Cmc01g0019681 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0019681
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein RADIALIS-like 1
Location	CMiso1.1chr01: 17588015 .. 17589328 (-)
RNA-Seq Expression	Cmc01g0019681
Synteny	Cmc01g0019681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATTAAAGTTAGAAATATACATTTAAGAAAATAAAAGTATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGAAAGCTTTGGCAATGTATGATAAAGACACACCCGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAGGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAACCTCAAGAGGCAATTAAGTGCTACTAACATATGATCAAAAGATGGAGGTAATTTAATTTTATTTCGTCTCCACTTCATAATAATTTTTTACGTAATTTTTGATGAAACGTTTTTTATATTGTACGTATAGAAAATTTAATAAATATTTAAAAAACATAAATATATATATATATATATATATATATATTAATAGTTTTGTGAATGTGAGTTTATCTCAATAATAATTATCAAAACTTTTTACTCATTTTGTTATTTAAAGATTTAAAAACTCACTTATGCTGAGAAAACAAGAAACAATATATGAGAAATAAGAAACTTAAACATTACTAGATAAACCATTTTTTTTCTTTTTTTCTCTTTTCATTTTTCAAAAGATTAAGCTTGTTGTAACAGTTCCATCCATTTGTGTTTGTTTACTACTCTTAAAAGAAAATTTTCCAAAAGAAAAAAAAAAAGAAGAAAAGAAGAAAAGAAGTTTTAAAGTTTTTTTTTTTTTTTAAATTTAAGTGATCGGAGTTTAAATGTAATTTTAGAGAATGCAAAAGATATACAATAAATATTTTTTGAAATTAAAACAAGAAAATTGGAGTCTTATATTCTATGAAAAAGCCTATCTAACCATTTGACTCTTTATCTTATTCTGAAGCCACAAATATTGTAGCCTTTAATTTATTCATACATACTGCAGAGCCATAGTTTCATTATCAGTGAACAGTGACCTCATTTCTCATAGATTTAAAGCCAGATTCAGAAACAAAAAGAAAAGACAATAAAATCTTTACTAATAATTGAGAAAGGACAAAATTGTTTTCGTTTTTTTTTTGTATCAAAGTATTGATATAATTAAATTTATCTCTATTTCTTTGACCTTTTTTCAGGATGAGAAACATGAAGTTGAATGAAGCCAGGTGCACGCAGTACTGGAAGAATAAAAAGGACAGAGCCATTTTCTTGCTGTTGCATACCTTTTTTTTTTCCCTATTTTATCTTTTCAAATCCAATTGCAGTAGGTCAAATGAATAAGCTTTTATGAATTTATTATATTAAATC

mRNA sequence

CCCAATTAAAGTTAGAAATATACATTTAAGAAAATAAAAGTATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGAAAGCTTTGGCAATGTATGATAAAGACACACCCGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAGGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAACCTCAAGAGGCAATTAAGTGCTACTAACATATGATCAAAAGATGGAGGATGAGAAACATGAAGTTGAATGAAGCCAGGTGCACGCAGTACTGGAAGAATAAAAAGGACAGAGCCATTTTCTTGCTGTTGCATACCTTTTTTTTTTCCCTATTTTATCTTTTCAAATCCAATTGCAGTAGGTCAAATGAATAAGCTTTTATGAATTTATTATATTAAATC

Coding sequence (CDS)

ATGGCTTCAATGTCAGCTCATGGGTCAGGTGTATGGACTGCAAAGCAAAACAAGGCATTTGAGAAAGCTTTGGCAATGTATGATAAAGACACACCCGATAGATGGTTGAATGTTGCAAAAGCCATTGGTGGAAAAACTGAAGAGGAAGTCAAAAGGCATTACCAACTTCTTTTGGAGGATGTTAAGCATATTGAGTCTGGCAAAGTTCCTTTTCCTTATAGAACCTCAAGAGGCAATTAA

Protein sequence

MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKHIESGKVPFPYRTSRGN

Homology

[Close]

BLAST of Cmc01g0019681 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYRTSRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of Cmc01g0019681 vs. NCBI nr
Match: KAA0036170.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 5.0e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYRTSRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of Cmc01g0019681 vs. NCBI nr
Match: XP_004151116.1 (protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_020265 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of Cmc01g0019681 vs. NCBI nr
Match: XP_022952073.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-like 1 [Cucurbita maxima] >XP_023554705.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572043.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 3.9e-34
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYR+SRG+
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of Cmc01g0019681 vs. NCBI nr
Match: XP_022135728.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSA+ SG WTAKQNKAFEKALA+YD+DTP+RW+NVAKAIG KTEEEVKRHYQ L+ED
Sbjct: 1  MASMSAYESGTWTAKQNKAFEKALAVYDQDTPNRWVNVAKAIGDKTEEEVKRHYQRLVED 60

Query: 61 VKHIESGKVPFPYRTSRG 79
          VKHIESG VPFPYRTSRG
Sbjct: 61 VKHIESGDVPFPYRTSRG 78

[Close]

BLAST of Cmc01g0019681 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 7.0e-26
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 2  ASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +SMS+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRTSRG 79
            IE+G VPFP YRTS G
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Cmc01g0019681 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 54/77 (70.13%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 5  SAHGSG-VWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVKH 64
          S  GSG  W+AK+NKAFE+ALA+YDKDTPDRW NVA+A+ G+T EEVK+HY++L+ED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGKVPFP-YRTSRGN 80
          IESGKVPFP YRT+ GN
Sbjct: 63 IESGKVPFPNYRTTGGN 79

[Close]

BLAST of Cmc01g0019681 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 3  SMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          SMS++GSG WT KQNKAFE+ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRTSRGN 80
           IE+G VPFP Y+T+ GN
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Cmc01g0019681 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT K+NK FE+ALA YD+DTPDRW NVA+A+GGK+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          V  IESG+ P P   S GN
Sbjct: 61 VNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Cmc01g0019681 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE+ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRTSRGN 80
          + +IE+G+VP P Y+T   N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Cmc01g0019681 vs. ExPASy TrEMBL
Match: A0A1S3BGF6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.3e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYRTSRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of Cmc01g0019681 vs. ExPASy TrEMBL
Match: A0A5A7SYM4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00290 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYRTSRGN
Sbjct: 61 VKHIESGKVPFPYRTSRGN 79

[Close]

BLAST of Cmc01g0019681 vs. ExPASy TrEMBL
Match: A0A0A0K344 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.7e-36
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS+SAHGSGVWTAKQNKAFE+ALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYR+SR N
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of Cmc01g0019681 vs. ExPASy TrEMBL
Match: A0A6J1IA78 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYR+SRG+
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of Cmc01g0019681 vs. ExPASy TrEMBL
Match: A0A6J1GJG0 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MASMSAHGSGVWTAKQNKAFE+ALAMYD+D PDRWLNVAKAIGGKTEEEVKRHYQ+L+ED
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEEALAMYDQDRPDRWLNVAKAIGGKTEEEVKRHYQVLVED 60

Query: 61 VKHIESGKVPFPYRTSRGN 80
          VKHIESGKVPFPYR+SRG+
Sbjct: 61 VKHIESGKVPFPYRSSRGS 79

[Close]

BLAST of Cmc01g0019681 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 117.5 bits (293), Expect = 5.0e-27
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 2  ASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDV 61
          +SMS+  SG WTAKQNKAFE+ALA YD+DTP+RW NVAK +GGKT EEVKRHY+LL++D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGKVPFP-YRTSRG 79
            IE+G VPFP YRTS G
Sbjct: 64 NSIENGHVPFPNYRTSGG 81

[Close]

BLAST of Cmc01g0019681 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-26
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 3  SMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLEDVK 62
          SMS++GSG WT KQNKAFE+ALA+YD+DTPDRW NVA+A+GGKT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGKVPFP-YRTSRGN 80
           IE+G VPFP Y+T+ GN
Sbjct: 65 SIENGHVPFPDYKTTTGN 82

[Close]

BLAST of Cmc01g0019681 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE+ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRTSRGN 80
          + +IE+G+VP P Y+T   N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Cmc01g0019681 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S      WT  QNK FE+ALA+YDKDTPDRW NVAKA+GGKT EEVKRHY +L+ED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRTSRGN 80
          + +IE+G+VP P Y+T   N
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of Cmc01g0019681 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 103.2 bits (256), Expect = 9.7e-23
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60
          MAS S   S  WT+KQNK FE+ALA+YDKDTPDRW NVAKA+G K+ EEVKRHY +L+ED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGKVPFP-YRT 76
          + +IE   VP P Y+T
Sbjct: 61 LMNIEQDLVPLPKYKT 76

The following BLAST results are available for this feature:

BLAST of Cmc01g0019681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447025.1	1.7e-37	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
KAA0036170.1	5.0e-37	98.73	protein RADIALIS-like 1 [Cucumis melo var. makuwa]	[more]
XP_004151116.1	1.6e-35	94.94	protein RADIALIS-like 1 [Cucumis sativus] >KGN44075.1 hypothetical protein Csa_0...	[more]
XP_022952073.1	3.9e-34	91.14	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022972518.1 protein RADIALIS-li...	[more]
XP_022135728.1	2.6e-30	85.90	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of Cmc01g0019681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	7.0e-26	70.51	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	1.2e-25	70.13	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	1.6e-25	67.95	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q6NNN0	2.1e-22	62.03	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	2.1e-22	63.75	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Cmc01g0019681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGF6	8.3e-38	100.00	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1	[more]
A0A5A7SYM4	2.4e-37	98.73	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K344	7.7e-36	94.94	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169070 PE=4 S...	[more]
A0A6J1IA78	1.9e-34	91.14	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471063 PE=4 SV=1	[more]
A0A6J1GJG0	1.9e-34	91.14	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454835 PE=4 SV=1	[more]

BLAST of Cmc01g0019681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	5.0e-27	70.51	RAD-like 1	[more]
AT2G21650.1	1.1e-26	67.95	Homeodomain-like superfamily protein	[more]
AT1G75250.1	1.5e-23	63.75	RAD-like 6	[more]
AT1G75250.2	1.5e-23	63.75	RAD-like 6	[more]
AT1G19510.1	9.7e-23	64.47	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.6E-8 score: 44.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 10..58 score: 6.434677
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 3.02886E-7 score: 40.6366
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 6.6E-24 score: 85.5
None	No IPR available	PANTHER	PTHR43952:SF74	PROTEIN RADIALIS-LIKE 2	coord: 5..75
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..58 e-value: 8.0E-7 score: 29.2
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 5..75
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 10.413081
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0019681.1	Cmc01g0019681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity