Cmc01g0019571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0019571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 17441001 .. 17441750 (-)
RNA-Seq Expression	Cmc01g0019571
Synteny	Cmc01g0019571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTAGTAGAAGGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCTATTGCATCGAGAATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGGCAGTCTCTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAAGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCATGGCCTAGCAGAGGCAGGGCAAGCTATTGAGTTTTCCATATCCTCTGATGGTGGACTTTTGTTTGAAAGGCGCCTCTGTGTGCCGTCAGATAGTGAGGTTAAGACAGAATTATTATCCGAGGCTCACAGTTTCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGTGGGTCTATTGGTGGTGTAATATGAAGAGGGAGGTGGCGAAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCTTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTGGTTGACAAGCTTACCAAATCAGCGCATTTCGTTCCGGTTAAATCCACCTATACTGCTAGTAAGTGGGCACAACTATACATATCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCATTTCACTTCCAAATTCTAG

mRNA sequence

ATGCTCTTAGTAGAAGGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCTATTGCATCGAGAATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGGCAGTCTCTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAAGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCATGGCCTAGCAGAGGCAGGGCAAGCTATTGAGTTTTCCATATCCTCTGATGGTGGACTTTTGTTTGAAAGGCGCCTCTGTGTGCCGTCAGATAGTGAGGTTAAGACAGAATTATTATCCGAGGCTCACAGTTTCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGTGGGTCTATTGGTGGTGTAATATGAAGAGGGAGGTGGCGAAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCTTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTGGTTGACAAGCTTACCAAATCAGCGCATTTCGTTCCGGTTAAATCCACCTATACTGCTAGTAAGTGGGCACAACTATACATATCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCATTTCACTTCCAAATTCTAG

Coding sequence (CDS)

ATGCTCTTAGTAGAAGGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCTATTGCATCGAGAATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAGGGGCAGTCTCTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAAGATCATTGATGCTCAGAGTAACGATCCTTATTTGGTTGAGAAGCATGGCCTAGCAGAGGCAGGGCAAGCTATTGAGTTTTCCATATCCTCTGATGGTGGACTTTTGTTTGAAAGGCGCCTCTGTGTGCCGTCAGATAGTGAGGTTAAGACAGAATTATTATCCGAGGCTCACAGTTTCCCATTTTCCATGCACCCGGGTAGTACGAAGATGTATCAGGACCTGAAGTGGGTCTATTGGTGGTGTAATATGAAGAGGGAGGTGGCGAAATTTGTTAGTAAATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCTTTGAGCGTACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCAAGAACTCTGAAGGGTTTTACAGTGATTTGGGTTGTGGTTGACAAGCTTACCAAATCAGCGCATTTCGTTCCGGTTAAATCCACCTATACTGCTAGTAAGTGGGCACAACTATACATATCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCATTTCACTTCCAAATTCTAG

Protein sequence

MLLVEGYHIQQHLLPDRPYCIENLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISSDGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKFVSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLTKSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF

Homology

[Close]

BLAST of Cmc01g0019571 vs. NCBI nr
Match: KAA0036553.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 425.2 bits (1092), Expect = 3.8e-115
Identity = 209/227 (92.07%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 864  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 923

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 924  DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 983

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
             S+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLKGFTVIWVVVD+LT
Sbjct: 984  FSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 1043

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1044 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 1090

[Close]

BLAST of Cmc01g0019571 vs. NCBI nr
Match: KAA0062112.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.9 bits (1091), Expect = 4.9e-115
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 1076 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 1135

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 1136 DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 1195

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            VS+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 1196 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 1255

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYT+SKWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1256 KSAHFVPGKSTYTSSKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 1302

[Close]

BLAST of Cmc01g0019571 vs. NCBI nr
Match: KAA0062835.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.9 bits (1091), Expect = 4.9e-115
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 23  NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
           +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 257 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 316

Query: 83  DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
           DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 317 DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 376

Query: 143 VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
           VS+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 377 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 436

Query: 203 KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
           KSAHFVP KSTYTA+KWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 437 KSAHFVPGKSTYTANKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 483

[Close]

BLAST of Cmc01g0019571 vs. NCBI nr
Match: KAA0059062.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.5 bits (1090), Expect = 6.4e-115
Identity = 207/227 (91.19%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 1021 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 1080

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS +KTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 1081 DGGLLFERRLCVPSDSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 1140

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            VS+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 1141 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 1200

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYTASKWA+LY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1201 KSAHFVPGKSTYTASKWAELYMSEIVRLHGVPVSIVSDRDARFTSKF 1247

[Close]

BLAST of Cmc01g0019571 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 424.1 bits (1089), Expect = 8.4e-115
Identity = 209/227 (92.07%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQ  EFS+SS
Sbjct: 1254 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSS 1313

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 1314 DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 1373

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            VSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 1374 VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 1433

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1434 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 1480

[Close]

BLAST of Cmc01g0019571 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-24
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            D  + ++ RL VP   +     L   H+  F  H G T     +  +Y+W  ++  + ++
Sbjct: 1080 DEMIYYQDRLVVPIKQQNAVMRLYHDHTL-FGGHFGVTVTLAKISPIYYWPKLQHSIIQY 1139

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            +  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I VVVD+ +
Sbjct: 1140 IRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFS 1199

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTS 248
            K AHF+  + T  A++   L    I   HG P +I SDRD   T+
Sbjct: 1200 KRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTA 1243

[Close]

BLAST of Cmc01g0019571 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-24
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            D  + ++ RL VP   +     L   H+  F  H G T     +  +Y+W  ++  + ++
Sbjct: 1106 DEMIYYQDRLVVPIKQQNAVMRLYHDHTL-FGGHFGVTVTLAKISPIYYWPKLQHSIIQY 1165

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            +  C+ CQ +K+ R +  GLLQPL + E +W ++SMDF+TGLP T     +I VVVD+ +
Sbjct: 1166 IRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFS 1225

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTS 248
            K AHF+  + T  A++   L    I   HG P +I SDRD   T+
Sbjct: 1226 KRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTA 1269

[Close]

BLAST of Cmc01g0019571 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 59/209 (28.23%), Postives = 112/209 (53.59%), Query Frame = 0


Query: 42   QLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISSDGGLLFERR--LCVPSDSE 101
            Q+++    + +++   +ND  L+    L    + +E +I    GLL   +  + +P+D++
Sbjct: 853  QISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQ 912

Query: 102  VKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKFVSKCLVCQQVKAPRQKP 161
            +   ++ + H     +HPG   +   +   + W  +++++ ++V  C  CQ  K+   KP
Sbjct: 913  LTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKP 972

Query: 162  AGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLTKSAHFVPVKSTYTASKW 221
             G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + 
Sbjct: 973  YGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1032

Query: 222  AQLYISEIVRLHGVPVSIVSDRDAHFTSK 249
            A+++   ++   G P  I++D D  FTS+
Sbjct: 1033 ARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc01g0019571 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 59/209 (28.23%), Postives = 112/209 (53.59%), Query Frame = 0


Query: 42   QLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISSDGGLLFERR--LCVPSDSE 101
            Q+++    + +++   +ND  L+    L    + +E +I    GLL   +  + +P+D++
Sbjct: 853  QISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQ 912

Query: 102  VKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKFVSKCLVCQQVKAPRQKP 161
            +   ++ + H     +HPG   +   +   + W  +++++ ++V  C  CQ  K+   KP
Sbjct: 913  LTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKP 972

Query: 162  AGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLTKSAHFVPVKSTYTASKW 221
             G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + 
Sbjct: 973  YGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1032

Query: 222  AQLYISEIVRLHGVPVSIVSDRDAHFTSK 249
            A+++   ++   G P  I++D D  FTS+
Sbjct: 1033 ARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc01g0019571 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 59/209 (28.23%), Postives = 112/209 (53.59%), Query Frame = 0


Query: 42   QLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISSDGGLLFERR--LCVPSDSE 101
            Q+++    + +++   +ND  L+    L    + +E +I    GLL   +  + +P+D++
Sbjct: 853  QISITDDFKNQVVTEYTNDTKLLNL--LNNEDKRVEENIQLKDGLLINSKDQILLPNDTQ 912

Query: 102  VKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKFVSKCLVCQQVKAPRQKP 161
            +   ++ + H     +HPG   +   +   + W  +++++ ++V  C  CQ  K+   KP
Sbjct: 913  LTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKP 972

Query: 162  AGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLTKSAHFVPVKSTYTASKW 221
             G LQP+   E  WE++SMDFIT LP +  G+  ++VVVD+ +K A  VP   + TA + 
Sbjct: 973  YGPLQPIPPSERPWESLSMDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQT 1032

Query: 222  AQLYISEIVRLHGVPVSIVSDRDAHFTSK 249
            A+++   ++   G P  I++D D  FTS+
Sbjct: 1033 ARMFDQRVIAYFGNPKEIIADNDHIFTSQ 1058

[Close]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL
Match: A0A5A7T0Y9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00570 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 209/227 (92.07%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 864  DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 923

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 924  DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 983

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
             S+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTLKGFTVIWVVVD+LT
Sbjct: 984  FSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLKGFTVIWVVVDRLT 1043

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1044 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 1090

[Close]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL
Match: A0A5A7VAA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold100G00010 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 23  NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
           +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 257 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 316

Query: 83  DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
           DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 317 DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 376

Query: 143 VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
           VS+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 377 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 436

Query: 203 KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
           KSAHFVP KSTYTA+KWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 437 KSAHFVPGKSTYTANKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 483

[Close]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL
Match: A0A5A7V1N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004680 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.4e-115
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 1076 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 1135

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 1136 DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 1195

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            VS+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 1196 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 1255

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYT+SKWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1256 KSAHFVPGKSTYTSSKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 1302

[Close]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL
Match: A0A5A7UT37 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1186G00020 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.1e-115
Identity = 207/227 (91.19%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQA+EFS+SS
Sbjct: 1021 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSS 1080

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS +KTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 1081 DGGLLFERRLCVPSDSAIKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 1140

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            VS+CLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 1141 VSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 1200

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYTASKWA+LY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1201 KSAHFVPGKSTYTASKWAELYMSEIVRLHGVPVSIVSDRDARFTSKF 1247

[Close]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.1e-115
Identity = 209/227 (92.07%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 23   NLERAEIAVSVGAVSMQLAQLTVQPTLRQKIIDAQSNDPYLVEKHGLAEAGQAIEFSISS 82
            +LERAEIAVSVGAV+MQLAQLTVQPTLRQ+IIDAQSNDPYLVEK GLAEAGQ  EFS+SS
Sbjct: 1254 DLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSS 1313

Query: 83   DGGLLFERRLCVPSDSEVKTELLSEAHSFPFSMHPGSTKMYQDLKWVYWWCNMKREVAKF 142
            DGGLLFERRLCVPSDS VKTELLSEAHS PFSMHPGSTKMYQDLK VYWW NMKREVA+F
Sbjct: 1314 DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEF 1373

Query: 143  VSKCLVCQQVKAPRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLKGFTVIWVVVDKLT 202
            VSKCLVCQQVKAPRQKPAGLLQPLS+PEWKWENVSMDFITGLPRTL+GFTVIWVVVD+LT
Sbjct: 1374 VSKCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLT 1433

Query: 203  KSAHFVPVKSTYTASKWAQLYISEIVRLHGVPVSIVSDRDAHFTSKF 250
            KSAHFVP KSTYTASKWAQLY+SEIVRLHGVPVSIVSDRDA FTSKF
Sbjct: 1434 KSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKF 1480

The following BLAST results are available for this feature:

BLAST of Cmc01g0019571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036553.1	3.8e-115	92.07	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062112.1	4.9e-115	91.63	pol protein [Cucumis melo var. makuwa]	[more]
KAA0062835.1	4.9e-115	91.63	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059062.1	6.4e-115	91.19	pol protein [Cucumis melo var. makuwa]	[more]
TYK01613.1	8.4e-115	92.07	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0019571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	5.4e-24	34.55	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.4e-24	34.55	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	2.7e-23	28.23	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.7e-23	28.23	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.7e-23	28.23	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0Y9	1.8e-115	92.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5A7VAA9	2.4e-115	91.63	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold100G00010 PE...	[more]
A0A5A7V1N3	2.4e-115	91.63	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89...	[more]
A0A5A7UT37	3.1e-115	91.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5D3BPI1	4.1e-115	92.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of Cmc01g0019571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 98..154 e-value: 5.8E-16 score: 58.3
None	No IPR available	GENE3D	1.10.340.70		coord: 62..153 e-value: 1.4E-17 score: 65.6
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 90..249
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 163..249 e-value: 1.3E-17 score: 65.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 165..249 score: 9.740212
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 166..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0019571.1	Cmc01g0019571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding