Cmc01g0022811 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0022811
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Location	CMiso1.1chr01: 22183937 .. 22184353 (-)
RNA-Seq Expression	Cmc01g0022811
Synteny	Cmc01g0022811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTAAGATCGACCTTCGGTCAGGATATCATCAGTTGAGGATTAAGGATAGTGATGTACCGGAAACAGCCTTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCCTTTGGCTTGACGAATGTGCTAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTTTTATTGTGTTTATTGACGATATTTTGATATATTCCAAGATAGAGGCAGAACATGAGGAGCATTTACGCCTGGTTCTAGAAACCCTTCGAGCTAATAAATTGTATGCAAAGTTCTCAAAATATGAGTTTTGGTTGAAGCAGGTATCCTTTCAAAGCCATGTGGTTTCTAAAGTTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGCCACCAGTTGGCCCTGA

mRNA sequence

ATGTTCTCTAAGATCGACCTTCGGTCAGGATATCATCAGTTGAGGATTAAGGATAGTGATGTACCGGAAACAGCCTTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCCTTTGGCTTGACGAATGTGCTAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTTTTATTGTGTTTATTGACGATATTTTGATATATTCCAAGATAGAGGCAGAACATGAGGAGCATTTACGCCTGGTTCTAGAAACCCTTCGAGCTAATAAATTGTATGCAAAGTTCTCAAAATATGAGTTTTGGTTGAAGCAGGTATCCTTTCAAAGCCATGTGGTTTCTAAAGTTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGCCACCAGTTGGCCCTGA

Coding sequence (CDS)

ATGTTCTCTAAGATCGACCTTCGGTCAGGATATCATCAGTTGAGGATTAAGGATAGTGATGTACCGGAAACAGCCTTTCGTTCCAGATATGGACACTATGAGTTTATTGTGATGTCCTTTGGCTTGACGAATGTGCTAGCAGTGTTTATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTTTTATTGTGTTTATTGACGATATTTTGATATATTCCAAGATAGAGGCAGAACATGAGGAGCATTTACGCCTGGTTCTAGAAACCCTTCGAGCTAATAAATTGTATGCAAAGTTCTCAAAATATGAGTTTTGGTTGAAGCAGGTATCCTTTCAAAGCCATGTGGTTTCTAAAGTTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGCCACCAGTTGGCCCTGA

Protein sequence

MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREFLDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVSKVGVSVDPAKIEAATSWP

Homology

[Close]

BLAST of Cmc01g0022811 vs. NCBI nr
Match: TYK29834.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKDSDVP+TAFRSRYGHYEFIVMSFGLTN  AVFMDLMNRVFREF
Sbjct: 204 VFSKIDLRSGYHQLRIKDSDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREF 263

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVF DDILIYSKIEAEHE+HLR+VL+TLRANKLYAKFSK EFWLKQ+SF  HVVS
Sbjct: 264 LDTFVIVFYDDILIYSKIEAEHEKHLRMVLQTLRANKLYAKFSKCEFWLKQISFLGHVVS 323

Query: 121 KVGVSVDPAKIEAATSWP 139
           K GVSVDPAKIEA TSWP
Sbjct: 324 KAGVSVDPAKIEAVTSWP 341

[Close]

BLAST of Cmc01g0022811 vs. NCBI nr
Match: KAA0059783.1 (pol protein [Cucumis melo var. makuwa] >TYJ99795.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 123/138 (89.13%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN  AVFMDLMN+VFREF
Sbjct: 36  VFSKIDLRSGYHQLRIKDRDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREF 95

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSKIEAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 96  LDTFVIVFIDDILIYSKIEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 155

Query: 121 KVGVSVDPAKIEAATSWP 139
           K GVSVDPAKIEA TSWP
Sbjct: 156 KAGVSVDPAKIEAVTSWP 173

[Close]

BLAST of Cmc01g0022811 vs. NCBI nr
Match: KAA0062719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN LAVFMDLMNRVFREF
Sbjct: 204 VFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFREF 263

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSK EAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 264 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 323

Query: 121 KVGVSVDPAKIEAATSW 138
           K GVSVDPAKIEA TSW
Sbjct: 324 KAGVSVDPAKIEAVTSW 340

[Close]

BLAST of Cmc01g0022811 vs. NCBI nr
Match: TYK20617.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 3.9e-61
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN LAVFMDLMNRVFREF
Sbjct: 238 VFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFREF 297

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSK EAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 298 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 357

Query: 121 KVGVSVDPAKIEAATSW 138
           K GVSVDPAKIEA TSW
Sbjct: 358 KAGVSVDPAKIEAVTSW 374

[Close]

BLAST of Cmc01g0022811 vs. NCBI nr
Match: KAA0039055.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 122/138 (88.41%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN  AVFMDLMNRVFREF
Sbjct: 151 VFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREF 210

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSK+EAEHEEHL +VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 211 LDTFVIVFIDDILIYSKMEAEHEEHLSMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 270

Query: 121 KVGVSVDPAKIEAATSWP 139
           K GVSVDPAKIEA TSWP
Sbjct: 271 KAGVSVDPAKIEAVTSWP 288

[Close]

BLAST of Cmc01g0022811 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.2e-22
Identity = 52/137 (37.96%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 2   FSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREFL 61
           F+ +DL SG+HQ+ +K+SD+P+TAF +  G YEF+ + FGL N  A+F  +++ + RE +
Sbjct: 214 FTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHI 273

Query: 62  DTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVSK 121
                V+IDDI+++S+    H ++LRLVL +L    L     K  F   QV F  ++V+ 
Sbjct: 274 GKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTA 333

Query: 122 VGVSVDPAKIEAATSWP 139
            G+  DP K+ A +  P
Sbjct: 334 DGIKADPKKVRAISEMP 350

[Close]

BLAST of Cmc01g0022811 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-21
Identity = 50/137 (36.50%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 2   FSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREFL 61
           F+ IDL  G+HQ+ + +  + +TAF ++ GHYE++ M FGL N  A F   MN + R  L
Sbjct: 297 FTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLL 356

Query: 62  DTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVSK 121
           +   +V++DDI+I+S    EH   ++LV   L    L  +  K EF  K+ +F  H+V+ 
Sbjct: 357 NKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTP 416

Query: 122 VGVSVDPAKIEAATSWP 139
            G+  +P K++A  S+P
Sbjct: 417 DGIKPNPIKVKAIVSYP 433

[Close]

BLAST of Cmc01g0022811 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-21
Identity = 52/137 (37.96%), Postives = 80/137 (58.39%), Query Frame = 0


Query: 2   FSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREFL 61
           F+ IDL  G+HQ+ +    V +TAF +++GHYE++ M FGL N  A F   MN + R  L
Sbjct: 298 FTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLL 357

Query: 62  DTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVSK 121
           +   +V++DDI+++S    EH + L LV E L    L  +  K EF  ++ +F  HV++ 
Sbjct: 358 NKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTP 417

Query: 122 VGVSVDPAKIEAATSWP 139
            G+  +P KIEA   +P
Sbjct: 418 DGIKPNPEKIEAIQKYP 434

[Close]

BLAST of Cmc01g0022811 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-19
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 2   FSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREFL 61
           F+K+DLRSGY Q+RI   D P+T   +RYG +EF VM FGLTN LA F +LMN V  E+L
Sbjct: 42  FTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYL 101

Query: 62  DTFFIVFIDDIL---IYSKIEAEHEEHLRLVLET 93
           D F +V++DD++   IYS    EH +HLR+V E+
Sbjct: 102 DHFVVVYLDDLVVYTIYSNSLHEHIKHLRVVRES 135

[Close]

BLAST of Cmc01g0022811 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-18
Identity = 46/137 (33.58%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 2   FSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREFL 61
           F+ +DL+SGYHQ+ + + D  +T+F    G YEF  + FGL N  ++F   ++ V RE +
Sbjct: 273 FTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI 332

Query: 62  DTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVSK 121
                V++DD++I+S+ E++H  H+  VL+ L    +     K  F+ + V +   +VSK
Sbjct: 333 GKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSK 392

Query: 122 VGVSVDPAKIEAATSWP 139
            G   DP K++A   +P
Sbjct: 393 DGTKSDPEKVKAIQEYP 409

[Close]

BLAST of Cmc01g0022811 vs. ExPASy TrEMBL
Match: A0A5D3E1T8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00660 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.9e-62
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKDSDVP+TAFRSRYGHYEFIVMSFGLTN  AVFMDLMNRVFREF
Sbjct: 204 VFSKIDLRSGYHQLRIKDSDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREF 263

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVF DDILIYSKIEAEHE+HLR+VL+TLRANKLYAKFSK EFWLKQ+SF  HVVS
Sbjct: 264 LDTFVIVFYDDILIYSKIEAEHEKHLRMVLQTLRANKLYAKFSKCEFWLKQISFLGHVVS 323

Query: 121 KVGVSVDPAKIEAATSWP 139
           K GVSVDPAKIEA TSWP
Sbjct: 324 KAGVSVDPAKIEAVTSWP 341

[Close]

BLAST of Cmc01g0022811 vs. ExPASy TrEMBL
Match: A0A5A7UV33 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00410 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 123/138 (89.13%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN  AVFMDLMN+VFREF
Sbjct: 36  VFSKIDLRSGYHQLRIKDRDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREF 95

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSKIEAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 96  LDTFVIVFIDDILIYSKIEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 155

Query: 121 KVGVSVDPAKIEAATSWP 139
           K GVSVDPAKIEA TSWP
Sbjct: 156 KAGVSVDPAKIEAVTSWP 173

[Close]

BLAST of Cmc01g0022811 vs. ExPASy TrEMBL
Match: A0A5A7VAL8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00460 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-61
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN LAVFMDLMNRVFREF
Sbjct: 204 VFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFREF 263

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSK EAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 264 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 323

Query: 121 KVGVSVDPAKIEAATSW 138
           K GVSVDPAKIEA TSW
Sbjct: 324 KAGVSVDPAKIEAVTSW 340

[Close]

BLAST of Cmc01g0022811 vs. ExPASy TrEMBL
Match: A0A5D3DAL5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold132G00450 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-61
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN LAVFMDLMNRVFREF
Sbjct: 238 VFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNALAVFMDLMNRVFREF 297

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSK EAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 298 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 357

Query: 121 KVGVSVDPAKIEAATSW 138
           K GVSVDPAKIEA TSW
Sbjct: 358 KAGVSVDPAKIEAVTSW 374

[Close]

BLAST of Cmc01g0022811 vs. ExPASy TrEMBL
Match: A0A5D3BYT1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00450 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.4e-61
Identity = 122/138 (88.41%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MFSKIDLRSGYHQLRIKDSDVPETAFRSRYGHYEFIVMSFGLTNVLAVFMDLMNRVFREF 60
           +FSKIDLRSGYHQLRIKD DVP+TAFRSRYGHYEFIVMSFGLTN   VFMDLMNRVFREF
Sbjct: 758 VFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFREF 817

Query: 61  LDTFFIVFIDDILIYSKIEAEHEEHLRLVLETLRANKLYAKFSKYEFWLKQVSFQSHVVS 120
           LDTF IVFIDDILIYSK EAEHEEHLR+VL+TLR NKLYAKFSK EFWLKQVSF  HVVS
Sbjct: 818 LDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVS 877

Query: 121 KVGVSVDPAKIEAATSWP 139
           K GVSVDPAKIEA TSWP
Sbjct: 878 KAGVSVDPAKIEAVTSWP 895

[Close]

BLAST of Cmc01g0022811 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 9.3e-05
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 85  HLRLVLETLRANKLYAKFSKYEFWLKQVSF--QSHVVSKVGVSVDPAKIEAATSWP 139
           HL +VL+    ++ YA   K  F   Q+++    H++S  GVS DPAK+EA   WP
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWP 58

The following BLAST results are available for this feature:

BLAST of Cmc01g0022811 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29834.1	1.0e-61	89.13	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059783.1	3.0e-61	89.13	pol protein [Cucumis melo var. makuwa] >TYJ99795.1 pol protein [Cucumis melo var...	[more]
KAA0062719.1	3.9e-61	89.78	pol protein [Cucumis melo var. makuwa]	[more]
TYK20617.1	3.9e-61	89.78	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039055.1	1.1e-60	88.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0022811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	8.2e-22	37.96	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	3.1e-21	36.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	4.1e-21	37.96	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P31843	5.0e-19	53.19	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P10401	5.5e-18	33.58	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc01g0022811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1T8	4.9e-62	89.13	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UV33	1.4e-61	89.13	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00410 PE...	[more]
A0A5A7VAL8	1.9e-61	89.78	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00460 PE...	[more]
A0A5D3DAL5	1.9e-61	89.78	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BYT1	5.4e-61	88.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold52...	[more]

BLAST of Cmc01g0022811 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.3e-05	39.29	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..115 e-value: 1.6E-15 score: 57.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..119 e-value: 6.4E-40 score: 138.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 12..44 e-value: 6.4E-40 score: 138.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..138
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..138
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..119 e-value: 3.46086E-48 score: 151.209
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0022811.1	Cmc01g0022811.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding