNFSLWKMRIKAVLRKDNCLAAIGDRPDEITDDGKWNEMDGNAIANLH 1142

Query: 61   LALADNVLSSIKEKKISKEIWDHLTKLYETKSLHNKIFLKRKLYTLRMSESTSMTEHMNT 120
            LALAD VLSS+ EKK +KEIWD LTKLYE KSLHNKIFL+R+LYTLRM EST +T+H+NT
Sbjct: 1143 LALADGVLSSVAEKKTAKEIWDTLTKLYEAKSLHNKIFLRRRLYTLRMMESTMVTDHINT 1202

Query: 121  LNTLFSQLTLLGYKIEPNERAELLLQSLPDSYDQLVINLTNNILIDYLSFDDVVAAVLEE 180
            LNTLFSQLT +G+ IE  ERAE+LLQSLPDSYDQL+INLTNN  I+ L FDD+ AAVLEE
Sbjct: 1203 LNTLFSQLTAMGHNIETGERAEILLQSLPDSYDQLIINLTNN--IEVLVFDDIAAAVLEE 1262

Query: 181  ENRRKNKEDKLVTLQQAEALTVTRGRPLERNSSGSKNQRRSKSRSKKNIKCYNCGKKGHL 240
            E+RRK+KED+L   QQAEALT+TRGR  ER  SGS+NQ RSKSRSKKN+KC++CGKKGH 
Sbjct: 1263 ESRRKSKEDRLGGSQQAEALTMTRGRSTERGPSGSQNQSRSKSRSKKNVKCHHCGKKGHY 1322

Query: 241  KKNCWNLNKKD---------SNPQGNVASTINEGGALSCEAVTTTEGRKRMADGWFFDSG 300
            K+ CW+L K +         S  QG VAST ++G  L  EA T TEGR+R AD W  DSG
Sbjct: 1323 KRECWHLKKNEEAKGKGPESSKAQGCVASTSDDGEILYSEATTVTEGRRRFADVWLMDSG 1382

Query: 301  ATYHMTSRREWFHNYKPISRGSLFSCNDHALKIVGIGTIKLKLHDNTVCTIQQVRHVEDL 360
            AT+HMT RREWFH Y+PIS GS+F  +DHAL+I GIGTIKLK+ D  V TIQ+VRHV+ L
Sbjct: 1383 ATWHMTPRREWFHQYEPISGGSVFMGDDHALEIAGIGTIKLKMCDGMVRTIQEVRHVKGL 1442

Query: 361  KKNLLSLGQLDDLDCKVVVEKRLTKLIKGALVLMKGRKVDANLYMLEGETLQEGEASVAS 420
            KKNLLSLGQLD+  CK  ++  + K++KGALV+MK  K+ ANLYML+G+T QEGEAS A 
Sbjct: 1443 KKNLLSLGQLDNNGCKTHIQNGIMKIVKGALVMMKAEKIAANLYMLKGKTQQEGEASTAL 1502

Query: 421  SSSGKNLLMMWHCKLGHMSEQGLKVLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSS 480
            +SS + L MMWH KLGHMSE+GLK+L EQ LLPGL KVSL FCEHCVTSKQHRLKF++SS
Sbjct: 1503 ASSAEELTMMWHRKLGHMSERGLKILAEQKLLPGLKKVSLPFCEHCVTSKQHRLKFSSSS 1562

Query: 481  SRSKVILELVPSDVWQSPV 491
            +RSK ILEL+ SDVWQ+PV
Sbjct: 1563 ARSKAILELIHSDVWQAPV 1579

[Close]

BLAST of Cmc01g0024831 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-16
Identity = 42/114 (36.84%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 376 KLIKGALVLMKGRKVDANLYMLEGETLQEGEASVASSSSGKNLLMMWHCKLGHMSEQGLK 435
           K++KG   ++KG + D +LY+L+G +++ GE+++A ++  K+   +WH +L HMS++G++
Sbjct: 30  KVLKGCRTILKGNRHD-SLYILQG-SVETGESNLAETA--KDETRLWHSRLAHMSQRGME 89

Query: 436 VLVEQNLLPGLTKVSLHFCEHCVTSKQHRLKFNTSSSRSKVILELVPSDVWQSP 490
           +LV++  L      SL FCE C+  K HR+ F+T    +K  L+ V SD+W +P
Sbjct: 90  LLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAP 139

[Close]

BLAST of Cmc01g0024831 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 50.8 bits (120), Expect = 3.6e-06
Identity = 67/254 (26.38%), Postives = 102/254 (40.16%), Query Frame = 0


Query: 36  DKGPAEIT----DDNKWNEMDGNAMENIHLALADNVLSSIKEK-KISKEIWDHLTKLYET 95
           +  P EIT       KW   D     ++  +L+D++     +K K +KE+WD L  +Y+ 
Sbjct: 237 ETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQC 296

Query: 96  KSLHNKIFLKRKLYTLRMSESTSMTEHMNTLNTLFSQLTLLGYKIEPNERAELLLQSLPD 155
               +K    RK    RM E   + E +   N +   +   G  ++       ++   P 
Sbjct: 297 DESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPP 356

Query: 156 SYDQLVINLTNNILIDYLSFDDVVAAVLEEENRRKNKEDKLVTLQQAEALTVTRGRPLER 215
           S+      L      +YL    ++  V  EE   +N   K VT + A     T    +ER
Sbjct: 357 SWRGFCTRLMEE---EYLPVWMLMERVKAEEELLRNGA-KGVTYRPA-----TGSSQMER 416

Query: 216 NSSGSKNQRRSKSRSKKN----------IKCYNCGKKGHLKKNCWNLNKKDSNPQGNVAS 275
             S     R S+S   K           I C NCG+KGHL K+CW  +K D    G  ++
Sbjct: 417 TPSLGTTHRGSQSVGWKRKEPERDERVIIVCDNCGRKGHLAKHCWG-SKSDERASGK-SN 476

The following BLAST results are available for this feature:

BLAST of Cmc01g0024831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026163.1	4.2e-219	87.17	Gag-Pol [Cucumis melo var. makuwa] >TYK11620.1 Gag-Pol [Cucumis melo var. makuwa...	[more]
BAD34493.1	1.7e-191	71.22	Gag-Pol [Ipomoea batatas]	[more]
KAE8686521.1	2.0e-189	70.26	Protein STRUBBELIG-RECEPTOR FAMILY 1 [Hibiscus syriacus]	[more]
KAE8677858.1	4.3e-187	69.84	cytochrome P450 71A9-like [Hibiscus syriacus]	[more]
KAE8707674.1	4.3e-187	69.98	hypothetical protein F3Y22_tig00110377pilonHSYRG00029 [Hibiscus syriacus]	[more]

BLAST of Cmc01g0024831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.6e-59	34.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.8e-29	24.16	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.6e-22	23.92	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.5e-21	22.49	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P93293	4.1e-15	36.84	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc01g0024831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNG9	2.0e-219	87.17	Gag-Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00680 PE=4 S...	[more]
Q6BCY1	8.1e-192	71.22	Gag-Pol OS=Ipomoea batatas OX=4120 GN=Rtsp-1AA PE=4 SV=1	[more]
A0A6A2Z3I3	9.9e-190	70.26	Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig...	[more]
A0A2N9GLP2	1.2e-187	68.74	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28056 PE=4 SV=1	[more]
A0A2N9IUS6	1.2e-187	68.74	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57029 PE=4 SV=1	[more]

BLAST of Cmc01g0024831 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	2.9e-16	36.84	Gag-Pol-related retrotransposon family protein	[more]
AT4G00980.1	3.6e-06	26.38	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 48..187 e-value: 2.4E-33 score: 114.8
None	No IPR available	GENE3D	4.10.60.10		coord: 200..258 e-value: 6.9E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..227
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..237
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..237
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 230..246 e-value: 3.1E-4 score: 30.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 229..244 e-value: 6.3E-5 score: 22.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 230..244 score: 10.707618
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 393..462 e-value: 9.3E-17 score: 60.7
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 212..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0024831.1	Cmc01g0024831.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006508	proteolysis
biological_process	GO:0048544	recognition of pollen
cellular_component	GO:0016020	membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004714	transmembrane receptor protein tyrosine kinase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding