Cmc01g0021071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0021071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr01: 19608252 .. 19608884 (+)
RNA-Seq Expression	Cmc01g0021071
Synteny	Cmc01g0021071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAAAATAAAGGTTCATCTGCATTTGTGTTGTCAGGAGGAACAAATCTTGCCAATTCTTGTGTAGCGATGCCTAAAACTGTTTGGCACAAACGGTTAGGACATCCTTCATCAAAAGTTTTGAACTCAGTTATAAAGAATTGTAACTTTCCTGTTAAAGACAATTTTGATGTTGAATTTTTTGATTCCTGTCAGTTGGGAAAAGCTCATAATCTTCCCTTTCCTAAATCTCAATCGCATGCTACTGCACCTTTTAATCTTGTTTATTCTGATTTATGGGGGCCAGTCCCAGTATGCTCTACTGATGGTTTTCGTTATTATATAATGTTTGTTGATGACTACAACAGGTATTCGTGGATTTATCCTCTTAAACAAAAGAGTGTTGCTGTTGAAGCTTTTAACCATTTTGTTATATATGTCAAAAATCAATTTAACAAATCTATTAAGGAGTTCCCATCAGACAACGGAGATGAGTATCATAAGATACATCAAATATGCTCAAATATGGGAATCAGTAGTAGATTATCTTGTCCTTATACTTCGGGTCAAAATGGAAGGGTAGAAAGAAAACATAGACAAACTTGGTTGAAACTGGACTTACACTGCTTGCTAAAGCAAATATTACATTAA

mRNA sequence

ATGCACAAAAATAAAGGTTCATCTGCATTTGTGTTGTCAGGAGGAACAAATCTTGCCAATTCTTGTGTAGCGATGCCTAAAACTGTTTGGCACAAACGGTTAGGACATCCTTCATCAAAAGTTTTGAACTCAGTTATAAAGAATTGTAACTTTCCTGTTAAAGACAATTTTGATGTTGAATTTTTTGATTCCTGTCAGTTGGGAAAAGCTCATAATCTTCCCTTTCCTAAATCTCAATCGCATGCTACTGCACCTTTTAATCTTGTTTATTCTGATTTATGGGGGCCAGTCCCAGTATGCTCTACTGATGGTTTTCGTTATTATATAATGTTTGTTGATGACTACAACAGGTATTCGTGGATTTATCCTCTTAAACAAAAGAGTGTTGCTGTTGAAGCTTTTAACCATTTTGTTATATATGTCAAAAATCAATTTAACAAATCTATTAAGGAGTTCCCATCAGACAACGGAGATGAGTATCATAAGATACATCAAATATGCTCAAATATGGGAATCAGTAGTAGATTATCTTGTCCTTATACTTCGGGTCAAAATGGAAGGGTAGAAAGAAAACATAGACAAACTTGGTTGAAACTGGACTTACACTGCTTGCTAAAGCAAATATTACATTAA

Coding sequence (CDS)

ATGCACAAAAATAAAGGTTCATCTGCATTTGTGTTGTCAGGAGGAACAAATCTTGCCAATTCTTGTGTAGCGATGCCTAAAACTGTTTGGCACAAACGGTTAGGACATCCTTCATCAAAAGTTTTGAACTCAGTTATAAAGAATTGTAACTTTCCTGTTAAAGACAATTTTGATGTTGAATTTTTTGATTCCTGTCAGTTGGGAAAAGCTCATAATCTTCCCTTTCCTAAATCTCAATCGCATGCTACTGCACCTTTTAATCTTGTTTATTCTGATTTATGGGGGCCAGTCCCAGTATGCTCTACTGATGGTTTTCGTTATTATATAATGTTTGTTGATGACTACAACAGGTATTCGTGGATTTATCCTCTTAAACAAAAGAGTGTTGCTGTTGAAGCTTTTAACCATTTTGTTATATATGTCAAAAATCAATTTAACAAATCTATTAAGGAGTTCCCATCAGACAACGGAGATGAGTATCATAAGATACATCAAATATGCTCAAATATGGGAATCAGTAGTAGATTATCTTGTCCTTATACTTCGGGTCAAAATGGAAGGGTAGAAAGAAAACATAGACAAACTTGGTTGAAACTGGACTTACACTGCTTGCTAAAGCAAATATTACATTAA

Protein sequence

MHKNKGSSAFVLSGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHRQTWLKLDLHCLLKQILH

Homology

[Close]

BLAST of Cmc01g0021071 vs. NCBI nr
Match: TYJ96768.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 2.6e-53
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 13  SGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHN 72
           S GTNLANSCVA+PKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEF DSCQLGKAHN
Sbjct: 167 SRGTNLANSCVAVPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFCDSCQLGKAHN 226

Query: 73  LPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNR 118
           LPFPKSQSHATAPFNLVYSDLWGP PVCSTD FRYYIMFVDDY+R
Sbjct: 227 LPFPKSQSHATAPFNLVYSDLWGPAPVCSTDSFRYYIMFVDDYSR 271

[Close]

BLAST of Cmc01g0021071 vs. NCBI nr
Match: MCH94186.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-48
Identity = 91/179 (50.84%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 15  GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLP 74
           GT    S     K  WH+RLGHP++KVL+ V+K+CN  V  + +  F ++CQ GK H LP
Sbjct: 20  GTKKNPSAYVSVKESWHRRLGHPNNKVLDKVLKSCNVKVPPSDNFSFCEACQYGKMHLLP 79

Query: 75  FPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAF 134
           F  S SHA  P  LV++D+WGP P+ ++ GF+YY+ FVDD++R++WIYPLKQKS  V+AF
Sbjct: 80  FKSSSSHAQEPLELVHTDVWGPAPIMTSTGFKYYVHFVDDFSRFTWIYPLKQKSETVQAF 139

Query: 135 NHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
             F    +NQFNK IK    D G EY  + ++    GI  R+SCPYTS QNGR ERKHR
Sbjct: 140 IQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHR 198

[Close]

BLAST of Cmc01g0021071 vs. NCBI nr
Match: PNY02796.1 (copia protein (gag-int-pol protein), partial [Trifolium pratense])

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-48
Identity = 87/175 (49.71%), Postives = 119/175 (68.00%), Query Frame = 0


Query: 20  NSCVAMP-KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKS 79
           ++C  M  K  WH++LGHP++KVL+ V+K+CN     +   +F ++CQ GK H LPF  S
Sbjct: 156 DACTYMSVKESWHRKLGHPNNKVLDKVLKHCNVKTSSSDQFKFCEACQFGKLHLLPFKSS 215

Query: 80  QSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFV 139
            SHA  P +L+++D+WGP P+ S  GF+YY+ F+DD++R++WIYPLKQKS  + AF  F 
Sbjct: 216 YSHAQEPLDLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFK 275

Query: 140 IYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
             V+NQFNK IK    D G EY  + ++    GI  R+SCPYTS QNGR ERKHR
Sbjct: 276 TLVENQFNKRIKIVQCDGGGEYKAVQKLALEAGIQFRMSCPYTSQQNGRAERKHR 330

[Close]

BLAST of Cmc01g0021071 vs. NCBI nr
Match: KYP50444.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 202.2 bits (513), Expect = 4.4e-48
Identity = 90/167 (53.89%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 27  KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPF 86
           K  WH++LGHP+SKVLN V+K CN       + EF ++CQ GKAHNLPF  S S A  P 
Sbjct: 364 KETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPL 423

Query: 87  NLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFN 146
           +LV+SD+WGP P+ S  GF+YY++F+DD++R++WIYPLKQKS   +AF  F   V+NQFN
Sbjct: 424 DLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFN 483

Query: 147 KSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
           K IK    D G E+  + ++    GI  R SCPYTS QNGR ERKHR
Sbjct: 484 KRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHR 530

[Close]

BLAST of Cmc01g0021071 vs. NCBI nr
Match: GAU19483.1 (hypothetical protein TSUD_77270 [Trifolium subterraneum])

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-47
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 0


Query: 15  GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLP 74
           GT    S     K  WH+RLGHP++KVL+ V+++C   V  + +  F ++CQ GK H LP
Sbjct: 421 GTKRNPSAFVSVKESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLP 480

Query: 75  FPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAF 134
           F  S SHA  P  LV++D+WGP P+ ++ GF+YY+ FVDD++R++WIYPLKQKS  V+AF
Sbjct: 481 FKSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAF 540

Query: 135 NHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
             F    +NQFNK IK    D G EY  + ++    GI  R+SCPYTS QNGR ERKHR
Sbjct: 541 IQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHR 599

[Close]

BLAST of Cmc01g0021071 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 73/176 (41.48%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 19  ANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPV-KDNFDVEFFDSCQLGKAHNLPFPK 78
           A+ C     + WH RLGHPS  +LNSVI N + PV   +  +     C + K+H +PF  
Sbjct: 435 ASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSN 494

Query: 79  SQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHF 138
           S   ++ P   +YSD+W   P+ S D +RYY++FVD + RY+W+YPLKQKS   + F  F
Sbjct: 495 STITSSKPLEYIYSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIF 554

Query: 139 VIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
              V+N+F   I    SDNG E+  +    S  GIS   S P+T   NG  ERKHR
Sbjct: 555 KSLVENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHR 609

[Close]

BLAST of Cmc01g0021071 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-33
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = 0


Query: 30  WHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFF--DSCQLGKAHNLPFPKSQSHATAPFN 89
           WH RLGHP+  +LNSVI N +  V  N   +F     C + K++ +PF +S  ++T P  
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVL-NPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLE 526

Query: 90  LVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFNK 149
            +YSD+W   P+ S D +RYY++FVD + RY+W+YPLKQKS   E F  F   ++N+F  
Sbjct: 527 YIYSDVWSS-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQT 586

Query: 150 SIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
            I  F SDNG E+  + +  S  GIS   S P+T   NG  ERKHR
Sbjct: 587 RIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHR 630

[Close]

BLAST of Cmc01g0021071 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-24
Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 0


Query: 7   SSAFVLSGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQ 66
           ++A +  G  N A   +++   +WHKR+GH S K L  + K           V+  D C 
Sbjct: 404 TNAEICQGELNAAQDEISV--DLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 463

Query: 67  LGKAHNLPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQ 126
            GK H + F  S        +LVYSD+ GP+ + S  G +Y++ F+DD +R  W+Y LK 
Sbjct: 464 FGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 523

Query: 127 KSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQ 186
           K    + F  F   V+ +  + +K   SDNG EY   +  + CS+ GI    + P T   
Sbjct: 524 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 583

Query: 187 NGRVERKHR 194
           NG  ER +R
Sbjct: 584 NGVAERMNR 590

[Close]

BLAST of Cmc01g0021071 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-18
Identity = 59/174 (33.91%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 29  VWHKRLGHPS-SKVLNSVIKN--CNFPVKDNFDV--EFFDSCQLGKAHNLPFP--KSQSH 88
           +WH+R GH S  K+L    KN   +  + +N ++  E  + C  GK   LPF   K ++H
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTH 476

Query: 89  ATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYV 148
              P  +V+SD+ GP+   + D   Y+++FVD +  Y   Y +K KS     F  FV   
Sbjct: 477 IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKS 536

Query: 149 KNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
           +  FN  +     DNG EY  +++ Q C   GIS  L+ P+T   NG  ER  R
Sbjct: 537 EAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIR 590

[Close]

BLAST of Cmc01g0021071 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-14
Identity = 48/192 (25.00%), Postives = 87/192 (45.31%), Query Frame = 0


Query: 17  NLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDS-------CQLGK 76
           N + S    P  + H+ LGH + + +   +K          D+E+ ++       C +GK
Sbjct: 581 NKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGK 640

Query: 77  AHNLPFPKSQ----SHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPL- 136
           +      K        +  PF  +++D++GPV         Y+I F D+  R+ W+YPL 
Sbjct: 641 STKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLH 700

Query: 137 -KQKSVAVEAFNHFVIYVKNQFNKSIKEFPSDNGDEY--HKIHQICSNMGISSRLSCPYT 194
            +++   +  F   + ++KNQFN  +     D G EY    +H+  +N GI++  +    
Sbjct: 701 DRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTAD 760

[Close]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL
Match: A0A5D3BEZ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00640 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 13  SGGTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHN 72
           S GTNLANSCVA+PKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEF DSCQLGKAHN
Sbjct: 167 SRGTNLANSCVAVPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFCDSCQLGKAHN 226

Query: 73  LPFPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNR 118
           LPFPKSQSHATAPFNLVYSDLWGP PVCSTD FRYYIMFVDDY+R
Sbjct: 227 LPFPKSQSHATAPFNLVYSDLWGPAPVCSTDSFRYYIMFVDDYSR 271

[Close]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL
Match: A0A392N2Z1 (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.6e-49
Identity = 91/179 (50.84%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 15  GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLP 74
           GT    S     K  WH+RLGHP++KVL+ V+K+CN  V  + +  F ++CQ GK H LP
Sbjct: 20  GTKKNPSAYVSVKESWHRRLGHPNNKVLDKVLKSCNVKVPPSDNFSFCEACQYGKMHLLP 79

Query: 75  FPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAF 134
           F  S SHA  P  LV++D+WGP P+ ++ GF+YY+ FVDD++R++WIYPLKQKS  V+AF
Sbjct: 80  FKSSSSHAQEPLELVHTDVWGPAPIMTSTGFKYYVHFVDDFSRFTWIYPLKQKSETVQAF 139

Query: 135 NHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
             F    +NQFNK IK    D G EY  + ++    GI  R+SCPYTS QNGR ERKHR
Sbjct: 140 IQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHR 198

[Close]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL
Match: A0A2K3NIC3 (Copia protein (Gag-int-pol protein) (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026116 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 87/175 (49.71%), Postives = 119/175 (68.00%), Query Frame = 0


Query: 20  NSCVAMP-KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKS 79
           ++C  M  K  WH++LGHP++KVL+ V+K+CN     +   +F ++CQ GK H LPF  S
Sbjct: 156 DACTYMSVKESWHRKLGHPNNKVLDKVLKHCNVKTSSSDQFKFCEACQFGKLHLLPFKSS 215

Query: 80  QSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFV 139
            SHA  P +L+++D+WGP P+ S  GF+YY+ F+DD++R++WIYPLKQKS  + AF  F 
Sbjct: 216 YSHAQEPLDLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQFK 275

Query: 140 IYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
             V+NQFNK IK    D G EY  + ++    GI  R+SCPYTS QNGR ERKHR
Sbjct: 276 TLVENQFNKRIKIVQCDGGGEYKAVQKLALEAGIQFRMSCPYTSQQNGRAERKHR 330

[Close]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL
Match: A0A151S6M8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_027809 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 90/167 (53.89%), Postives = 115/167 (68.86%), Query Frame = 0


Query: 27  KTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLPFPKSQSHATAPF 86
           K  WH++LGHP+SKVLN V+K CN       + EF ++CQ GKAHNLPF  S S A  P 
Sbjct: 364 KETWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEACQFGKAHNLPFQNSVSCAKEPL 423

Query: 87  NLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAFNHFVIYVKNQFN 146
           +LV+SD+WGP P+ S  GF+YY++F+DD++R++WIYPLKQKS   +AF  F   V+NQFN
Sbjct: 424 DLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNLVENQFN 483

Query: 147 KSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
           K IK    D G E+  + ++    GI  R SCPYTS QNGR ERKHR
Sbjct: 484 KRIKTLQCDGGGEFKSLSKVLIKTGIQLRESCPYTSAQNGRAERKHR 530

[Close]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL
Match: A0A2Z6MBG6 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_77270 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 6.2e-48
Identity = 89/179 (49.72%), Postives = 118/179 (65.92%), Query Frame = 0


Query: 15  GTNLANSCVAMPKTVWHKRLGHPSSKVLNSVIKNCNFPVKDNFDVEFFDSCQLGKAHNLP 74
           GT    S     K  WH+RLGHP++KVL+ V+++C   V  + +  F ++CQ GK H LP
Sbjct: 421 GTKRNPSAFVSVKESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFSFCEACQYGKMHLLP 480

Query: 75  FPKSQSHATAPFNLVYSDLWGPVPVCSTDGFRYYIMFVDDYNRYSWIYPLKQKSVAVEAF 134
           F  S SHA  P  LV++D+WGP P+ ++ GF+YY+ FVDD++R++WIYPLKQKS  V+AF
Sbjct: 481 FKSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTWIYPLKQKSETVQAF 540

Query: 135 NHFVIYVKNQFNKSIKEFPSDNGDEYHKIHQICSNMGISSRLSCPYTSGQNGRVERKHR 194
             F    +NQFNK IK    D G EY  + ++    GI  R+SCPYTS QNGR ERKHR
Sbjct: 541 IQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPYTSQQNGRAERKHR 599

The following BLAST results are available for this feature:

BLAST of Cmc01g0021071 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96768.1	2.6e-53	94.29	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
MCH94186.1	1.2e-48	50.84	retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium]	[more]
PNY02796.1	2.6e-48	49.71	copia protein (gag-int-pol protein), partial [Trifolium pratense]	[more]
KYP50444.1	4.4e-48	53.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
GAU19483.1	1.3e-47	49.72	hypothetical protein TSUD_77270 [Trifolium subterraneum]	[more]

BLAST of Cmc01g0021071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.1e-33	41.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.0e-33	43.37	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	4.6e-24	32.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.9e-18	33.91	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	9.6e-14	25.00	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEZ6	1.3e-53	94.29	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A392N2Z1	5.6e-49	50.84	Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Trifol...	[more]
A0A2K3NIC3	1.2e-48	49.71	Copia protein (Gag-int-pol protein) (Fragment) OS=Trifolium pratense OX=57577 GN...	[more]
A0A151S6M8	2.1e-48	53.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A2Z6MBG6	6.2e-48	49.72	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]

BLAST of Cmc01g0021071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 83..181 e-value: 1.9E-10 score: 41.0
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 81..210 score: 15.645434
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 29..70 e-value: 8.0E-11 score: 41.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 77..209 e-value: 3.2E-23 score: 84.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 19..184
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 19..184
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 81..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0021071.1	Cmc01g0021071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding