Cmc01g0023611 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0023611
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA/RNA polymerases superfamily protein
Location	CMiso1.1chr01: 23539585 .. 23540037 (-)
RNA-Seq Expression	Cmc01g0023611
Synteny	Cmc01g0023611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

mRNA sequence

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

Coding sequence (CDS)

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

Protein sequence

MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE

Homology

[Close]

BLAST of Cmc01g0023611 vs. NCBI nr
Match: KAA0042193.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 7.9e-76
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 11  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEF 70
           AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEF
Sbjct: 371 AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 430

Query: 71  WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLA 130
           WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGL GYYCRFVEGFSKLA
Sbjct: 431 WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLTGYYCRFVEGFSKLA 490

Query: 131 LPLTNLTRKNVKFEWTDACE 151
           LPLTNLTRKNVKFEWTDACE
Sbjct: 491 LPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of Cmc01g0023611 vs. NCBI nr
Match: TYK26763.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 11  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEF 70
           AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEF
Sbjct: 371 AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 430

Query: 71  WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLA 130
           WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGL GYYCRFVEGFSKLA
Sbjct: 431 WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLA 490

Query: 131 LPLTNLTRKNVKFEWTDACE 151
           LPLTNLTRKNVKFEWTDACE
Sbjct: 491 LPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of Cmc01g0023611 vs. NCBI nr
Match: KAA0047618.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 122/150 (81.33%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           M FGLTNAP AFM+LMN VFHP+LDQFVI+FIDDILVYS SKEKHAEHLRI  QTLR RE
Sbjct: 1   MLFGLTNAPTAFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRE 60

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KWERPT I +IRSFL LA YY 
Sbjct: 61  LYAKFSKCEFWLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYR 120

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Sbjct: 121 RFVEGFSKLALSLTNLTKKNVKFEWTDACE 150

[Close]

BLAST of Cmc01g0023611 vs. NCBI nr
Match: TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RE
Sbjct: 274 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 333

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK ERPT IT+I+SFLGL+ YY 
Sbjct: 334 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 393

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDAC 150
           + VEGFSKLALPLTNLTRKNVKFEWTDAC
Sbjct: 394 QLVEGFSKLALPLTNLTRKNVKFEWTDAC 422

[Close]

BLAST of Cmc01g0023611 vs. NCBI nr
Match: KAA0037114.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RE
Sbjct: 343 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 402

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK ERPT IT+I+SFLGL+ YY 
Sbjct: 403 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 462

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDAC 150
           + VEGFSKLALPLTNLTRKNVKFEWTDAC
Sbjct: 463 QLVEGFSKLALPLTNLTRKNVKFEWTDAC 491

[Close]

BLAST of Cmc01g0023611 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.7e-28
Identity = 58/147 (39.46%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGL NAPA F   MN +  P L++  +V++DDI+V+S S ++H + L +  + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L  +  KCEF      FL HV++ +GI  +P K +A+ K+  PT   +I++FLGL GYY 
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTD 148
           +F+  F+ +A P+T   +KN+K + T+
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTN 480

[Close]

BLAST of Cmc01g0023611 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.8e-26
Identity = 52/138 (37.68%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           +PFGL NAPA F  +++ +   H+ +   V+IDDI+V+S   + H ++LR+ L +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L     K  F    + FL ++V+A+GI  DP+K +A+ +   PT + +++ FLG+  YY 
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEGFSKLALPLTNLTR 139
           +F++ ++K+A PLTNLTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of Cmc01g0023611 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-25
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGL NAPA F   MN +  P L++  +V++DDI+++S S  +H   +++    L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L  +  KCEF      FL H+V+ +GI  +P K KA+  +  PT   +IR+FLGL GYY 
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEGFSKLALPLTNLTRKNVKFE 145
           +F+  ++ +A P+T+  +K  K +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID 476

[Close]

BLAST of Cmc01g0023611 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 47/146 (32.19%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MP+G++ APA F   +N +     +  V+ ++DDIL++S S+ +H +H++  LQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L    +KCEF    + F+ + +S +G          V +W++P    ++R FLG   Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWT 147
           +F+   S+L  PL NL +K+V+++WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of Cmc01g0023611 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 47/146 (32.19%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MP+G++ APA F   +N +     +  V+ ++DDIL++S S+ +H +H++  LQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L    +KCEF    + F+ + +S +G          V +W++P    ++R FLG   Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWT 147
           +F+   S+L  PL NL +K+V+++WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of Cmc01g0023611 vs. ExPASy TrEMBL
Match: A0A5A7TG44 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006940 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.8e-76
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 11  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEF 70
           AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEF
Sbjct: 371 AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 430

Query: 71  WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLA 130
           WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGL GYYCRFVEGFSKLA
Sbjct: 431 WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLTGYYCRFVEGFSKLA 490

Query: 131 LPLTNLTRKNVKFEWTDACE 151
           LPLTNLTRKNVKFEWTDACE
Sbjct: 491 LPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of Cmc01g0023611 vs. ExPASy TrEMBL
Match: A0A5D3DT34 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00550 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.0e-76
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 11  AFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEF 70
           AFMNLM+QVFHPHLDQFVIVFIDDILVYSGSKEKH EHLRIGLQTLRHRELYAKFSKCEF
Sbjct: 371 AFMNLMSQVFHPHLDQFVIVFIDDILVYSGSKEKHVEHLRIGLQTLRHRELYAKFSKCEF 430

Query: 71  WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLA 130
           WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGL GYYCRFVEGFSKLA
Sbjct: 431 WLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLMGYYCRFVEGFSKLA 490

Query: 131 LPLTNLTRKNVKFEWTDACE 151
           LPLTNLTRKNVKFEWTDACE
Sbjct: 491 LPLTNLTRKNVKFEWTDACE 510

[Close]

BLAST of Cmc01g0023611 vs. ExPASy TrEMBL
Match: A0A5A7TXH8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00910 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.4e-64
Identity = 122/150 (81.33%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           M FGLTNAP AFM+LMN VFHP+LDQFVI+FIDDILVYS SKEKHAEHLRI  QTLR RE
Sbjct: 1   MLFGLTNAPTAFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRE 60

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWLD +++L HVVS EGICVDP+K +AV+KWERPT I +IRSFL LA YY 
Sbjct: 61  LYAKFSKCEFWLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYR 120

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFVEGFSKLAL LTNLT+KNVKFEWTDACE
Sbjct: 121 RFVEGFSKLALSLTNLTKKNVKFEWTDACE 150

[Close]

BLAST of Cmc01g0023611 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.3e-63
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RE
Sbjct: 343 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 402

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK ERPT IT+I+SFLGL+ YY 
Sbjct: 403 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 462

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDAC 150
           + VEGFSKLALPLTNLTRKNVKFEWTDAC
Sbjct: 463 QLVEGFSKLALPLTNLTRKNVKFEWTDAC 491

[Close]

BLAST of Cmc01g0023611 vs. ExPASy TrEMBL
Match: A0A5D3CQ91 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001650 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.3e-63
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LMN+VFH +LDQFVIVFIDDILVYS SKEKH EHLRI LQTL  RE
Sbjct: 274 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 333

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWLD +V L H+VS EGICVDP+K +A DK ERPT IT+I+SFLGL+ YY 
Sbjct: 334 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 393

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDAC 150
           + VEGFSKLALPLTNLTRKNVKFEWTDAC
Sbjct: 394 QLVEGFSKLALPLTNLTRKNVKFEWTDAC 422

[Close]

BLAST of Cmc01g0023611 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 48  HLRIGLQTLRHRELYAKFSKCEFWLDWIVFL--VHVVSAEGICVDPRKTKAVDKWERPTF 107
           HL + LQ     + YA   KC F    I +L   H++S EG+  DP K +A+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD 148
            T++R FLGL GYY RFV+ + K+  PLT L +KN   +WT+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTE 103

The following BLAST results are available for this feature:

BLAST of Cmc01g0023611 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042193.1	7.9e-76	97.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK26763.1	1.0e-75	97.86	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0047618.1	6.9e-64	81.33	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK13961.1	1.7e-62	81.21	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037114.1	1.7e-62	81.21	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0023611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	3.7e-28	39.46	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	7.8e-26	37.68	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	3.9e-25	37.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	4.4e-21	32.19	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.4e-21	32.19	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0023611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TG44	3.8e-76	97.86	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DT34	5.0e-76	97.86	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TXH8	3.4e-64	81.33	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T0V4	8.3e-63	81.21	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CQ91	8.3e-63	81.21	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Cmc01g0023611 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.8e-17	41.18	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..72 e-value: 1.9E-13 score: 50.5
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..117 score: 9.019111
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 1.8E-27 score: 97.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..150 e-value: 2.7E-19 score: 71.0
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..148
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..148
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 2.01708E-33 score: 113.844
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0023611.1	Cmc01g0023611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding