Cmc01g0022791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0022791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 22123738 .. 22125155 (+)
RNA-Seq Expression	Cmc01g0022791
Synteny	Cmc01g0022791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGACAAGGATATTCCAAAAACGACTTTTCGCACTCATGAAGGCCATTACGAGTTCCTTGTTATGCCGTTTGGATTAACCAACGCCCCTGCCACTTTTCAAGCCTTGATGAACAACATCTTTAGACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCCTGATCTACAGCAAGAATGAGAAAGACCACGTAGAGCATATTGAAAAGGTCTTCCTTACATTGAGAAGACATACCCTATTTGCCAATAAAAAAAGTGTAACTTTGGCCAGAAGAAGATCGAATACTTGAGGCACATCATATCAGGGGAAGGAGTAGAAGTAGATTCTGAAAAAATCAAAGCAGTTGCGGATTGTCCATGCCCAACAAACATAAGAGAAGTCCGGGGATTCCTTGGATTAACAGGCTACTATAGGAGGTTCGTCCAACATTATGGATCAATAGCTGCCCCTTTAACTCAACTCCTCAAAAAGGGTGGGTTTAAATGGAATGAAGAATCTGAAAAAGCATTTCTAAAATTGAAGTCTGCAATGATGTCCCTACCAACATTGGCCTTACCCAACTTTGAACTTCCTTTTGAAATAGAAACAGATGCATCCGGTTTTGGAGTGGGAGCCGTGTTAGTTCAATCAAAGAGACTCATTGCCTTCTATAGCCATACACTATCCATGAGCGATAGAGTTCGACCTGTATATGAACGCGAGTTGATGGCTGTTGTACTATCCGTACAAAGATGGAGACCATATCTACTTGGGGCAAAATTCATTGTAAAAACAGATCAGAAATCACTAAATTTCTTGCTGAAACAGAGGGTTATCCAACCACAATATCAAAAGTGGCTATCTAAATTACTGGGATATTCGTTTGAAGTGGTTTATAAACCAGGCTTAGAAAATAAGGCAGCCGATGCCTTATCGAGAAGACCTCCGTATTTGGTGGATTTGCAAGTCATAAAAGAAAAGGTGGAAAAAGATGAGAAGTTAAAGAAAGTAATAGCAAATTTAAACGAAGAAGACGAAGCTCAAACCAGTAAATTTACGTTGAAGAATGGCCACTTGCATTACAAAAATCGACTGGTAATCTCCAAAACTTCGTCCTTAATTCCAGCCATGTTAAACACTTTTCATGACTCAGTAGTAGGAGGACACTCGGGGTTCCTAAGAACATATAAAAGACTAGCAAGTGAACTATATTGGGAAGGGATGAAATCGGATGTCAAAAAACACTGTGAGTCCTGCATAACTTGCCAACGTAACAAAAGCTTAGCTCTATCACCAGCCAGACTGTTAATACCACTTGAAATACCTCATCAAGTTTGGAGCGACATCTCGATGGACTTCATTGATGGTCTACCTAAAGCAAAGGGATGTGATGTAATACTCGTTGTAGTAGATCGGCTCAGCAAATAG

mRNA sequence

ATGGTTGACAAGGATATTCCAAAAACGACTTTTCGCACTCATGAAGGCCATTACGAGTTCCTTGTTATGCCGTTTGGATTAACCAACGCCCCTGCCACTTTTCAAGCCTTGATGAACAACATCTTTAGACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCCTGATCTACAGCAAGAATGAGAAAGACCACGTAGAGCATATTGAAAAGATCGAATACTTGAGGCACATCATATCAGGGGAAGGAGTAGAAGTAGATTCTGAAAAAATCAAAGCAGTTGCGGATTGTCCATGCCCAACAAACATAAGAGAAGTCCGGGGATTCCTTGGATTAACAGGCTACTATAGGAGGTTCGTCCAACATTATGGATCAATAGCTGCCCCTTTAACTCAACTCCTCAAAAAGGGTGGGTTTAAATGGAATGAAGAATCTGAAAAAGCATTTCTAAAATTGAAGTCTGCAATGATGTCCCTACCAACATTGGCCTTACCCAACTTTGAACTTCCTTTTGAAATAGAAACAGATGCATCCGGTTTTGGAGTGGGAGCCGTGTTAGTTCAATCAAAGAGACTCATTGCCTTCTATAGCCATACACTATCCATGAGCGATAGAGTTCGACCTGTATATGAACGCGAGTTGATGGCTGTTGTACTATCCGTACAAAGATGGAGACCATATCTACTTGGGGCAAAATTCATTGTAAAAACAGATCAGAAATCACTAAATTTCTTGCTGAAACAGAGGGTTATCCAACCACAATATCAAAAGTGGCTATCTAAATTACTGGGATATTCGTTTGAAGTGGTTTATAAACCAGGCTTAGAAAATAAGGCAGCCGATGCCTTATCGAGAAGACCTCCGTATTTGGTGGATTTGCAAGTCATAAAAGAAAAGGTGGAAAAAGATGAGAAGTTAAAGAAAGTAATAGCAAATTTAAACGAAGAAGACGAAGCTCAAACCAGTAAATTTACGTTGAAGAATGGCCACTTGCATTACAAAAATCGACTGGTAATCTCCAAAACTTCGTCCTTAATTCCAGCCATGTTAAACACTTTTCATGACTCAGTAGTAGGAGGACACTCGGGGTTCCTAAGAACATATAAAAGACTAGCAAGTGAACTATATTGGGAAGGGATGAAATCGGATGTCAAAAAACACTGTGAGTCCTGCATAACTTGCCAACGTAACAAAAGCTTAGCTCTATCACCAGCCAGACTGTTAATACCACTTGAAATACCTCATCAAGTTTGGAGCGACATCTCGATGGACTTCATTGATGGTCTACCTAAAGCAAAGGGATGTGATGTAATACTCGTTGTAGTAGATCGGCTCAGCAAATAG

Coding sequence (CDS)

ATGGTTGACAAGGATATTCCAAAAACGACTTTTCGCACTCATGAAGGCCATTACGAGTTCCTTGTTATGCCGTTTGGATTAACCAACGCCCCTGCCACTTTTCAAGCCTTGATGAACAACATCTTTAGACCATTTTTGAGAAAATTTGTTTTGGTCTTCTTCGATGATATCCTGATCTACAGCAAGAATGAGAAAGACCACGTAGAGCATATTGAAAAGATCGAATACTTGAGGCACATCATATCAGGGGAAGGAGTAGAAGTAGATTCTGAAAAAATCAAAGCAGTTGCGGATTGTCCATGCCCAACAAACATAAGAGAAGTCCGGGGATTCCTTGGATTAACAGGCTACTATAGGAGGTTCGTCCAACATTATGGATCAATAGCTGCCCCTTTAACTCAACTCCTCAAAAAGGGTGGGTTTAAATGGAATGAAGAATCTGAAAAAGCATTTCTAAAATTGAAGTCTGCAATGATGTCCCTACCAACATTGGCCTTACCCAACTTTGAACTTCCTTTTGAAATAGAAACAGATGCATCCGGTTTTGGAGTGGGAGCCGTGTTAGTTCAATCAAAGAGACTCATTGCCTTCTATAGCCATACACTATCCATGAGCGATAGAGTTCGACCTGTATATGAACGCGAGTTGATGGCTGTTGTACTATCCGTACAAAGATGGAGACCATATCTACTTGGGGCAAAATTCATTGTAAAAACAGATCAGAAATCACTAAATTTCTTGCTGAAACAGAGGGTTATCCAACCACAATATCAAAAGTGGCTATCTAAATTACTGGGATATTCGTTTGAAGTGGTTTATAAACCAGGCTTAGAAAATAAGGCAGCCGATGCCTTATCGAGAAGACCTCCGTATTTGGTGGATTTGCAAGTCATAAAAGAAAAGGTGGAAAAAGATGAGAAGTTAAAGAAAGTAATAGCAAATTTAAACGAAGAAGACGAAGCTCAAACCAGTAAATTTACGTTGAAGAATGGCCACTTGCATTACAAAAATCGACTGGTAATCTCCAAAACTTCGTCCTTAATTCCAGCCATGTTAAACACTTTTCATGACTCAGTAGTAGGAGGACACTCGGGGTTCCTAAGAACATATAAAAGACTAGCAAGTGAACTATATTGGGAAGGGATGAAATCGGATGTCAAAAAACACTGTGAGTCCTGCATAACTTGCCAACGTAACAAAAGCTTAGCTCTATCACCAGCCAGACTGTTAATACCACTTGAAATACCTCATCAAGTTTGGAGCGACATCTCGATGGACTTCATTGATGGTCTACCTAAAGCAAAGGGATGTGATGTAATACTCGTTGTAGTAGATCGGCTCAGCAAATAG

Protein sequence

MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIYSKNEKDHVEHIEKIEYLRHIISGEGVEVDSEKIKAVADCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELMAVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRPPYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFTLKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRLSK

Homology

[Close]

BLAST of Cmc01g0022791 vs. NCBI nr
Match: KAA0064689.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK19901.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 810.1 bits (2091), Expect = 9.8e-231
Identity = 406/460 (88.26%), Postives = 427/460 (92.83%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M+DKDIPKT FRTHEGHYEFLVMPFGLTNA ATFQALMNNIFRPFLRKFVLVFFDDILIY
Sbjct: 29  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNALATFQALMNNIFRPFLRKFVLVFFDDILIY 88

Query: 61  SKNEKDHVEHIE-KIEYLRHIISGEGVEVDSEKIKAVADCPCPTNIREVRGFLGLTGYYR 120
           SKNEKDH+EHIE K+EYL HIISGEGVEVDSEKIKAV D PCPTNIREVRGFLGLTGYYR
Sbjct: 89  SKNEKDHIEHIEKKVEYLGHIISGEGVEVDSEKIKAVVDWPCPTNIREVRGFLGLTGYYR 148

Query: 121 RFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNFELPFEIETDA 180
           RFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPNF LPFEIETDA
Sbjct: 149 RFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSAMMSLPTLALPNFTLPFEIETDA 208

Query: 181 SGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELMAVVLSVQRWRPYLLGAKFIVKT 240
           SGFGVGAVL+QSKR IAFYSHTLSM DR RPVYERELMAVVLSVQRWRPYLLGAKF+VKT
Sbjct: 209 SGFGVGAVLIQSKRPIAFYSHTLSMRDRARPVYERELMAVVLSVQRWRPYLLGAKFVVKT 268

Query: 241 DQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRP---------- 300
           DQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRP          
Sbjct: 269 DQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRPPDIHLNSISV 328

Query: 301 PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFTLKNGHLHYKNRLVISKTSSLIP 360
           PY +DL+ IK++VEKDEKLKK++A+L +EDE QTSKFTLKN  LHYKNRLVISK SSLIP
Sbjct: 329 PYWMDLETIKKEVEKDEKLKKIVASLRKEDENQTSKFTLKNSLLHYKNRLVISKDSSLIP 388

Query: 361 AMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARL 420
           A+LNTFHDSVVGGHSGFLRT KRLASELYWEGMKSDVKKHCESCITCQRNKSLALSP  L
Sbjct: 389 AILNTFHDSVVGGHSGFLRTCKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPTGL 448

Query: 421 LIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRLSK 450
           L+PLEIPHQ+WSDISMDFIDGLPKAKG DVILVVVDRLSK
Sbjct: 449 LMPLEIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRLSK 488

[Close]

BLAST of Cmc01g0022791 vs. NCBI nr
Match: TYK23779.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 807.0 bits (2083), Expect = 8.3e-230
Identity = 404/482 (83.82%), Postives = 429/482 (89.00%), Query Frame = 0


Query: 1    MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
            M+DKDIPKT FRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 648  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIY 707

Query: 61   SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
            SKNEKDH+EHIE                       K+EYL HIISGEGVEVDSEKIK VA
Sbjct: 708  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKVVA 767

Query: 121  DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
            D PCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSA
Sbjct: 768  DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 827

Query: 181  MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
            MMSLPTLALPNF LPFEIETDASGFGVGAVL+QSKR IAFYSHTLSM DR RPVYERELM
Sbjct: 828  MMSLPTLALPNFTLPFEIETDASGFGVGAVLIQSKRPIAFYSHTLSMRDRARPVYERELM 887

Query: 241  AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
            AVVLSVQRWRPYLLGAKF+VKTDQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGL
Sbjct: 888  AVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGL 947

Query: 301  ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
            ENKAADALSRRP          PY +DL+ IKE+VEKDEKLKK++A+LNEEDE QTSKFT
Sbjct: 948  ENKAADALSRRPPDIQLNSISIPYWMDLETIKEEVEKDEKLKKIVASLNEEDEDQTSKFT 1007

Query: 361  LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
            +KN  LHYKNRLVISK SSLIPA++NTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 1008 IKNSLLHYKNRLVISKASSLIPAIMNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 1067

Query: 421  KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
            KHCE+C+TCQRNKSLALSP  LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 1068 KHCEACVTCQRNKSLALSPVGLLMPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 1127

[Close]

BLAST of Cmc01g0022791 vs. NCBI nr
Match: TYK02195.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 805.4 bits (2079), Expect = 2.4e-229
Identity = 407/482 (84.44%), Postives = 431/482 (89.42%), Query Frame = 0


Query: 1    MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
            M+DKDIPKT FRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 738  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 797

Query: 61   SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
            SKNEKDH+EHIE                       K+EYL HIISGEGVEVDSEKIKAVA
Sbjct: 798  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 857

Query: 121  DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
            D PCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSA
Sbjct: 858  DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 917

Query: 181  MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
            MMSLPTLALPNF LPFEIETDASGFGVGAVL+QSKR IAFYSHTLSM DR RPVYERELM
Sbjct: 918  MMSLPTLALPNFTLPFEIETDASGFGVGAVLIQSKRPIAFYSHTLSMRDRARPVYERELM 977

Query: 241  AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
            AVVLSVQRWRPYLLGAKF+VKTDQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGL
Sbjct: 978  AVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGL 1037

Query: 301  ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
            ENKAADALSRRP          PY +DL+ IKE+VEKDEKLKK++A+LNEEDE QTSKFT
Sbjct: 1038 ENKAADALSRRPPDIQLNSISIPYWMDLETIKEEVEKDEKLKKIVASLNEEDEDQTSKFT 1097

Query: 361  LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
            +KN  LHYKNRLVISK SSLIPA+LNTFHDSVV GHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 1098 IKNSLLHYKNRLVISKASSLIPAILNTFHDSVV-GHSGFLRTYKRLASELYWEGMKSDVK 1157

Query: 421  KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
            KHCE+C+TCQRNKSLALSPA LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 1158 KHCEACVTCQRNKSLALSPAGLLMPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 1217

[Close]

BLAST of Cmc01g0022791 vs. NCBI nr
Match: KAA0060678.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 795.0 bits (2052), Expect = 3.3e-226
Identity = 402/482 (83.40%), Postives = 425/482 (88.17%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M DKDI KT FRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 78  MTDKDILKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 137

Query: 61  SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
           SKNEKDH EHIE                       K+EYL HIISGEGVEVDSEKIKAVA
Sbjct: 138 SKNEKDHTEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 197

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
           DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWN+++E++F KLKSA
Sbjct: 198 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNKDAEESFRKLKSA 257

Query: 181 MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
           MMSLPTLALPNF LPFEIETDASGFGVGAVL+Q+KR IAFYSHTLSM DR RPVYERELM
Sbjct: 258 MMSLPTLALPNFTLPFEIETDASGFGVGAVLIQAKRPIAFYSHTLSMRDRARPVYERELM 317

Query: 241 AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
           AVVLSVQRWRPYLLGAKF+VKTDQKSL FLL+QRVIQPQYQK LSKLLGYSFEVVYKPGL
Sbjct: 318 AVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRVIQPQYQKCLSKLLGYSFEVVYKPGL 377

Query: 301 ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
           ENKAADALSRRP          PY +DL+ IKE+VEKDEKLKK+  +LNEEDE QTSKFT
Sbjct: 378 ENKAADALSRRPPDIQLNNISIPYWMDLETIKEEVEKDEKLKKIATSLNEEDEGQTSKFT 437

Query: 361 LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
           +KN  LHYKNRLVI K SSLIPA+LNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 438 IKNSLLHYKNRLVILKASSLIPAILNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 497

Query: 421 KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
           KH E+C+TCQRNKSLALSPA LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 498 KHSEACVTCQRNKSLALSPAGLLVPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 557

[Close]

BLAST of Cmc01g0022791 vs. NCBI nr
Match: KAA0047643.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 793.1 bits (2047), Expect = 1.2e-225
Identity = 399/482 (82.78%), Postives = 426/482 (88.38%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M+DKDIPKT FRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 60

Query: 61  SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
           SKNEKDH+EHIE                       K+EYL HIISGEGVE+DSEKIKAVA
Sbjct: 61  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEIDSEKIKAVA 120

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
           D PCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKK GFKWNE++E++F KLKSA
Sbjct: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKEGFKWNEDAEESFRKLKSA 180

Query: 181 MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
           MMSLPTLALPNF LPFEIETD SGFGVGAVL+Q+KR IAFYSHTLSM DR RPVYERELM
Sbjct: 181 MMSLPTLALPNFTLPFEIETDVSGFGVGAVLIQAKRPIAFYSHTLSMRDRARPVYERELM 240

Query: 241 AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
           AVVLSVQRWRPYLLGAKF+VK DQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGL
Sbjct: 241 AVVLSVQRWRPYLLGAKFVVKPDQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300

Query: 301 ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
           ENKA DALSRRP          PY +DL+ IKE+VE DEKLKK+ A+LN+EDE QT+KFT
Sbjct: 301 ENKAVDALSRRPPDIQLNSISIPYWMDLETIKEEVE-DEKLKKIAASLNKEDEGQTNKFT 360

Query: 361 LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
           +KN  LHYKNRLVISK SSLIPA+LNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 361 IKNSLLHYKNRLVISKASSLIPAILNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420

Query: 421 KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
           KHCE+C+TCQRNKSLALSPA LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 421 KHCEACVTCQRNKSLALSPAGLLVPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 480

[Close]

BLAST of Cmc01g0022791 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.4e-59
Identity = 127/312 (40.71%), Postives = 185/312 (59.29%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M ++ I KT F T  GHYE+L MPFGL NAPATFQ  MNNI RP L K  LV+ DDI+I+
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  SKNEKDHVEHI----------------EKIEYLR-------HIISGEGVEVDSEKIKAVA 120
           S +  +H+  I                +K E+L+       HI++ +G++ +  K+KA+ 
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESE--KAFLKLK 180
             P PT  +E+R FLGLTGYYR+F+ +Y  IA P+T  LKK      ++ E  +AF KLK
Sbjct: 431 SYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLK 490

Query: 181 SAMMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERE 240
           + ++  P L LP+FE  F + TDAS   +GAVL Q+   I+F S TL+  +      E+E
Sbjct: 491 ALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKE 550

Query: 241 LMAVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKP 288
           L+A+V + + +R YLLG +F++ +D + L +L   +    + ++W  +L  Y F++ Y  
Sbjct: 551 LLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIK 610

[Close]

BLAST of Cmc01g0022791 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 229.2 bits (583), Expect = 9.4e-59
Identity = 162/512 (31.64%), Postives = 254/512 (49.61%), Query Frame = 0


Query: 1    MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
            M  KD  KT F T  G YE+ VMPFGL NAP+TF   M + FR    +FV V+ DDILI+
Sbjct: 722  MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 781

Query: 61   SKNEKDHVEHI-----------------------EKIEYLRHIISGEGVEVDSEKIKAVA 120
            S++ ++H +H+                       E+ E+L + I  + +     K  A+ 
Sbjct: 782  SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 841

Query: 121  DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
            D P P  +++ + FLG+  YYRRF+ +   IA P+ QL      +W E+ +KA  KLK+A
Sbjct: 842  DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIEKLKAA 901

Query: 181  MMSLPTLALPNFELPFEIETDASGFGVGAVL--VQSKR----LIAFYSHTLSMSDRVRPV 240
            + + P L   N +  + + TDAS  G+GAVL  V +K     ++ ++S +L  + +  P 
Sbjct: 902  LCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPA 961

Query: 241  YERELMAVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEV 300
             E EL+ ++ ++  +R  L G  F ++TD  SL  L  +     + Q+WL  L  Y F +
Sbjct: 962  GELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTL 1021

Query: 301  VYKPGLENKAADALSR----------RPPYLVDLQVIKEKVEKDEKLKKVIANLNE---- 360
             Y  G +N  ADA+SR          RP   +D +  K   + D     V+ ++ E    
Sbjct: 1022 EYLAGPKNVVADAISRAIYTITPETSRP---IDTESWKSYYKSDPLCSAVLIHMKELTQH 1081

Query: 361  ----ED--------------EAQTSKFTLKNGHLHYKNRLVISKTSSLIPAMLNTFHD-S 420
                ED              E     ++L++  ++Y++RLV+        A++  +HD +
Sbjct: 1082 NVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQ--NAVMRLYHDHT 1141

Query: 421  VVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARLLIPLEIPHQ 450
            + GGH G   T  +++   YW  ++  + ++  +C+ CQ  KS       LL PL I   
Sbjct: 1142 LFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEG 1201

[Close]

BLAST of Cmc01g0022791 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 228.4 bits (581), Expect = 1.6e-58
Identity = 162/512 (31.64%), Postives = 253/512 (49.41%), Query Frame = 0


Query: 1    MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
            M  KD  KT F T  G YE+ VMPFGL NAP+TF   M + FR    +FV V+ DDILI+
Sbjct: 696  MEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIF 755

Query: 61   SKNEKDHVEHI-----------------------EKIEYLRHIISGEGVEVDSEKIKAVA 120
            S++ ++H +H+                       E+ E+L + I  + +     K  A+ 
Sbjct: 756  SESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIR 815

Query: 121  DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
            D P P  +++ + FLG+  YYRRF+ +   IA P+ QL      +W E+ +KA  KLK A
Sbjct: 816  DFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIDKLKDA 875

Query: 181  MMSLPTLALPNFELPFEIETDASGFGVGAVL--VQSKR----LIAFYSHTLSMSDRVRPV 240
            + + P L   N +  + + TDAS  G+GAVL  V +K     ++ ++S +L  + +  P 
Sbjct: 876  LCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPA 935

Query: 241  YERELMAVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEV 300
             E EL+ ++ ++  +R  L G  F ++TD  SL  L  +     + Q+WL  L  Y F +
Sbjct: 936  GELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTL 995

Query: 301  VYKPGLENKAADALSR----------RPPYLVDLQVIKEKVEKDEKLKKVIANLNE---- 360
             Y  G +N  ADA+SR          RP   +D +  K   + D     V+ ++ E    
Sbjct: 996  EYLAGPKNVVADAISRAVYTITPETSRP---IDTESWKSYYKSDPLCSAVLIHMKELTQH 1055

Query: 361  ----ED--------------EAQTSKFTLKNGHLHYKNRLVISKTSSLIPAMLNTFHD-S 420
                ED              E     ++L++  ++Y++RLV+        A++  +HD +
Sbjct: 1056 NVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQ--NAVMRLYHDHT 1115

Query: 421  VVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARLLIPLEIPHQ 450
            + GGH G   T  +++   YW  ++  + ++  +C+ CQ  KS       LL PL I   
Sbjct: 1116 LFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEG 1175

[Close]

BLAST of Cmc01g0022791 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-55
Identity = 118/312 (37.82%), Postives = 181/312 (58.01%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M  + + KT F T  GHYE+L MPFGL NAPATFQ  MN+I RP L K  LV+ DDI+++
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  SKNEKDHVE----------------HIEKIEYLR-------HIISGEGVEVDSEKIKAVA 120
           S +  +H++                 ++K E+L+       H+++ +G++ + EKI+A+ 
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGG--FKWNEESEKAFLKLK 180
             P PT  +E++ FLGLTGYYR+F+ ++  IA P+T+ LKK       N E + AF KLK
Sbjct: 432 KYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

Query: 181 SAMMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERE 240
             +   P L +P+F   F + TDAS   +GAVL Q    +++ S TL+  +      E+E
Sbjct: 492 YLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKE 551

Query: 241 LMAVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKP 288
           L+A+V + + +R YLLG  F + +D + L++L + +    +  +W  KL  + F++ Y  
Sbjct: 552 LLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIK 611

[Close]

BLAST of Cmc01g0022791 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-54
Identity = 128/386 (33.16%), Postives = 209/386 (54.15%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M + DIPKT F T  G YEFL +PFGL NAPA FQ ++++I R  + K   V+ DDI+++
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
           S++   H +++                        ++E+L +I++ +G++ D +K++A++
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLK------------KGGFKWNE 180
           + P PT+++E++ FLG+T YYR+F+Q Y  +A PLT L +            K     +E
Sbjct: 348 EMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDE 407

Query: 181 ESEKAFLKLKSAMMSLPTLALPNFELPFEIETDASGFGVGAVLVQS----KRLIAFYSHT 240
            + ++F  LKS + S   LA P F  PF + TDAS + +GAVL Q      R IA+ S +
Sbjct: 408 TALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRS 467

Query: 241 LSMSDRVRPVYERELMAVVLSVQRWRPYLLGAKFI-VKTDQKSLNFLLKQRVIQPQYQKW 300
           L+ ++      E+E++A++ S+   R YL GA  I V TD + L F L  R    + ++W
Sbjct: 468 LNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRW 527

Query: 301 LSKLLGYSFEVVYKPGLENKAADALSRRPPYLVDLQVIKEKVEKDEKLKKVIANLNEEDE 347
            +++  Y+ E++YKPG  N  ADALSR PP L  L    +   +D+      A+    D 
Sbjct: 528 KARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLSTDLDANPEDDMQSLATAHSALHDS 587

[Close]

BLAST of Cmc01g0022791 vs. ExPASy TrEMBL
Match: A0A5A7VGU4 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00100 PE=4 SV=1)

HSP 1 Score: 810.1 bits (2091), Expect = 4.7e-231
Identity = 406/460 (88.26%), Postives = 427/460 (92.83%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M+DKDIPKT FRTHEGHYEFLVMPFGLTNA ATFQALMNNIFRPFLRKFVLVFFDDILIY
Sbjct: 29  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNALATFQALMNNIFRPFLRKFVLVFFDDILIY 88

Query: 61  SKNEKDHVEHIE-KIEYLRHIISGEGVEVDSEKIKAVADCPCPTNIREVRGFLGLTGYYR 120
           SKNEKDH+EHIE K+EYL HIISGEGVEVDSEKIKAV D PCPTNIREVRGFLGLTGYYR
Sbjct: 89  SKNEKDHIEHIEKKVEYLGHIISGEGVEVDSEKIKAVVDWPCPTNIREVRGFLGLTGYYR 148

Query: 121 RFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNFELPFEIETDA 180
           RFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSAMMSLPTLALPNF LPFEIETDA
Sbjct: 149 RFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSAMMSLPTLALPNFTLPFEIETDA 208

Query: 181 SGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELMAVVLSVQRWRPYLLGAKFIVKT 240
           SGFGVGAVL+QSKR IAFYSHTLSM DR RPVYERELMAVVLSVQRWRPYLLGAKF+VKT
Sbjct: 209 SGFGVGAVLIQSKRPIAFYSHTLSMRDRARPVYERELMAVVLSVQRWRPYLLGAKFVVKT 268

Query: 241 DQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRP---------- 300
           DQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRP          
Sbjct: 269 DQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGLENKAADALSRRPPDIHLNSISV 328

Query: 301 PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFTLKNGHLHYKNRLVISKTSSLIP 360
           PY +DL+ IK++VEKDEKLKK++A+L +EDE QTSKFTLKN  LHYKNRLVISK SSLIP
Sbjct: 329 PYWMDLETIKKEVEKDEKLKKIVASLRKEDENQTSKFTLKNSLLHYKNRLVISKDSSLIP 388

Query: 361 AMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPARL 420
           A+LNTFHDSVVGGHSGFLRT KRLASELYWEGMKSDVKKHCESCITCQRNKSLALSP  L
Sbjct: 389 AILNTFHDSVVGGHSGFLRTCKRLASELYWEGMKSDVKKHCESCITCQRNKSLALSPTGL 448

Query: 421 LIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRLSK 450
           L+PLEIPHQ+WSDISMDFIDGLPKAKG DVILVVVDRLSK
Sbjct: 449 LMPLEIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRLSK 488

[Close]

BLAST of Cmc01g0022791 vs. ExPASy TrEMBL
Match: A0A5D3DKH5 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001060 PE=4 SV=1)

HSP 1 Score: 807.0 bits (2083), Expect = 4.0e-230
Identity = 404/482 (83.82%), Postives = 429/482 (89.00%), Query Frame = 0


Query: 1    MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
            M+DKDIPKT FRTHEGHYEFLVMPFGLTNAP TFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 648  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPTTFQALMNSIFRPFLRKFVLVFFDDILIY 707

Query: 61   SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
            SKNEKDH+EHIE                       K+EYL HIISGEGVEVDSEKIK VA
Sbjct: 708  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKVVA 767

Query: 121  DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
            D PCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSA
Sbjct: 768  DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 827

Query: 181  MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
            MMSLPTLALPNF LPFEIETDASGFGVGAVL+QSKR IAFYSHTLSM DR RPVYERELM
Sbjct: 828  MMSLPTLALPNFTLPFEIETDASGFGVGAVLIQSKRPIAFYSHTLSMRDRARPVYERELM 887

Query: 241  AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
            AVVLSVQRWRPYLLGAKF+VKTDQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGL
Sbjct: 888  AVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGL 947

Query: 301  ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
            ENKAADALSRRP          PY +DL+ IKE+VEKDEKLKK++A+LNEEDE QTSKFT
Sbjct: 948  ENKAADALSRRPPDIQLNSISIPYWMDLETIKEEVEKDEKLKKIVASLNEEDEDQTSKFT 1007

Query: 361  LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
            +KN  LHYKNRLVISK SSLIPA++NTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 1008 IKNSLLHYKNRLVISKASSLIPAIMNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 1067

Query: 421  KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
            KHCE+C+TCQRNKSLALSP  LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 1068 KHCEACVTCQRNKSLALSPVGLLMPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 1127

[Close]

BLAST of Cmc01g0022791 vs. ExPASy TrEMBL
Match: A0A5D3BSP2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00980 PE=4 SV=1)

HSP 1 Score: 805.4 bits (2079), Expect = 1.2e-229
Identity = 407/482 (84.44%), Postives = 431/482 (89.42%), Query Frame = 0


Query: 1    MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
            M+DKDIPKT FRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 738  MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 797

Query: 61   SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
            SKNEKDH+EHIE                       K+EYL HIISGEGVEVDSEKIKAVA
Sbjct: 798  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 857

Query: 121  DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
            D PCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNE++E++F KLKSA
Sbjct: 858  DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEDAEESFRKLKSA 917

Query: 181  MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
            MMSLPTLALPNF LPFEIETDASGFGVGAVL+QSKR IAFYSHTLSM DR RPVYERELM
Sbjct: 918  MMSLPTLALPNFTLPFEIETDASGFGVGAVLIQSKRPIAFYSHTLSMRDRARPVYERELM 977

Query: 241  AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
            AVVLSVQRWRPYLLGAKF+VKTDQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGL
Sbjct: 978  AVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGL 1037

Query: 301  ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
            ENKAADALSRRP          PY +DL+ IKE+VEKDEKLKK++A+LNEEDE QTSKFT
Sbjct: 1038 ENKAADALSRRPPDIQLNSISIPYWMDLETIKEEVEKDEKLKKIVASLNEEDEDQTSKFT 1097

Query: 361  LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
            +KN  LHYKNRLVISK SSLIPA+LNTFHDSVV GHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 1098 IKNSLLHYKNRLVISKASSLIPAILNTFHDSVV-GHSGFLRTYKRLASELYWEGMKSDVK 1157

Query: 421  KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
            KHCE+C+TCQRNKSLALSPA LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 1158 KHCEACVTCQRNKSLALSPAGLLMPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 1217

[Close]

BLAST of Cmc01g0022791 vs. ExPASy TrEMBL
Match: A0A5A7UZJ7 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005750 PE=4 SV=1)

HSP 1 Score: 795.0 bits (2052), Expect = 1.6e-226
Identity = 402/482 (83.40%), Postives = 425/482 (88.17%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M DKDI KT FRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 78  MTDKDILKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 137

Query: 61  SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
           SKNEKDH EHIE                       K+EYL HIISGEGVEVDSEKIKAVA
Sbjct: 138 SKNEKDHTEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEVDSEKIKAVA 197

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
           DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWN+++E++F KLKSA
Sbjct: 198 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNKDAEESFRKLKSA 257

Query: 181 MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
           MMSLPTLALPNF LPFEIETDASGFGVGAVL+Q+KR IAFYSHTLSM DR RPVYERELM
Sbjct: 258 MMSLPTLALPNFTLPFEIETDASGFGVGAVLIQAKRPIAFYSHTLSMRDRARPVYERELM 317

Query: 241 AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
           AVVLSVQRWRPYLLGAKF+VKTDQKSL FLL+QRVIQPQYQK LSKLLGYSFEVVYKPGL
Sbjct: 318 AVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRVIQPQYQKCLSKLLGYSFEVVYKPGL 377

Query: 301 ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
           ENKAADALSRRP          PY +DL+ IKE+VEKDEKLKK+  +LNEEDE QTSKFT
Sbjct: 378 ENKAADALSRRPPDIQLNNISIPYWMDLETIKEEVEKDEKLKKIATSLNEEDEGQTSKFT 437

Query: 361 LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
           +KN  LHYKNRLVI K SSLIPA+LNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 438 IKNSLLHYKNRLVILKASSLIPAILNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 497

Query: 421 KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
           KH E+C+TCQRNKSLALSPA LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 498 KHSEACVTCQRNKSLALSPAGLLVPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 557

[Close]

BLAST of Cmc01g0022791 vs. ExPASy TrEMBL
Match: A0A5A7TVR3 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001270 PE=4 SV=1)

HSP 1 Score: 793.1 bits (2047), Expect = 6.0e-226
Identity = 399/482 (82.78%), Postives = 426/482 (88.38%), Query Frame = 0


Query: 1   MVDKDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNNIFRPFLRKFVLVFFDDILIY 60
           M+DKDIPKT FRTHEGHYEFLVMPFGLTNAPATFQALMN+IFRPFLRKFVLVFFDDILIY
Sbjct: 1   MIDKDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPFLRKFVLVFFDDILIY 60

Query: 61  SKNEKDHVEHIE-----------------------KIEYLRHIISGEGVEVDSEKIKAVA 120
           SKNEKDH+EHIE                       K+EYL HIISGEGVE+DSEKIKAVA
Sbjct: 61  SKNEKDHIEHIEKVFLALRKHSLFANKKKCNFGQKKVEYLGHIISGEGVEIDSEKIKAVA 120

Query: 121 DCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFKWNEESEKAFLKLKSA 180
           D PCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKK GFKWNE++E++F KLKSA
Sbjct: 121 DWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKEGFKWNEDAEESFRKLKSA 180

Query: 181 MMSLPTLALPNFELPFEIETDASGFGVGAVLVQSKRLIAFYSHTLSMSDRVRPVYERELM 240
           MMSLPTLALPNF LPFEIETD SGFGVGAVL+Q+KR IAFYSHTLSM DR RPVYERELM
Sbjct: 181 MMSLPTLALPNFTLPFEIETDVSGFGVGAVLIQAKRPIAFYSHTLSMRDRARPVYERELM 240

Query: 241 AVVLSVQRWRPYLLGAKFIVKTDQKSLNFLLKQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300
           AVVLSVQRWRPYLLGAKF+VK DQKSL FLL+QRVIQPQYQKWLSKLLGYSFEVVYKPGL
Sbjct: 241 AVVLSVQRWRPYLLGAKFVVKPDQKSLKFLLEQRVIQPQYQKWLSKLLGYSFEVVYKPGL 300

Query: 301 ENKAADALSRRP----------PYLVDLQVIKEKVEKDEKLKKVIANLNEEDEAQTSKFT 360
           ENKA DALSRRP          PY +DL+ IKE+VE DEKLKK+ A+LN+EDE QT+KFT
Sbjct: 301 ENKAVDALSRRPPDIQLNSISIPYWMDLETIKEEVE-DEKLKKIAASLNKEDEGQTNKFT 360

Query: 361 LKNGHLHYKNRLVISKTSSLIPAMLNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420
           +KN  LHYKNRLVISK SSLIPA+LNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK
Sbjct: 361 IKNSLLHYKNRLVISKASSLIPAILNTFHDSVVGGHSGFLRTYKRLASELYWEGMKSDVK 420

Query: 421 KHCESCITCQRNKSLALSPARLLIPLEIPHQVWSDISMDFIDGLPKAKGCDVILVVVDRL 450
           KHCE+C+TCQRNKSLALSPA LL+PL+IPHQ+WSDISMDFIDGLPKAKG DVILVVVDRL
Sbjct: 421 KHCEACVTCQRNKSLALSPAGLLVPLDIPHQIWSDISMDFIDGLPKAKGWDVILVVVDRL 480

[Close]

BLAST of Cmc01g0022791 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-27
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 73  KIEYL--RHIISGEGVEVDSEKIKAVADCPCPTNIREVRGFLGLTGYYRRFVQHYGSIAA 132
           +I YL  RHIISGEGV  D  K++A+   P P N  E+RGFLGLTGYYRRFV++YG I  
Sbjct: 29  QIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVR 88

Query: 133 PLTQLLKKGGFKWNEESEKAFLKLKSAMMSLPTLALPNFELPF 174
           PLT+LLKK   KW E +  AF  LK A+ +LP LALP+ +LPF
Sbjct: 89  PLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc01g0022791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064689.1	9.8e-231	88.26	putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK19901.1 put...	[more]
TYK23779.1	8.3e-230	83.82	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02195.1	2.4e-229	84.44	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060678.1	3.3e-226	83.40	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047643.1	1.2e-225	82.78	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0022791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	9.4e-59	40.71	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q7LHG5	9.4e-59	31.64	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	1.6e-58	31.64	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	1.7e-55	37.82	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.1e-54	33.16	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc01g0022791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGU4	4.7e-231	88.26	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DKH5	4.0e-230	83.82	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BSP2	1.2e-229	84.44	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UZJ7	1.6e-226	83.40	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TVR3	6.0e-226	82.78	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Cmc01g0022791 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.0e-27	58.25	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 298..318
None	No IPR available	GENE3D	3.10.20.370		coord: 174..239 e-value: 7.5E-7 score: 31.0
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..29 e-value: 3.3E-26 score: 93.9
None	No IPR available	GENE3D	1.10.340.70		coord: 308..400 e-value: 1.0E-18 score: 69.3
None	No IPR available	PANTHER	PTHR34072:SF9	ENZYMATIC POLYPROTEIN-RELATED	coord: 2..289
None	No IPR available	PANTHER	PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	coord: 73..446 coord: 2..289
None	No IPR available	PANTHER	PTHR34072:SF9	ENZYMATIC POLYPROTEIN-RELATED	coord: 73..446
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 174..289 e-value: 3.72547E-47 score: 156.499
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..79 e-value: 1.03609E-35 score: 128.097
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 13..97 e-value: 1.4E-15 score: 57.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..116 score: 13.979868
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 345..401 e-value: 1.7E-18 score: 66.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 95..173 e-value: 2.1E-27 score: 97.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..74 e-value: 3.3E-26 score: 93.9
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 143..237 e-value: 9.3E-30 score: 102.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..274

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0022791.1	Cmc01g0022791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding