Cmc01g0024361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0024361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr01: 24824239 .. 24824709 (+)
RNA-Seq Expression	Cmc01g0024361
Synteny	Cmc01g0024361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAAGTCAATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACATCCTTTTTGAATGGTAATCTTAAAGAGAGCATTTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAAGGTTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACGAAAGGATCATCAAAACTACTATAGCATTCTTAGTTCTGTATTTAGATGACATTCTACTCATTGGGAATGATATAGGTCATCTAACTGATATTAAGGAATGGCTAGCTACGCAATTCCAAATGAAAGATGTTCTTGGTATCCAAATAGTTCGAAACCGAATAGTTCGAACCGAAAGAACAAAACTCTAG

mRNA sequence

ATGATAAAGTCAATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACATCCTTTTTGAATGGTAATCTTAAAGAGAGCATTTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAAGGTTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACGAAAGGATCATCAAAACTACTATAGCATTCTTAGTTCTGTATTTAGATGACATTCTACTCATTGGGAATGATATAGGTCATCTAACTGATATTAAGGAATGGCTAGCTACGCAATTCCAAATGAAAGATGTTCTTGGTATCCAAATAGTTCGAAACCGAATAGTTCGAACCGAAAGAACAAAACTCTAG

Coding sequence (CDS)

ATGATAAAGTCAATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACATCCTTTTTGAATGGTAATCTTAAAGAGAGCATTTATATGGTCCAACCAGAGGGGTTTATACAAAAGGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAAGGTTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACGAAAGGATCATCAAAACTACTATAGCATTCTTAGTTCTGTATTTAGATGACATTCTACTCATTGGGAATGATATAGGTCATCTAACTGATATTAAGGAATGGCTAGCTACGCAATTCCAAATGAAAGATGTTCTTGGTATCCAAATAGTTCGAAACCGAATAGTTCGAACCGAAAGAACAAAACTCTAG

Protein sequence

MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIGHLTDIKEWLATQFQMKDVLGIQIVRNRIVRTERTKL

Homology

[Close]

BLAST of Cmc01g0024361 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 9.7e-69
Identity = 135/157 (85.99%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIRILLSIATFYDYEIWQMDVKT+FLNGNL+ESIYMVQPEGFIQKGQEQKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVY+RII +T+AFLVLY+DDILLIGN++ 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           HLTDIKEWL TQFQMKD      VLGIQIV+NR  +T
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKT 380

[Close]

BLAST of Cmc01g0024361 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 9.1e-67
Identity = 127/157 (80.89%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIRILLSIATFYDYEIWQ+DVKT+FLNGNL+ESIYM QPEGFI+KGQEQK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRSWNIRFDTAIKSYGFEQNVD+PCVY++++ + +AFLVLY+DDILL+GND+G
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           +LTDIK+WLATQFQMKD      VLGIQIVRNR  RT
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRT 157

[Close]

BLAST of Cmc01g0024361 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 130/157 (82.80%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIRILLSIATFYDYEIWQMDVKT+FLN NL+ESIYMVQPE FIQKGQEQK+CKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRS NIRFDTAIKSYG EQNVDEPCVY+RI+ +T+AFLVLY+DDILLIGND+G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           HL DIK+WLA QFQMKD      VLG+QIVRNR  +T
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKT 474

[Close]

BLAST of Cmc01g0024361 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 125/157 (79.62%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
            M+KSIRILLSIATFY+YEIWQMDVKT+FLNGNL+ESIYMVQPEGFI + QEQKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
            IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVY++I+ + +AFL+LY+DDILLIGND+ 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
            +LTD+K+WL TQFQMKD      +LGIQIVRNR  +T
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKT 1050

[Close]

BLAST of Cmc01g0024361 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-63
Identity = 124/157 (78.98%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIRILLSIATFYDYEIWQMDVKT+FLNGNL+ESI+M QPEGFI +GQEQKVCKL +S
Sbjct: 412 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRSWNIRFDTAIKSYGF+QNVDEPCVY++I K  +AFLVLY+DDILLIGND+G
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 531

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           +LTD+K WLA QFQMKD      VLGIQI+R+R  +T
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 568

[Close]

BLAST of Cmc01g0024361 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.4e-32
Identity = 72/154 (46.75%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 4    SIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKSIYG 63
            SIR +LS+A   D E+ Q+DVKT+FL+G+L+E IYM QPEGF   G++  VCKL KS+YG
Sbjct: 903  SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 962

Query: 64   LKQASRSWNIRFDTAIKSYGFEQNVDEPCVY-ERIIKTTIAFLVLYLDDILLIGNDIGHL 123
            LKQA R W ++FD+ +KS  + +   +PCVY +R  +     L+LY+DD+L++G D G +
Sbjct: 963  LKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLI 1022

Query: 124  TDIKEWLATQFQMKD------VLGIQIVRNRIVR 151
              +K  L+  F MKD      +LG++IVR R  R
Sbjct: 1023 AKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSR 1056

[Close]

BLAST of Cmc01g0024361 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.3e-22
Identity = 52/134 (38.81%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 4    SIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKSIYG 63
            SIRI+L +A    + I Q+DV  +FL G L + +YM QP GFI K +   VCKL+K++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIGHLT 123
            LKQA R+W +     + + GF  +V +  ++      +I ++++Y+DDIL+ GND   L 
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLH 1165

Query: 124  DIKEWLATQFQMKD 138
            +  + L+ +F +KD
Sbjct: 1166 NTLDNLSQRFSVKD 1179

[Close]

BLAST of Cmc01g0024361 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-21
Identity = 50/134 (37.31%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 4    SIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKSIYG 63
            SIRI+L +A    + I Q+DV  +FL G L + +YM QP GF+ K +   VC+L+K+IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIGHLT 123
            LKQA R+W +   T + + GF  ++ +  ++      +I ++++Y+DDIL+ GND   L 
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLK 1148

Query: 124  DIKEWLATQFQMKD 138
               + L+ +F +K+
Sbjct: 1149 HTLDALSQRFSVKE 1162

[Close]

BLAST of Cmc01g0024361 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-21
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 2    IKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKSI 61
            I S R +LS+   Y+ ++ QMDVKT+FLNG LKE IYM  P+G         VCKL K+I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAI 1040

Query: 62   YGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVY---ERIIKTTIAFLVLYLDDILLIGND 121
            YGLKQA+R W   F+ A+K   F  +  + C+Y   +  I   I +++LY+DD+++   D
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGD 1100

Query: 122  IGHLTDIKEWLATQFQMKDV 139
            +  + + K +L  +F+M D+
Sbjct: 1101 MTRMNNFKRYLMEKFRMTDL 1117

[Close]

BLAST of Cmc01g0024361 vs. ExPASy Swiss-Prot
Match: Q99337 (Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-NL2 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 46/153 (30.07%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 9    LSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKSIYGLKQAS 68
            LS+A   +Y I Q+D+ +++L  ++KE +Y+  P      G   K+ +L+KS+YGLKQ+ 
Sbjct: 1326 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPP---HLGMNDKLIRLKKSLYGLKQSG 1385

Query: 69   RSWNIRFDTAIKSYGFEQ-NVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIGHLTDIKE 128
             +W   ++T IKSY  EQ +++E   +  + K +   + L++DD++L   D+     I  
Sbjct: 1386 ANW---YET-IKSYLIEQCDMEEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKIIT 1445

Query: 129  WLATQFQMK-------------DVLGIQIVRNR 148
             L  Q+  K             D+LG++I   R
Sbjct: 1446 TLKKQYDTKIINLGESDNEIQYDILGLEIKYQR 1471

[Close]

BLAST of Cmc01g0024361 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.7e-69
Identity = 135/157 (85.99%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIRILLSIATFYDYEIWQMDVKT+FLNGNL+ESIYMVQPEGFIQKGQEQKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVY+RII +T+AFLVLY+DDILLIGN++ 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           HLTDIKEWL TQFQMKD      VLGIQIV+NR  +T
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKT 380

[Close]

BLAST of Cmc01g0024361 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.4e-67
Identity = 127/157 (80.89%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIRILLSIATFYDYEIWQ+DVKT+FLNGNL+ESIYM QPEGFI+KGQEQK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRSWNIRFDTAIKSYGFEQNVD+PCVY++++ + +AFLVLY+DDILL+GND+G
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           +LTDIK+WLATQFQMKD      VLGIQIVRNR  RT
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRT 157

[Close]

BLAST of Cmc01g0024361 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.3e-66
Identity = 130/157 (82.80%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           MIKSIRILLSIATFYDYEIWQMDVKT+FLN NL+ESIYMVQPE FIQKGQEQK+CKLQKS
Sbjct: 318 MIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKLQKS 377

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRS NIRFDTAIKSYG EQNVDEPCVY+RI+ +T+AFLVLY+DDILLIGND+G
Sbjct: 378 IYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGNDVG 437

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           HL DIK+WLA QFQMKD      VLG+QIVRNR  +T
Sbjct: 438 HLADIKKWLAMQFQMKDLGNAQYVLGVQIVRNRKNKT 474

[Close]

BLAST of Cmc01g0024361 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.4e-65
Identity = 125/157 (79.62%), Postives = 143/157 (91.08%), Query Frame = 0


Query: 1    MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
            M+KSIRILLSIATFY+YEIWQMDVKT+FLNGNL+ESIYMVQPEGFI + QEQKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
            IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVY++I+ + +AFL+LY+DDILLIGND+ 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
            +LTD+K+WL TQFQMKD      +LGIQIVRNR  +T
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKT 1050

[Close]

BLAST of Cmc01g0024361 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63
Identity = 124/157 (78.98%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MIKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQEQKVCKLQKS 60
           M+KSIRILLSIATFYDYEIWQMDVKT+FLNGNL+ESI+M QPEGFI +GQEQKVCKL +S
Sbjct: 802 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGNDIG 120
           IYGLKQASRSWNIRFDTAIKSYGF+QNVDEPCVY++I K  +AFLVLY+DDILLIGND+G
Sbjct: 862 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121 HLTDIKEWLATQFQMKD------VLGIQIVRNRIVRT 152
           +LTD+K WLA QFQMKD      VLGIQI+R+R  +T
Sbjct: 922 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKT 958

[Close]

BLAST of Cmc01g0024361 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 105.1 bits (261), Expect = 5.0e-23
Identity = 51/155 (32.90%), Postives = 95/155 (61.29%), Query Frame = 0


Query: 2   IKSIRILLSIATFYDYEIWQMDVKTSFLNGNLKESIYMVQPEGFIQKGQE----QKVCKL 61
           + S++++L+I+  Y++ + Q+D+  +FLNG+L E IYM  P G+  +  +      VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  QKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYERIIKTTIAFLVLYLDDILLIGN 121
           +KSIYGLKQASR W ++F   +  +GF Q+  +   + +I  T    +++Y+DDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DIGHLTDIKEWLATQFQMKDV------LGIQIVRN 147
           +   + ++K  L + F+++D+      LG++I R+
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARS 327

The following BLAST results are available for this feature:

BLAST of Cmc01g0024361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	9.7e-69	85.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK09500.1	9.1e-67	80.89	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	1.7e-65	82.80	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.1e-64	79.62	gag/pol protein, partial [Bryonia dioica]	[more]
TYK15984.1	2.1e-63	78.98	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0024361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.4e-32	46.75	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	9.3e-22	38.81	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.6e-21	37.31	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	3.5e-21	40.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q99337	1.6e-10	30.07	Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc01g0024361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	4.7e-69	85.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5D3CDT9	4.4e-67	80.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
A0A5D3BX45	8.3e-66	82.80	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	5.4e-65	79.62	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	1.0e-63	78.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

BLAST of Cmc01g0024361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.0e-23	32.90	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..139 e-value: 3.8E-40 score: 138.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..143
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 17..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0024361.1	Cmc01g0024361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding