Cmc01g0024561 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0024561
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Accelerated cell death 11
Location	CMiso1.1chr01: 25052857 .. 25054389 (-)
RNA-Seq Expression	Cmc01g0024561
Synteny	Cmc01g0024561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGGTTCTTCAGGGTTGTGGTAACACGTTGGACAAGCTTGTCAGGGAGTTGTCTTTGCTTATTGGACTTTTTGTTGTATTCTTTGTTAAAAGGTAGAGCAAGATCTGGACCATATTCTTTGGCATTGTGTCTTCGTGAGTGGTGTCTGGGATTCTTTCTTCCAAGCATTTCGTATATGATGAGTGTTCATCATAAAGATGTCAGTGCTATGATCAAGGAGTTCCTCCTCAATCTGCTTTATGAGGAGAAGGCTAGTTGCATTGGCTTGTTATGGTGTATGGTTTTATCGATTTGTGGGGTGAGCAGAACAATAGTGTTTAGGTGAGTGGAAAGGGATCCTAGGGAGCTTTGGTCCTTTGTTCGTTTTCATGTTTTCCTTTGGGCTTTGATTTCAAAGACTTTATAATCATTGTGTTATTTCATGGTTGGAATCTTTTTTTGTAAATGGAGTCCCTTTTTTTGTGGGTTTAATTTTTGTATGCCTGTGTATTCTTTCACTTTTGTTTCTCATTGGTAGTTTGTTATTTTCTTCAAACAAAGAAAAATCAAGTTCATCTTCTCCATTTTTCACTAGGCCAACCCATGATGGTTTCATCATTCACAAATCACAATCATATCTATAAAAACATGATTAGTAATTACAATGTAATATTTCCACATCTACCATCCTTATGATTTTTTTTTTTTTGGAATCTTTGGGGAATGCAACGACCTCTTTTCCTAGACCTTTTCTTCTTTTGCACCCTTTTGATAATTATAGTATATCTTTTTAAAACTCCAATTGGAGGTCTTTGTTTTAATCACATGTTTGGGGTTTTCTCCTTATTTCATTTATGAATAAAATGGTTTTTTTACGAAAAAAAGAAAAAAAATCATCCTCTGATTTAATTTGGTCGCAAACATGTTGAACAATAGTTCCTGATAATGGCAGAGGCAATTCGTTGAGAGATCCAGCTTCAAAAGCATATGCACAGGTATTTGCTCCTCACCATGGGTGGGCTATCAGAAAAGCTGTTGGGGCAGGGATGTATGCTCTTCCTACAAAGGCTCAATTACTAAGCAAGCTCAATGAAGATGAAGCCTCAGCCAGAATTCTGATGCAAGATTATGTGGCTGCTTCTGCTCCTGTGATTCAGTATGTTGAAAAGCTCTTCTTCTCCAGAGATTTGGGCGTCGATTGGTAATATATCAACTACATATTATTATCTAAATACTTTGAGCCCTGTATATGTAATCTATTAATGTTTCTTGGCCCCTCACCCAGAAAAGAAAGAAGAAAAAATAAAAATGCAATCAACTAGAAATCTTTCTCTTGGCTTTTATTGAACTATTTGTATCTTGGAGCGTTGGCCTCTTTCCATTAAGATTGAAAAAGAAAAAAAGGGAAAATAATGCCATGGATCATAATCACTTTGAAATGTGAGTGAATCTCCTTAAGAAATTTCTAAAGAGTATTATTTGTGACTAACCGAAAGAATTTATTTGTTATTTGGATTTGGAGCTTATCGTATAGTTTGAAGTTTGTTGTTGAA

mRNA sequence

GCAGGTTCTTCAGGGTTGTGGTAACACGTTGGACAAGCTTGTCAGGGAGTTGTCTTTGCTTATTGGACTTTTTGTTGTATTCTTTGTTAAAAGGTAGAGCAAGATCTGGACCATATTCTTTGGCATTGTGTCTTCGTGAGTGGTGTCTGGGATTCTTTCTTCCAAGCATTTCGTATATGATGAGTGTTCATCATAAAGATGTCAGTGCTATGATCAAGGAGTTCCTCCTCAATCTGCTTTATGAGGAGAAGGCTAGTTGCATTGGCTTGTTATGGTGTATGGTTTTATCGATTTGTGGGGTGAGCAGAACAATAGTGTTTAGGTGAGTGGAAAGGGATCCTAGGGAGCTTTGGTCCTTTGTTCGTTTTCATGTTTTCCTTTGGGCTTTGATTTCAAAGACTTTATAATCATTGTGTTATTTCATGGTTGGAATCTTTTTTTGTAAATGGAGTCCCTTTTTTTGTGGGTTTAATTTTTGTATGCCTGTGTATTCTTTCACTTTTGTTTCTCATTGGTAGTTTGTTATTTTCTTCAAACAAAGAAAAATCAAGTTCATCTTCTCCATTTTTCACTAGGCCAACCCATGATGGTTTCATCATTCACAAATCACAATCATATCTATAAAAACATGATTAGTAATTACAATGTAATATTTCCACATCTACCATCCTTATGATTTTTTTTTTTTTGGAATCTTTGGGGAATGCAACGACCTCTTTTCCTAGACCTTTTCTTCTTTTGCACCCTTTTGATAATTATAGTATATCTTTTTAAAACTCCAATTGGAGGTCTTTGTTTTAATCACATGTTTGGGGTTTTCTCCTTATTTCATTTATGAATAAAATGGTTTTTTTACGAAAAAAAGAAAAAAAATCATCCTCTGATTTAATTTGGTCGCAAACATGTTGAACAATAGTTCCTGATAATGGCAGAGGCAATTCGTTGAGAGATCCAGCTTCAAAAGCATATGCACAGGTATTTGCTCCTCACCATGGGTGGGCTATCAGAAAAGCTGTTGGGGCAGGGATGTATGCTCTTCCTACAAAGGCTCAATTACTAAGCAAGCTCAATGAAGATGAAGCCTCAGCCAGAATTCTGATGCAAGATTATGTGGCTGCTTCTGCTCCTGTGATTCAGTATGTTGAAAAGCTCTTCTTCTCCAGAGATTTGGGCGTCGATTGGTAATATATCAACTACATATTATTATCTAAATACTTTGAGCCCTGTATATGTAATCTATTAATGTTTCTTGGCCCCTCACCCAGAAAAGAAAGAAGAAAAAATAAAAATGCAATCAACTAGAAATCTTTCTCTTGGCTTTTATTGAACTATTTGTATCTTGGAGCGTTGGCCTCTTTCCATTAAGATTGAAAAAGAAAAAAAGGGAAAATAATGCCATGGATCATAATCACTTTGAAATGTGAGTGAATCTCCTTAAGAAATTTCTAAAGAGTATTATTTGTGACTAACCGAAAGAATTTATTTGTTATTTGGATTTGGAGCTTATCGTATAGTTTGAAGTTTGTTGTTGAA

Coding sequence (CDS)

ATGTATGCTCTTCCTACAAAGGCTCAATTACTAAGCAAGCTCAATGAAGATGAAGCCTCAGCCAGAATTCTGATGCAAGATTATGTGGCTGCTTCTGCTCCTGTGATTCAGTATGTTGAAAAGCTCTTCTTCTCCAGAGATTTGGGCGTCGATTGGTAA

Protein sequence

MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW

Homology

[Close]

BLAST of Cmc01g0024561 vs. NCBI nr
Match: XP_008458024.1 (PREDICTED: accelerated cell death 11 [Cucumis melo] >XP_008458025.1 PREDICTED: accelerated cell death 11 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW
Sbjct: 153 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 204

[Close]

BLAST of Cmc01g0024561 vs. NCBI nr
Match: KAA0026200.1 (accelerated cell death 11 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW
Sbjct: 153 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 204

[Close]

BLAST of Cmc01g0024561 vs. NCBI nr
Match: TYK30758.1 (accelerated cell death 11 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW
Sbjct: 327 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 378

[Close]

BLAST of Cmc01g0024561 vs. NCBI nr
Match: XP_038899583.1 (accelerated cell death 11 [Benincasa hispida] >XP_038899584.1 accelerated cell death 11 [Benincasa hispida] >XP_038899585.1 accelerated cell death 11 [Benincasa hispida] >XP_038899586.1 accelerated cell death 11 [Benincasa hispida])

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLG+DW
Sbjct: 154 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGIDW 205

[Close]

BLAST of Cmc01g0024561 vs. NCBI nr
Match: XP_004139630.1 (accelerated cell death 11 [Cucumis sativus] >XP_011659189.1 accelerated cell death 11 [Cucumis sativus] >XP_031744749.1 accelerated cell death 11 [Cucumis sativus] >XP_031744750.1 accelerated cell death 11 [Cucumis sativus] >KGN44602.1 hypothetical protein Csa_015669 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTK QLLSKL EDEASARILMQDYVAASAPVIQYVEKLFFSRDLG+DW
Sbjct: 153 MYALPTKGQLLSKLKEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGIDW 204

[Close]

BLAST of Cmc01g0024561 vs. ExPASy Swiss-Prot
Match: O64587 (Accelerated cell death 11 OS=Arabidopsis thaliana OX=3702 GN=ACD11 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-12
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPT+A LL+ L EDEA+A+I MQ YV +SAP+I Y++ LF S+ LG+DW
Sbjct: 155 MYALPTRAHLLNMLKEDEAAAKIHMQSYVNSSAPLITYLDNLFLSKQLGIDW 206

[Close]

BLAST of Cmc01g0024561 vs. ExPASy Swiss-Prot
Match: Q8L7U7 (ACD11 homolog protein OS=Arabidopsis thaliana OX=3702 GN=At4g39670 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-08
Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MY LPT+ QLL +LNE + S    M+ Y+ AS P+I+Y++KL+  R++ +DW
Sbjct: 178 MYTLPTRDQLLLRLNETDQSVEKNMRRYMEASRPIIEYIDKLYIERNIKLDW 229

[Close]

BLAST of Cmc01g0024561 vs. ExPASy TrEMBL
Match: A0A1S3C6E5 (accelerated cell death 11 OS=Cucumis melo OX=3656 GN=LOC103497566 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW
Sbjct: 153 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 204

[Close]

BLAST of Cmc01g0024561 vs. ExPASy TrEMBL
Match: A0A5D3E4L3 (Accelerated cell death 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G001000 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW
Sbjct: 327 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 378

[Close]

BLAST of Cmc01g0024561 vs. ExPASy TrEMBL
Match: A0A5A7SJ29 (Accelerated cell death 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G001690 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW
Sbjct: 153 MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 204

[Close]

BLAST of Cmc01g0024561 vs. ExPASy TrEMBL
Match: A0A0A0K8C3 (GLTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G341220 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPTK QLLSKL EDEASARILMQDYVAASAPVIQYVEKLFFSRDLG+DW
Sbjct: 153 MYALPTKGQLLSKLKEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGIDW 204

[Close]

BLAST of Cmc01g0024561 vs. ExPASy TrEMBL
Match: A0A6J1ID13 (accelerated cell death 11 OS=Cucurbita maxima OX=3661 GN=LOC111472696 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.7e-18
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALP+KAQLL KLNEDEASARI MQDYVAASAPVIQYVEKLFFSRDLG+DW
Sbjct: 155 MYALPSKAQLLKKLNEDEASARIFMQDYVAASAPVIQYVEKLFFSRDLGIDW 206

[Close]

BLAST of Cmc01g0024561 vs. TAIR 10
Match: AT2G34690.1 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MYALPT+A LL+ L EDEA+A+I MQ YV +SAP+I Y++ LF S+ LG+DW
Sbjct: 155 MYALPTRAHLLNMLKEDEAAAKIHMQSYVNSSAPLITYLDNLFLSKQLGIDW 206

[Close]

BLAST of Cmc01g0024561 vs. TAIR 10
Match: AT4G39670.1 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-09
Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 1   MYALPTKAQLLSKLNEDEASARILMQDYVAASAPVIQYVEKLFFSRDLGVDW 53
           MY LPT+ QLL +LNE + S    M+ Y+ AS P+I+Y++KL+  R++ +DW
Sbjct: 178 MYTLPTRDQLLLRLNETDQSVEKNMRRYMEASRPIIEYIDKLYIERNIKLDW 229

The following BLAST results are available for this feature:

BLAST of Cmc01g0024561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458024.1	2.4e-19	100.00	PREDICTED: accelerated cell death 11 [Cucumis melo] >XP_008458025.1 PREDICTED: a...	[more]
KAA0026200.1	2.4e-19	100.00	accelerated cell death 11 [Cucumis melo var. makuwa]	[more]
TYK30758.1	2.4e-19	100.00	accelerated cell death 11 [Cucumis melo var. makuwa]	[more]
XP_038899583.1	3.1e-19	98.08	accelerated cell death 11 [Benincasa hispida] >XP_038899584.1 accelerated cell d...	[more]
XP_004139630.1	4.4e-18	94.23	accelerated cell death 11 [Cucumis sativus] >XP_011659189.1 accelerated cell dea...	[more]

BLAST of Cmc01g0024561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64587	3.8e-12	61.54	Accelerated cell death 11 OS=Arabidopsis thaliana OX=3702 GN=ACD11 PE=1 SV=1	[more]
Q8L7U7	7.4e-08	46.15	ACD11 homolog protein OS=Arabidopsis thaliana OX=3702 GN=At4g39670 PE=2 SV=1	[more]

BLAST of Cmc01g0024561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6E5	1.1e-19	100.00	accelerated cell death 11 OS=Cucumis melo OX=3656 GN=LOC103497566 PE=4 SV=1	[more]
A0A5D3E4L3	1.1e-19	100.00	Accelerated cell death 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7SJ29	1.1e-19	100.00	Accelerated cell death 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0K8C3	2.1e-18	94.23	GLTP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G341220 PE=4 S...	[more]
A0A6J1ID13	3.7e-18	92.31	accelerated cell death 11 OS=Cucurbita maxima OX=3661 GN=LOC111472696 PE=4 SV=1	[more]

BLAST of Cmc01g0024561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34690.1	2.7e-13	61.54	Glycolipid transfer protein (GLTP) family protein	[more]
AT4G39670.1	5.2e-09	46.15	Glycolipid transfer protein (GLTP) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036497	Glycolipid transfer protein superfamily	GENE3D	1.10.3520.10	Glycolipid transfer protein	coord: 1..52 e-value: 4.9E-11 score: 44.6
IPR036497	Glycolipid transfer protein superfamily	SUPERFAMILY	110004	Glycolipid transfer protein, GLTP	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0024561.1	Cmc01g0024561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902389	ceramide 1-phosphate transport
biological_process	GO:0120009	intermembrane lipid transfer
cellular_component	GO:0005829	cytosol
molecular_function	GO:1902387	ceramide 1-phosphate binding
molecular_function	GO:1902388	ceramide 1-phosphate transfer activity