Cmc01g0022181 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0022181
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr01: 21142432 .. 21142803 (+)
RNA-Seq Expression	Cmc01g0022181
Synteny	Cmc01g0022181

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAGAGGATATTGAAAAGACGACGTTTCGAACACACGAGGGCCACTATGAATTCCTGGTCATGCCATTTGGACTGACGAATGCCCCGGCCACTTTCCAATCCCTCATGAACCTGGTATTCAAACCATTCCTCAGACGCTGTGTACTGGTTTTTTCTTATAATATACTCATTTACAGTTCAGACATAACTGAGCATGAGAAGCACTTAGGTATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTACCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGTGGAAGTCGATCAGGATAAAGTACACAGCATGTTACAATGGCCCTAA

mRNA sequence

ATGAAAGAAGAGGATATTGAAAAGACGACGTTTCGAACACACGAGGGCCACTATGAATTCCTGGTCATGCCATTTGGACTGACGAATGCCCCGGCCACTTTCCAATCCCTCATGAACCTGGTATTCAAACCATTCCTCAGACGCTGTGTACTGGTTTTTTCTTATAATATACTCATTTACAGTTCAGACATAACTGAGCATGAGAAGCACTTAGGTATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTACCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGTGGAAGTCGATCAGGATAAAGTACACAGCATGTTACAATGGCCCTAA

Coding sequence (CDS)

ATGAAAGAAGAGGATATTGAAAAGACGACGTTTCGAACACACGAGGGCCACTATGAATTCCTGGTCATGCCATTTGGACTGACGAATGCCCCGGCCACTTTCCAATCCCTCATGAACCTGGTATTCAAACCATTCCTCAGACGCTGTGTACTGGTTTTTTCTTATAATATACTCATTTACAGTTCAGACATAACTGAGCATGAGAAGCACTTAGGTATGGTGTTTGCAGTATTGAGGGATAACCAGTTGTATGCTAATAGAAAAAAATGTGTGTTTACCCATTCCCAAATACAATATCTAGGCCATATCATATCCAAAAAAGGGGTGGAAGTCGATCAGGATAAAGTACACAGCATGTTACAATGGCCCTAA

Protein sequence

MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIYSSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSMLQWP

Homology

[Close]

BLAST of Cmc01g0022181 vs. NCBI nr
Match: KAA0065995.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 3.9e-57
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           MKEEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVL+F  +IL+Y
Sbjct: 590 MKEEDIEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLIFFDDILVY 649

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHE+HLGMVFA+LRDNQLYANRKKCVF HSQIQYLGHIISK GVE DQDKV SML
Sbjct: 650 SSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSML 709

Query: 121 QWP 124
           QWP
Sbjct: 710 QWP 712

[Close]

BLAST of Cmc01g0022181 vs. NCBI nr
Match: TYK28944.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.7e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. NCBI nr
Match: TYJ96663.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.7e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. NCBI nr
Match: TYK21035.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.7e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. NCBI nr
Match: TYK27058.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 5.7e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M EE I KT F T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+  +I+I+
Sbjct: 311 MDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIF 370

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           S+ +TEH   + +VF  L D  L     KC F   +  +LGHI++  G++ +  KV +++
Sbjct: 371 STSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIV 430

Query: 121 QWP 124
            +P
Sbjct: 431 SYP 433

[Close]

BLAST of Cmc01g0022181 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-22
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M  E + KT F T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+  +I+++
Sbjct: 312 MDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVF 371

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           S+ + EH + LG+VF  L    L     KC F   +  +LGH+++  G++ + +K+ ++ 
Sbjct: 372 STSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQ 431

Query: 121 QWP 124
           ++P
Sbjct: 432 KYP 434

[Close]

BLAST of Cmc01g0022181 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 47/123 (38.21%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           MKE DI KT F T  G YEFL +PFGL NAPA FQ +++ + +  + +   V+  +I+++
Sbjct: 228 MKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVF 287

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           S D   H K+L +V A L    L  N +K  F  +Q+++LG+I++  G++ D  KV ++ 
Sbjct: 288 SEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAIS 347

Query: 121 QWP 124
           + P
Sbjct: 348 EMP 350

[Close]

BLAST of Cmc01g0022181 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           +++ D  K  FR   G +E+LVMP+G++ APA FQ  +N +        V+ +  NILI+
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIH 571

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           S   +EH KH+  V   L++  L  N+ KC F  SQ++++G+ IS+KG    Q+ +  +L
Sbjct: 572 SKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVL 631

Query: 121 QW 123
           QW
Sbjct: 632 QW 633

[Close]

BLAST of Cmc01g0022181 vs. ExPASy Swiss-Prot
Match: P0CT42 (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 45/122 (36.89%), Postives = 72/122 (59.02%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           +++ D  K  FR   G +E+LVMP+G++ APA FQ  +N +        V+ +  NILI+
Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIH 571

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           S   +EH KH+  V   L++  L  N+ KC F  SQ++++G+ IS+KG    Q+ +  +L
Sbjct: 572 SKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVL 631

Query: 121 QW 123
           QW
Sbjct: 632 QW 633

[Close]

BLAST of Cmc01g0022181 vs. ExPASy TrEMBL
Match: A0A5A7VJU2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00290 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           MKEEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVL+F  +IL+Y
Sbjct: 590 MKEEDIEKTAFRTHEGHYEFMVMPFGLTNAPATFQSLMNQVFKPFLRRCVLIFFDDILVY 649

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHE+HLGMVFA+LRDNQLYANRKKCVF HSQIQYLGHIISK GVE DQDKV SML
Sbjct: 650 SSDITEHERHLGMVFAILRDNQLYANRKKCVFAHSQIQYLGHIISKHGVEADQDKVRSML 709

Query: 121 QWP 124
           QWP
Sbjct: 710 QWP 712

[Close]

BLAST of Cmc01g0022181 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. ExPASy TrEMBL
Match: A0A5D3DWA9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001670 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-56
Identity = 108/123 (87.80%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQSLMNLVFKPFLRRCVLVFSYNILIY 60
           M+EEDIEKT FRTHEGHYEF+VMPFGLTNAPATFQSLMN VFKPFLRRCVLVF  +IL+Y
Sbjct: 695 MREEDIEKTAFRTHEGHYEFVVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVY 754

Query: 61  SSDITEHEKHLGMVFAVLRDNQLYANRKKCVFTHSQIQYLGHIISKKGVEVDQDKVHSML 120
           SSDITEHEKHLGMVFA LRDNQLYANRKKCVF HSQI YLGH+ISK GVE DQDKV SML
Sbjct: 755 SSDITEHEKHLGMVFATLRDNQLYANRKKCVFAHSQIHYLGHVISKHGVEADQDKVKSML 814

Query: 121 QWP 124
           QWP
Sbjct: 815 QWP 817

[Close]

BLAST of Cmc01g0022181 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 70  HLGMVFAVLRDNQLYANRKKCVFTHSQIQYLG--HIISKKGVEVDQDKVHSMLQWP 124
           HLGMV  +   +Q YANRKKC F   QI YLG  HIIS +GV  D  K+ +M+ WP
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWP 58

The following BLAST results are available for this feature:

BLAST of Cmc01g0022181 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065995.1	3.9e-57	88.62	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28942.1 Ty3/gyp...	[more]
TYK28944.1	5.7e-56	87.80	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96663.1	5.7e-56	87.80	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21035.1	5.7e-56	87.80	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gyp...	[more]
TYK27058.1	5.7e-56	87.80	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0022181 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.0e-23	43.09	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.5e-22	39.02	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.5e-19	38.21	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q9UR07	2.4e-17	36.89	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT42	2.4e-17	36.89	Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0022181 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJU2	1.9e-57	88.62	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E325	2.8e-56	87.80	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH7	2.8e-56	87.80	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DZK6	2.8e-56	87.80	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWA9	2.8e-56	87.80	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc01g0022181 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.7e-10	53.57	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 12..104 e-value: 2.0E-16 score: 60.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..104 score: 10.085058
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 30..104 e-value: 2.5E-36 score: 127.0
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..29 e-value: 2.5E-36 score: 127.0
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..119
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..119
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..104 e-value: 1.13599E-47 score: 149.283
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0022181.1	Cmc01g0022181.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding