Cmc01g0022421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0022421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr01: 21683680 .. 21684162 (+)
RNA-Seq Expression	Cmc01g0022421
Synteny	Cmc01g0022421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAATACGTTCTTGGTATCACAAATAGTTCAGAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAAATTTGTCAAGATATAAGATGCATAATTCCAAAAAAATTCTGTTGCGATATTGTTATGAAATTCATTTATCAAAAGAACAATGTCCGAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATATAATGTTAAGTACTAGACCTGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTAGACGTGATAATTGGACAACCGTTAAGAATATTCTAAAATATATTAGAAGAACAAAAGACTACATGCTTGTGTATAGTTCTGAGGATTTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCGGATCAGTTCTCACTCTAA

mRNA sequence

ATGCTCAATACGTTCTTGGTATCACAAATAGTTCAGAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAAATTTGTCAAGATATAAGATGCATAATTCCAAAAAAATTCTGTTGCGATATTGTTATGAAATTCATTTATCAAAAGAACAATGTCCGAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATATAATGTTAAGTACTAGACCTGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTAGACGTGATAATTGGACAACCGTTAAGAATATTCTAAAATATATTAGAAGAACAAAAGACTACATGCTTGTGTATAGTTCTGAGGATTTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCGGATCAGTTCTCACTCTAA

Coding sequence (CDS)

ATGCTCAATACGTTCTTGGTATCACAAATAGTTCAGAACCGAAAGAACAAAACACTAGTCATGTCTCAAACATCTTATATAGACAAAAATTTGTCAAGATATAAGATGCATAATTCCAAAAAAATTCTGTTGCGATATTGTTATGAAATTCATTTATCAAAAGAACAATGTCCGAAGACACCTCAAGAAGTTGAGGATATGAGTAACATTCCCTATGCTTCTGCTGTTGGGAGCCTGATGTATATAATGTTAAGTACTAGACCTGACATTTGCTATTCAGTAGGGATAGTTAGTAGATATCAGTCCAATCCTAGACGTGATAATTGGACAACCGTTAAGAATATTCTAAAATATATTAGAAGAACAAAAGACTACATGCTTGTGTATAGTTCTGAGGATTTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCGGATCAGTTCTCACTCTAA

Protein sequence

MLNTFLVSQIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMSNIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLVYSSEDLILTGYTDSDFQTDKDARKSTSDQFSL

Homology

[Close]

BLAST of Cmc01g0022421 vs. NCBI nr
Match: KAA0046768.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 6.3e-63
Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+N KNKTL MSQTSYIDK LSRYKM NSKK LL Y Y I LSKEQCPKTPQEVEDMS
Sbjct: 315 QIVRNEKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIDLSKEQCPKTPQEVEDMS 374

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASA+GSLMY ML TRPDICYSVGIVSRYQSNPRRD+WT VKNILKY RRTKDYMLV
Sbjct: 375 NIPYASAIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYHRRTKDYMLV 434

Query: 129 YSSEDLILTGYTDSDFQTDKDARKST 155
           Y S+DLILTGYTDSDFQTDKDARKST
Sbjct: 435 YGSKDLILTGYTDSDFQTDKDARKST 460

[Close]

BLAST of Cmc01g0022421 vs. NCBI nr
Match: KAA0050040.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.1 bits (640), Expect = 6.3e-63
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 8   SQIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDM 67
           + +V NRKNKTL MSQTSYIDK LSRYKMHNSKK LL Y Y IHLSKEQCPKTPQEVEDM
Sbjct: 226 NDVVWNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDM 285

Query: 68  SNIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYML 127
           SNIPYASAVGSLMY+ML TRP+ICYS+GIVSRYQS PRRD+WT VKNILKY+RRTKDYML
Sbjct: 286 SNIPYASAVGSLMYVMLCTRPNICYSIGIVSRYQSKPRRDHWTVVKNILKYLRRTKDYML 345

Query: 128 VYSSEDLILTGYTDSDFQTDKDARKSTS 156
           VY S+DLILTGYTD  FQTDKDARKSTS
Sbjct: 346 VYGSKDLILTGYTDFYFQTDKDARKSTS 373

[Close]

BLAST of Cmc01g0022421 vs. NCBI nr
Match: TYK06159.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 8.2e-63
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+NRKNKTL +SQTSYIDK LSRYKM NSKK LL Y Y IHLSKEQCPKTPQEVEDMS
Sbjct: 575 QIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMS 634

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASAVGSLM+ ML TRPDICYSV IVSRYQSNP RD+WTTVKNILKY+RRTKDYMLV
Sbjct: 635 NIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTVKNILKYLRRTKDYMLV 694

Query: 129 YSSEDLILTGYTDSDFQTDKDARKSTS 156
           Y S+DLILTGYTDS+FQTDKDARKSTS
Sbjct: 695 YGSKDLILTGYTDSNFQTDKDARKSTS 721

[Close]

BLAST of Cmc01g0022421 vs. NCBI nr
Match: KAA0025729.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 8.2e-63
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+NRKNKTL +SQTSYIDK LSRYKM NSKK LL Y Y IHLSKEQCPKTPQEVEDMS
Sbjct: 595 QIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMS 654

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASAVGSLM+ ML TRPDICYSV IVSRYQSNP RD+WTTVKNILKY+RRTKDYMLV
Sbjct: 655 NIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTVKNILKYLRRTKDYMLV 714

Query: 129 YSSEDLILTGYTDSDFQTDKDARKSTS 156
           Y S+DLILTGYTDS+FQTDKDARKSTS
Sbjct: 715 YGSKDLILTGYTDSNFQTDKDARKSTS 741

[Close]

BLAST of Cmc01g0022421 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 128/147 (87.07%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+NRKNKTL MSQTSYIDK LSRYKMHNSKK LL Y Y IHLSKEQCPKTPQEVEDMS
Sbjct: 465 QIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMS 524

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASAVGSLMY+ML TRP+ICYSVGIVSR QS P RD+WTTVKNILKY+RRTKDYMLV
Sbjct: 525 NIPYASAVGSLMYVMLCTRPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLV 584

Query: 129 YSSEDLILTGYTDSDFQTDKDARKSTS 156
           Y S+DLILTGYTD  FQTDKDARKSTS
Sbjct: 585 YGSKDLILTGYTDFYFQTDKDARKSTS 611

[Close]

BLAST of Cmc01g0022421 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-29
Identity = 66/147 (44.90%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 9    QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
            +IV+ R ++ L +SQ  YI++ L R+ M N+K +       + LSK+ CP T +E  +M+
Sbjct: 1048 KIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMA 1107

Query: 69   NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
             +PY+SAVGSLMY M+ TRPDI ++VG+VSR+  NP +++W  VK IL+Y+R T    L 
Sbjct: 1108 KVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLC 1167

Query: 129  YSSEDLILTGYTDSDFQTDKDARKSTS 156
            +   D IL GYTD+D   D D RKS++
Sbjct: 1168 FGGSDPILKGYTDADMAGDIDNRKSST 1194

[Close]

BLAST of Cmc01g0022421 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-15
Identity = 37/90 (41.11%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 67  MSNIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYM 126
           M N+PY SAVG++MY+M+ TRPD+  +VG++S++ S+P   +W  +K +L+Y++ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 127 LVYSSEDLI-LTGYTDSDFQTDKDARKSTS 156
           L ++      L GY+D+D+  D ++R+STS
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTS 90

[Close]

BLAST of Cmc01g0022421 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-14
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 0


Query: 19   LVMSQTSYIDKNLSRYKMHN----SKKILLRYCYEIHLSKEQCPKTPQEVEDMSNIPYAS 78
            + +SQ++Y+ K LS++ M N    S  +  +  YE+  S E C           N P  S
Sbjct: 1135 IYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-----------NTPCRS 1194

Query: 79   AVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLVYSSE-- 138
             +G LMYIML TRPD+  +V I+SRY S    + W  +K +L+Y++ T D  L++     
Sbjct: 1195 LIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLA 1254

Query: 139  -DLILTGYTDSDFQTDKDARKSTS 156
             +  + GY DSD+   +  RKST+
Sbjct: 1255 FENKIIGYVDSDWAGSEIDRKSTT 1267

[Close]

BLAST of Cmc01g0022421 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 45/147 (30.61%), Postives = 68/147 (46.26%), Query Frame = 0


Query: 10   IVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMSN 69
            I   R  + L +SQ  Y    L+R  M  +K +         L+     K P   E    
Sbjct: 1172 IEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTE---- 1231

Query: 70   IPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDY-MLV 129
              Y   VGSL Y+   TRPD+ Y+V  +S+Y   P  D+W  +K +L+Y+  T D+ + +
Sbjct: 1232 --YRGIVGSLQYLAF-TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFL 1291

Query: 130  YSSEDLILTGYTDSDFQTDKDARKSTS 156
                 L L  Y+D+D+  D D   ST+
Sbjct: 1292 KKGNTLSLHAYSDADWAGDTDDYVSTN 1311

[Close]

BLAST of Cmc01g0022421 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = 0


Query: 11  VQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMSNI 70
           +    N  + +S   YI K  S  +++  K      C     SK     T   ++D++  
Sbjct: 128 IHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCN----SKPLFETTSPHLKDIT-- 187

Query: 71  PYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLVY- 130
           PY S VG L++   + RPDI Y V ++SR+   PR  +  + + +L+Y+  T+   L Y 
Sbjct: 188 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 247

Query: 131 SSEDLILTGYTDSDFQTDKDARKSTSDQFSL 161
           S   L LT Y D+      D   ST    +L
Sbjct: 248 SGSQLALTVYCDASHGAIHDLPHSTGGYVTL 272

[Close]

BLAST of Cmc01g0022421 vs. ExPASy TrEMBL
Match: A0A5A7TV73 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00520 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63
Identity = 128/146 (87.67%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+N KNKTL MSQTSYIDK LSRYKM NSKK LL Y Y I LSKEQCPKTPQEVEDMS
Sbjct: 315 QIVRNEKNKTLAMSQTSYIDKMLSRYKMQNSKKGLLPYRYGIDLSKEQCPKTPQEVEDMS 374

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASA+GSLMY ML TRPDICYSVGIVSRYQSNPRRD+WT VKNILKY RRTKDYMLV
Sbjct: 375 NIPYASAIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYHRRTKDYMLV 434

Query: 129 YSSEDLILTGYTDSDFQTDKDARKST 155
           Y S+DLILTGYTDSDFQTDKDARKST
Sbjct: 435 YGSKDLILTGYTDSDFQTDKDARKST 460

[Close]

BLAST of Cmc01g0022421 vs. ExPASy TrEMBL
Match: A0A5A7U428 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00160 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 8   SQIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDM 67
           + +V NRKNKTL MSQTSYIDK LSRYKMHNSKK LL Y Y IHLSKEQCPKTPQEVEDM
Sbjct: 226 NDVVWNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDM 285

Query: 68  SNIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYML 127
           SNIPYASAVGSLMY+ML TRP+ICYS+GIVSRYQS PRRD+WT VKNILKY+RRTKDYML
Sbjct: 286 SNIPYASAVGSLMYVMLCTRPNICYSIGIVSRYQSKPRRDHWTVVKNILKYLRRTKDYML 345

Query: 128 VYSSEDLILTGYTDSDFQTDKDARKSTS 156
           VY S+DLILTGYTD  FQTDKDARKSTS
Sbjct: 346 VYGSKDLILTGYTDFYFQTDKDARKSTS 373

[Close]

BLAST of Cmc01g0022421 vs. ExPASy TrEMBL
Match: A0A5A7SKC9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00100 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.0e-63
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+NRKNKTL +SQTSYIDK LSRYKM NSKK LL Y Y IHLSKEQCPKTPQEVEDMS
Sbjct: 595 QIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMS 654

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASAVGSLM+ ML TRPDICYSV IVSRYQSNP RD+WTTVKNILKY+RRTKDYMLV
Sbjct: 655 NIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTVKNILKYLRRTKDYMLV 714

Query: 129 YSSEDLILTGYTDSDFQTDKDARKSTS 156
           Y S+DLILTGYTDS+FQTDKDARKSTS
Sbjct: 715 YGSKDLILTGYTDSNFQTDKDARKSTS 741

[Close]

BLAST of Cmc01g0022421 vs. ExPASy TrEMBL
Match: A0A5D3C701 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00080 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.0e-63
Identity = 128/147 (87.07%), Postives = 135/147 (91.84%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+NRKNKTL +SQTSYIDK LSRYKM NSKK LL Y Y IHLSKEQCPKTPQEVEDMS
Sbjct: 575 QIVRNRKNKTLAISQTSYIDKMLSRYKMQNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMS 634

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASAVGSLM+ ML TRPDICYSV IVSRYQSNP RD+WTTVKNILKY+RRTKDYMLV
Sbjct: 635 NIPYASAVGSLMHAMLCTRPDICYSVEIVSRYQSNPGRDHWTTVKNILKYLRRTKDYMLV 694

Query: 129 YSSEDLILTGYTDSDFQTDKDARKSTS 156
           Y S+DLILTGYTDS+FQTDKDARKSTS
Sbjct: 695 YGSKDLILTGYTDSNFQTDKDARKSTS 721

[Close]

BLAST of Cmc01g0022421 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 5.2e-63
Identity = 128/147 (87.07%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 9   QIVQNRKNKTLVMSQTSYIDKNLSRYKMHNSKKILLRYCYEIHLSKEQCPKTPQEVEDMS 68
           QIV+NRKNKTL MSQTSYIDK LSRYKMHNSKK LL Y Y IHLSKEQCPKTPQEVEDMS
Sbjct: 465 QIVRNRKNKTLAMSQTSYIDKMLSRYKMHNSKKGLLPYRYGIHLSKEQCPKTPQEVEDMS 524

Query: 69  NIPYASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLV 128
           NIPYASAVGSLMY+ML TRP+ICYSVGIVSR QS P RD+WTTVKNILKY+RRTKDYMLV
Sbjct: 525 NIPYASAVGSLMYVMLCTRPNICYSVGIVSRCQSKPGRDHWTTVKNILKYLRRTKDYMLV 584

Query: 129 YSSEDLILTGYTDSDFQTDKDARKSTS 156
           Y S+DLILTGYTD  FQTDKDARKSTS
Sbjct: 585 YGSKDLILTGYTDFYFQTDKDARKSTS 611

[Close]

BLAST of Cmc01g0022421 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 72  YASAVGSLMYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLVYSS 131
           Y   +G LMY+ + TR DI ++V  +S++   PR  +   V  IL YI+ T    L YSS
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 132 E-DLILTGYTDSDFQTDKDARKSTS 156
           + ++ L  ++D+ FQ+ KD R+ST+
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTN 461

[Close]

BLAST of Cmc01g0022421 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.8e-04
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 80  MYIMLSTRPDICYSVGIVSRYQSNPRRDNWTTVKNILKYIRRTKDYMLVYS-SEDLILTG 139
           MY+ + TRPD+ ++V  +S++ S  R      V  +L Y++ T    L YS + DL L  
Sbjct: 1   MYLTI-TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 140 YTDSDFQTDKDARKSTSDQFSL 161
           + DSD+ +  D R+S +   SL
Sbjct: 61  FADSDWASCPDTRRSVTGFCSL 81

The following BLAST results are available for this feature:

BLAST of Cmc01g0022421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046768.1	6.3e-63	87.67	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050040.1	6.3e-63	85.14	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK06159.1	8.2e-63	87.07	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025729.1	8.2e-63	87.07	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	1.1e-62	87.07	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0022421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.8e-29	44.90	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	8.6e-15	41.11	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	3.3e-14	34.72	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.6e-08	30.61	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.1e-06	28.48	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc01g0022421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV73	3.0e-63	87.67	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G0052...	[more]
A0A5A7U428	3.0e-63	85.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G0016...	[more]
A0A5A7SKC9	4.0e-63	87.07	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G0010...	[more]
A0A5D3C701	4.0e-63	87.07	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G0008...	[more]
A0A5D3BX45	5.2e-63	87.07	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]

BLAST of Cmc01g0022421 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.0e-07	37.65	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.8e-04	34.15	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 50..155
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 50..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0022421.1	Cmc01g0022421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding