Cmc01g0021441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0021441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	LOB domain-containing protein
Location	CMiso1.1chr01: 20043935 .. 20046825 (-)
RNA-Seq Expression	Cmc01g0021441
Synteny	Cmc01g0021441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTCTCTAGCTGACTCATTTTTTCTTAATTTTGCCTTTTAATTTTCCCCCCAATACTTAAACAAAATTCACTTCTTTCTTTGAGTTTCAGTTTAATTCTTCATGTGGGTTTTACTCGCACAATATATTAGTACAGTTAATTAGCAAGCTAAGATCAATTTCAGAAGATAGTAATATTATTATAGTACTGATCATCAAATTAAATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGTTCATTCCAATGATCTCCTTTCTCTCTTTTATTCTGAGTAGGACAAAAATGATTTTTAACTATTGGAAAATCACTTAATTTAACCCATCAAGAATACGAGGATATCCTCATTAATTACCCTAAAAATGGTATTGCGATCTCTACTCATTTTCTCCTATATATTGAAAATAACTATGTTAGAAAATTAGGGAAAGTTTTTTTAGTACTGCTGCAATATCTATTTTTCCACCTCTCTTCTCATCGGATTCTATATCATTTCTAGTGGGGTGAGAATTTAATGATAGGAGTAATATGTGAATTGTTTTATTGTATTGAAATTTTTTTTTTAAAAACGAGTGAGATAATTATCTAATGTGTAGTTAATATTGAATTATGATCCAATCCAATATTTGCGTTAGAGAGTTTAAATCATTAGTCATGAATTTTGAGAATTTTTTTTTCTTTTGTCTATTTTTGTGGCTACCTAAAACTATGTAATTAATTTCATTTTGGTATCTAATCTAATAGCTGCTAAATTTAAAATTTGTAAAAACTACTTCATCATGTAGATATTATACATCTAAATTTTATGCCTAATAGAATTCAACAGTTCTAACTTTTTTTTTTTTTTGTCTAGTCCCTAATTTAGGGGCTAAAATTTGAATTTTGGAAATTGAAGGATTAAGAAAACTTATAATTTAATATAAAATATAAATTGTTTTGGCCAACCCAGTATAACGTGTCTTTTAGTAATGGAGTTCTTTCTCTACTTTTAAAAAGCAAGAGAAGGCTATCTTTTGCAAATTCTTCTACATCTCACATGTAAGAAAGAAAAGGGTTTGTTTTAGGTGTCCGGATTAGAGACGAATAATTTAAAAGGATTGCATGTTAAATTTTAATAAATGTTAAAAAAGAAAAAAAAAAAAAAGATGCTCTATTATGCTTGCTTATTCAGAGTGGAATTAATAAATCTATGTTTTTAGCTAGGTACTTTATCATTTTATTTGGTTTTTTTTTTTTTTTTAATTTTGAAATGTTTTCTTTAAAAAAGAAAAAACAAACAAAATTGGTCTCAAACTTTTGGTCGTGTGGGAATTGTTACAAGTGAGCACTCCAATAAAATGTAATTTATTTGAATTTACACTTTTTTGTTGTTGTGTGTTGTGTTGTTGGTTTTGGCGTGGGGTTAATAGAATGATAGAGATGTTTCGTCTAATAGGTGTGGCGGGAAACTTTTAACAAATCTAATATATACTTTTTAATCACTAACTATTGGCGTAATGCTGACGTTTTAATCATTTCTACAGTGAATGGAGGCTTAAACGTCATGTCGTCCATCTTTTCCATCTCCCCAGCTACACCGACAACGCCCTTTTAACCTTCTTCGTTTTTTAAGTCCAAAGTTATATATAAATATACATATATAGAAACATTTTTATACCAATCATCCATGTTCTATTTATTTGTAGTTGCTTAAATAATTAATGACACCCTTCAAAAATAAATGAAAGTTAACTCGTCAACAAGCACTTTGGGTTTTAACCTCTCTTCTAACCCTAATCAGATGGCCATCTTCATTTTCCTTTACTCCATTGCAGTATTTCGTGGGAGAAGTACAACAACGTTGTTGAAGAGGGAAGAAAACTTAAATTATGATAGATGTGGCCATCCTATTAGGGATATATAACTATTTCTGTGGCCAGAGAGAGATTAACGGATATAATGTAATATATAAATGTGGTGAGTGCGCTTTGACGTAAATATAAGGTTAGTTATCATTTATCTTTTTAGGATGGGTCATTGATCATTGATCATTTGAGGGACATTTGTACAAAAATTTCTCAAAACAACCTTGTTCTCTTTTATGTATTATATATTTAGGTGTAATGGATAAGTAAGAGTATACGAGAATTTGAACCTCTCGTGTTTAGAAAATGAGGACATGTGAAGTTCTTCGTCTCAATAATTATTTGTTTATTTTATTTTTTTACTTTTCTAGAAGCCTTGAATTATAGTTTAGAGAGTTTCCAGAATTGATATATGACAATTTTGTGATGGGCATGTTGAATAATCCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAGTAATTTCGTTCGTTTTGGCCCATTTTAATTATGACTATACTTTTACTTATTTATTGAAAAAACATATCTTGTTTTTTTTTCTAAATTTTACTAATAGCTTTTATTTGGCTACTAAGGGTGTCAATTTTTTTTCCTTCGTTTCTATTTT

mRNA sequence

TTCCTCTCTAGCTGACTCATTTTTTCTTAATTTTGCCTTTTAATTTTCCCCCCAATACTTAAACAAAATTCACTTCTTTCTTTGAGTTTCAGTTTAATTCTTCATGTGGGTTTTACTCGCACAATATATTAGTACAGTTAATTAGCAAGCTAAGATCAATTTCAGAAGATAGTAATATTATTATAGTACTGATCATCAAATTAAATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAGTAATTTCGTTCGTTTTGGCCCATTTTAATTATGACTATACTTTTACTTATTTATTGAAAAAACATATCTTGTTTTTTTTTCTAAATTTTACTAATAGCTTTTATTTGGCTACTAAGGGTGTCAATTTTTTTTCCTTCGTTTCTATTTT

Coding sequence (CDS)

ATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAG

Protein sequence

MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC

Homology

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BLAST of Cmc01g0021441 vs. NCBI nr
Match: XP_008447124.1 (PREDICTED: LOB domain-containing protein 4-like [Cucumis melo] >KAA0051088.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 314.3 bits (804), Expect = 6.0e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS
Sbjct: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ
Sbjct: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120

Query: 121 LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 161
           LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC
Sbjct: 121 LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 160

[Close]

BLAST of Cmc01g0021441 vs. NCBI nr
Match: XP_004139827.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN44269.1 hypothetical protein Csa_015717 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 5.3e-78
Identity = 155/162 (95.68%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MASSE--MMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60
           MASSE  MMM+GSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG
Sbjct: 1   MASSEMMMMMNGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60

Query: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQ 120
           ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVG ISCLQQQVDALQQQLAITQ
Sbjct: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQ 120

Query: 121 AQLVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 161
           AQLVQ+KMGQFTTTSQSSSSTDD L PPPNINVAASSSLWSC
Sbjct: 121 AQLVQMKMGQFTTTSQSSSSTDDLLPPPPNINVAASSSLWSC 162

[Close]

BLAST of Cmc01g0021441 vs. NCBI nr
Match: XP_038888383.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 276.2 bits (705), Expect = 1.8e-70
Identity = 145/162 (89.51%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 1   MASSE--MMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60
           MASSE  MMM+GSCKKG+G AAPCAACKLLRRRCA DCVFAPYFPAD PHKFSSVHKVFG
Sbjct: 1   MASSEMMMMMNGSCKKGSG-AAPCAACKLLRRRCAQDCVFAPYFPADQPHKFSSVHKVFG 60

Query: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQ 120
           ASNVSKLLQELPE QRSDAVSSMVYEANARIRDPVYGCVGTISCLQ+QVDALQQQLA+TQ
Sbjct: 61  ASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQQQLAMTQ 120

Query: 121 AQLVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 161
           AQLVQLKMGQFT+TSQSSSSTDD L  PPNIN+ AS SLWSC
Sbjct: 121 AQLVQLKMGQFTSTSQSSSSTDDLLPSPPNINMGASPSLWSC 161

[Close]

BLAST of Cmc01g0021441 vs. NCBI nr
Match: KAG7023005.1 (LOB domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-57
Identity = 121/151 (80.13%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 7   MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLL 66
           MM GSCKK  GA +PCAACKLLRRRC  DCVFAPYFPAD PHKFSSVHKVFGASNV+KLL
Sbjct: 5   MMKGSCKK--GAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLL 64

Query: 67  QELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 126
           QELPEQ RSDAVSSMVYEANARIRDP+YGCVGTISCLQ+QVDALQQQLA+TQAQL+  KM
Sbjct: 65  QELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKM 124

Query: 127 GQFTTTSQSSSSTDDFLSPPPNINVAASSSL 158
            QF+  SQ  SSTDD L  PPN NV + +SL
Sbjct: 125 AQFSLASQ-PSSTDDVLPSPPNTNVPSFTSL 152

[Close]

BLAST of Cmc01g0021441 vs. NCBI nr
Match: XP_022930643.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >KAG6589307.1 LOB domain-containing protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-57
Identity = 121/151 (80.13%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 7   MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLL 66
           MM GSCKK  GA +PCAACKLLRRRC  DCVFAPYFPAD PHKFSSVHKVFGASNV+KLL
Sbjct: 5   MMKGSCKK--GAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLL 64

Query: 67  QELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 126
           QELPEQ RSDAVSSMVYEANARIRDP+YGCVGTISCLQ+QVDALQQQLA+TQAQL+  KM
Sbjct: 65  QELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKM 124

Query: 127 GQFTTTSQSSSSTDDFLSPPPNINVAASSSL 158
            QF+  SQ  SSTDD L  PPN NV + +SL
Sbjct: 125 AQFSLASQ-PSSTDDVLPSPPNTNVPSFTSL 152

[Close]

BLAST of Cmc01g0021441 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-44
Identity = 99/173 (57.23%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 8   MSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQ 67
           M  S +K  GAA+PCAACKLLRRRCA DCVF+PYFPAD P KF++VH+VFGASNV+K+LQ
Sbjct: 1   MKESSRK-QGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 60

Query: 68  ELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMG 127
           ELP  QR DAVSSMVYEANAR+RDPVYGCVG IS LQQQ+D LQ QLA+ QA++V L++ 
Sbjct: 61  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 120

Query: 128 QFT----------TTSQSSSSTDDFLSPPPNINV----------AASSSLWSC 161
           Q T          + S S S +   +SP  N  +          +   S+WSC
Sbjct: 121 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWSC 172

[Close]

BLAST of Cmc01g0021441 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 166.0 bits (419), Expect = 3.5e-40
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 15  GNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQR 74
           G   ++PCA+CKLLRRRCA DC+FAPYFP D PHKF+ VHKVFGASNVSK+LQELP  QR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 75  SDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 127
           +DAV+S+V+EANAR+RDPVYGCVG IS LQ QV  LQ QLA+ QA+++ ++M
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 113

[Close]

BLAST of Cmc01g0021441 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-37
Identity = 87/156 (55.77%), Postives = 108/156 (69.23%), Query Frame = 0


Query: 20  APCAACKLLRRRCAHD-CVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAV 79
           +PCA CKLLRR+C  D CVFAPYFPA  P+KF+ VHK+FGASNV+K+LQEL E  RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 80  SSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQL--------KMGQFT 139
            SMVYEANARI+DPVYGCVGTIS L +Q++ LQ QLA  QA+L+ +        K   +T
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKPPPYT 132

Query: 140 TTSQSSSSTDDFLSPPPNINVA------ASSSLWSC 161
            ++ +  S  DF S   +I++A      A   LWSC
Sbjct: 133 ASTVTFPSNKDFYS---DIDMAVAYTDDAGDFLWSC 165

[Close]

BLAST of Cmc01g0021441 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 5.7e-35
Identity = 83/157 (52.87%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MA     MSG     N    PCAACKLLRRRCA +C F+PYF    PHKF+SVHKVFGAS
Sbjct: 26  MAGIRRPMSGPPGTLN-TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGAS 85

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSK+L E+PE QR+DA +S+VYEAN R+RDPVYGC+G IS LQQQV ALQ +L   +++
Sbjct: 86  NVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSE 145

Query: 121 LVQLKMGQFTTT--SQSSSSTDDF--------LSPPP 148
           +++ K  +   T    S+S    F        ++PPP
Sbjct: 146 ILKYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPP 181

[Close]

BLAST of Cmc01g0021441 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 8.3e-34
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 20  APCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVS 79
           +PCAACK+LRRRCA  CV APYFP   P KF+  H+VFGASN+ K LQELPE QR+DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 127
           SMVYEA AR+RDPVYGC G I  LQ+QV  LQ QLA TQ +LV +++
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQL 160

[Close]

BLAST of Cmc01g0021441 vs. ExPASy TrEMBL
Match: A0A5A7U720 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00280 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.9e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS
Sbjct: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ
Sbjct: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120

Query: 121 LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 161
           LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC
Sbjct: 121 LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 160

[Close]

BLAST of Cmc01g0021441 vs. ExPASy TrEMBL
Match: A0A1S3BGP4 (LOB domain-containing protein 4-like OS=Cucumis melo OX=3656 GN=LOC103489649 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.9e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS
Sbjct: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ
Sbjct: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120

Query: 121 LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 161
           LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC
Sbjct: 121 LVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 160

[Close]

BLAST of Cmc01g0021441 vs. ExPASy TrEMBL
Match: A0A0A0K5P4 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237840 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.6e-78
Identity = 155/162 (95.68%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MASSE--MMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60
           MASSE  MMM+GSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG
Sbjct: 1   MASSEMMMMMNGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60

Query: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQ 120
           ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVG ISCLQQQVDALQQQLAITQ
Sbjct: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQ 120

Query: 121 AQLVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 161
           AQLVQ+KMGQFTTTSQSSSSTDD L PPPNINVAASSSLWSC
Sbjct: 121 AQLVQMKMGQFTTTSQSSSSTDDLLPPPPNINVAASSSLWSC 162

[Close]

BLAST of Cmc01g0021441 vs. ExPASy TrEMBL
Match: A0A6J1EVU9 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111437046 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.2e-57
Identity = 121/151 (80.13%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 7   MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLL 66
           MM GSCKK  GA +PCAACKLLRRRC  DCVFAPYFPAD PHKFSSVHKVFGASNV+KLL
Sbjct: 5   MMKGSCKK--GAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLL 64

Query: 67  QELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 126
           QELPEQ RSDAVSSMVYEANARIRDP+YGCVGTISCLQ+QVDALQQQLA+TQAQL+  KM
Sbjct: 65  QELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKM 124

Query: 127 GQFTTTSQSSSSTDDFLSPPPNINVAASSSL 158
            QF+  SQ  SSTDD L  PPN NV + +SL
Sbjct: 125 AQFSLASQ-PSSTDDVLPSPPNTNVPSFTSL 152

[Close]

BLAST of Cmc01g0021441 vs. ExPASy TrEMBL
Match: A0A6J1HZU0 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111468420 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.7e-51
Identity = 115/147 (78.23%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 17  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 76
           GAA PCAACKLLRRRCA  CVFAPYFPA HPHK SSVH+VFGASNVSKLLQEL E QRSD
Sbjct: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61

Query: 77  AVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFTTTSQSS 136
           AVS MVYEANARIRD V GCVGTI+CLQ+QVDALQQ+LAITQAQL+QLKM QF  +S  S
Sbjct: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQF--SSAKS 121

Query: 137 SSTDDFLSPP---PNINVAASSSLWSC 161
           SS  + L PP    NINV AS SLWSC
Sbjct: 122 SSVGNLLLPPLPNININVGASPSLWSC 146

[Close]

BLAST of Cmc01g0021441 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 178.7 bits (452), Expect = 3.7e-45
Identity = 99/173 (57.23%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 8   MSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQ 67
           M  S +K  GAA+PCAACKLLRRRCA DCVF+PYFPAD P KF++VH+VFGASNV+K+LQ
Sbjct: 1   MKESSRK-QGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 60

Query: 68  ELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMG 127
           ELP  QR DAVSSMVYEANAR+RDPVYGCVG IS LQQQ+D LQ QLA+ QA++V L++ 
Sbjct: 61  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 120

Query: 128 QFT----------TTSQSSSSTDDFLSPPPNINV----------AASSSLWSC 161
           Q T          + S S S +   +SP  N  +          +   S+WSC
Sbjct: 121 QSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWSC 172

[Close]

BLAST of Cmc01g0021441 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-41
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 15  GNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQR 74
           G   ++PCA+CKLLRRRCA DC+FAPYFP D PHKF+ VHKVFGASNVSK+LQELP  QR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 75  SDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 127
           +DAV+S+V+EANAR+RDPVYGCVG IS LQ QV  LQ QLA+ QA+++ ++M
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 113

[Close]

BLAST of Cmc01g0021441 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-38
Identity = 87/156 (55.77%), Postives = 108/156 (69.23%), Query Frame = 0


Query: 20  APCAACKLLRRRCAHD-CVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAV 79
           +PCA CKLLRR+C  D CVFAPYFPA  P+KF+ VHK+FGASNV+K+LQEL E  RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 80  SSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQL--------KMGQFT 139
            SMVYEANARI+DPVYGCVGTIS L +Q++ LQ QLA  QA+L+ +        K   +T
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKPPPYT 132

Query: 140 TTSQSSSSTDDFLSPPPNINVA------ASSSLWSC 161
            ++ +  S  DF S   +I++A      A   LWSC
Sbjct: 133 ASTVTFPSNKDFYS---DIDMAVAYTDDAGDFLWSC 165

[Close]

BLAST of Cmc01g0021441 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 148.7 bits (374), Expect = 4.1e-36
Identity = 83/157 (52.87%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MA     MSG     N    PCAACKLLRRRCA +C F+PYF    PHKF+SVHKVFGAS
Sbjct: 26  MAGIRRPMSGPPGTLN-TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGAS 85

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSK+L E+PE QR+DA +S+VYEAN R+RDPVYGC+G IS LQQQV ALQ +L   +++
Sbjct: 86  NVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSE 145

Query: 121 LVQLKMGQFTTT--SQSSSSTDDF--------LSPPP 148
           +++ K  +   T    S+S    F        ++PPP
Sbjct: 146 ILKYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPP 181

[Close]

BLAST of Cmc01g0021441 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 144.8 bits (364), Expect = 5.9e-35
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 20  APCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVS 79
           +PCAACK+LRRRCA  CV APYFP   P KF+  H+VFGASN+ K LQELPE QR+DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 80  SMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 127
           SMVYEA AR+RDPVYGC G I  LQ+QV  LQ QLA TQ +LV +++
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQL 160

The following BLAST results are available for this feature:

BLAST of Cmc01g0021441 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447124.1	6.0e-82	100.00	PREDICTED: LOB domain-containing protein 4-like [Cucumis melo] >KAA0051088.1 LOB...	[more]
XP_004139827.1	5.3e-78	95.68	LOB domain-containing protein 4 [Cucumis sativus] >KGN44269.1 hypothetical prote...	[more]
XP_038888383.1	1.8e-70	89.51	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
KAG7023005.1	8.7e-57	80.13	LOB domain-containing protein 3, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022930643.1	8.7e-57	80.13	LOB domain-containing protein 4-like [Cucurbita moschata] >KAG6589307.1 LOB doma...	[more]

BLAST of Cmc01g0021441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	5.2e-44	57.23	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	3.5e-40	69.64	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	6.1e-37	55.77	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8L5T5	5.7e-35	52.87	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9SK08	8.3e-34	66.36	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]

BLAST of Cmc01g0021441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U720	2.9e-82	100.00	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BGP4	2.9e-82	100.00	LOB domain-containing protein 4-like OS=Cucumis melo OX=3656 GN=LOC103489649 PE=...	[more]
A0A0A0K5P4	2.6e-78	95.68	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237840 PE=3 SV...	[more]
A0A6J1EVU9	4.2e-57	80.13	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1HZU0	7.7e-51	78.23	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111468420...	[more]

BLAST of Cmc01g0021441 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	3.7e-45	57.23	LOB domain-containing protein 4	[more]
AT2G30130.1	2.5e-41	69.64	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	4.4e-38	55.77	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G40470.1	4.1e-36	52.87	LOB domain-containing protein 15	[more]
AT2G28500.1	5.9e-35	66.36	LOB domain-containing protein 11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 11..138
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 11..138
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 21..118 e-value: 5.7E-43 score: 145.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 20..121 score: 26.91749

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0021441.1	Cmc01g0021441.1	mRNA