Cmc01g0019411 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0019411
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 17213821 .. 17214543 (+)
RNA-Seq Expression	Cmc01g0019411
Synteny	Cmc01g0019411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGATTGGGAGGATGGAGTGGCCTCGTAGACTTTGTAGTAGTAAAAATGGATGACTTTGATGTGGTACTGGGAATGGAGTTCCTACTCGAACATCAGGTAATCTCAATGCCTTTGGCCAAATGCTTGGTGATCACTGGACCTACACCCTCGGTTTTACAGACTGGCCTACGTCAGCCAGATGGGTTGAAAATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGACGAACCAACATCCATCGCCATCCCACTCAATTCGTCAGAGAACTCAGAGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGCTTGCCCAAGTCTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTACTGAATGTAGGGTTCATTAGGCCTGCAAAAGCTTCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGAGAGTTTACGATTGTGCATTGATTATCGTGTCCTGAATAAGCTCACGGTTCGCAACAAGTATCCACTTCCCATATATATTGACTTGTTCAATCGCTTACATGAGGCAAAGTATTTTTCAAAGTTAGACTTGCGGTCGAGATACTACCAAGTGAGAATTGCATAG

mRNA sequence

ATGATAAGATTGGGAGGATGGAGTGGCCTCGTAGACTTTGTAGTAGTAAAAATGGATGACTTTGATGTGGTACTGGGAATGGAGTTCCTACTCGAACATCAGGTAATCTCAATGCCTTTGGCCAAATGCTTGGTGATCACTGGACCTACACCCTCGGTTTTACAGACTGGCCTACGTCAGCCAGATGGGTTGAAAATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGACGAACCAACATCCATCGCCATCCCACTCAATTCGTCAGAGAACTCAGAGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGCTTGCCCAAGTCTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTACTGAATGTAGGGTTCATTAGGCCTGCAAAAGCTTCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGAGAGTTTACGATTGTGCATTGATTATCGTGTCCTGAATAAGCTCACGGTTCGCAACAAGTATCCACTTCCCATATATATTGACTTGTTCAATCGCTTACATGAGGCAAAGTATTTTTCAAAGTTAGACTTGCGGTCGAGATACTACCAAGTGAGAATTGCATAG

Coding sequence (CDS)

ATGATAAGATTGGGAGGATGGAGTGGCCTCGTAGACTTTGTAGTAGTAAAAATGGATGACTTTGATGTGGTACTGGGAATGGAGTTCCTACTCGAACATCAGGTAATCTCAATGCCTTTGGCCAAATGCTTGGTGATCACTGGACCTACACCCTCGGTTTTACAGACTGGCCTACGTCAGCCAGATGGGTTGAAAATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGACGAACCAACATCCATCGCCATCCCACTCAATTCGTCAGAGAACTCAGAGGAGACAGTCCCTAAGGAGATCATGCGCGTGCTAGAGAAGTACCGTGATGTGATGCCCGATAGCTTGCCCAAGTCTTTGCCACCTCGAAGAATGATTGATCATGAGATCGAGTTGGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCACCTCCGGAGTTAGCTGAACTTCAGAAACAGTTAGATGAGTTACTGAATGTAGGGTTCATTAGGCCTGCAAAAGCTTCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGAGAGTTTACGATTGTGCATTGATTATCGTGTCCTGAATAAGCTCACGGTTCGCAACAAGTATCCACTTCCCATATATATTGACTTGTTCAATCGCTTACATGAGGCAAAGTATTTTTCAAAGTTAGACTTGCGGTCGAGATACTACCAAGTGAGAATTGCATAG

Protein sequence

MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQPDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVLFQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA

Homology

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BLAST of Cmc01g0019411 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 438.7 bits (1127), Expect = 3.2e-119
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 498 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 557

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPLNSSENS ETVPKEI+RVLEKYRDVMPDSLPKS
Sbjct: 558 PDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKS 617

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 618 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVL 677

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQKKKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 678 FQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 737

[Close]

BLAST of Cmc01g0019411 vs. NCBI nr
Match: KAA0032583.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 438.3 bits (1126), Expect = 4.1e-119
Identity = 222/240 (92.50%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDF+VVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 501 MIRLGGWSGLVDFIVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 560

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPL SSENS ETVPKEIMRVLEKYRDVMPDSLPKS
Sbjct: 561 PDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKS 620

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKASYGAPVL
Sbjct: 621 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKASYGAPVL 680

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQ+KKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 681 FQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 740

[Close]

BLAST of Cmc01g0019411 vs. NCBI nr
Match: KAA0063458.1 (uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa] >TYJ95769.1 uncharacterized protein E5676_scaffold110G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 437.6 bits (1124), Expect = 7.1e-119
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 436 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 495

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPLNSSENS ETVPKEI+RVLEKYRDVMPDSLPKS
Sbjct: 496 PDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKS 555

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 556 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKALYGAPVL 615

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQKKKD SLRLCIDYRVLNKLTVR KYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 616 FQKKKDGSLRLCIDYRVLNKLTVRKKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 675

[Close]

BLAST of Cmc01g0019411 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 436.8 bits (1122), Expect = 1.2e-118
Identity = 222/240 (92.50%), Postives = 227/240 (94.58%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 524 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 583

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPL SSENS ETVPKEIMRVLEKYRDVMPDSLPKS
Sbjct: 584 PDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKS 643

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 644 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVL 703

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQ+KKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 704 FQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 763

[Close]

BLAST of Cmc01g0019411 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 436.8 bits (1122), Expect = 1.2e-118
Identity = 222/240 (92.50%), Postives = 227/240 (94.58%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 528 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 587

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPL SSENS ETVPKEIMRVLEKYRDVMPDSLPKS
Sbjct: 588 PDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKS 647

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 648 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVL 707

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQ+KKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 708 FQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 767

[Close]

BLAST of Cmc01g0019411 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-19
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 107 EKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLD 166
           +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + 
Sbjct: 562 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 621

Query: 167 ELLNVGFIRPAKASYGAPVLFQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLH 226
           +LL+  FI P+K+   +PV+   KKD + RLC+DYR LNK T+ + +PLP   +L +R+ 
Sbjct: 622 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 681

Query: 227 EAKYFSKLDLRSRYYQV 238
            A+ F+ LDL S Y+Q+
Sbjct: 682 NAQIFTTLDLHSGYHQI 694

[Close]

BLAST of Cmc01g0019411 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-19
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 107 EKYRDVMPDSLP------KSLPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLD 166
           +KYR+++ + LP       ++P    + H+IE+ PGA+ P    Y +      E+ K + 
Sbjct: 588 QKYREIIRNDLPPRPADINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 647

Query: 167 ELLNVGFIRPAKASYGAPVLFQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLH 226
           +LL+  FI P+K+   +PV+   KKD + RLC+DYR LNK T+ + +PLP   +L +R+ 
Sbjct: 648 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 707

Query: 227 EAKYFSKLDLRSRYYQV 238
            A+ F+ LDL S Y+Q+
Sbjct: 708 NAQIFTTLDLHSGYHQI 720

[Close]

BLAST of Cmc01g0019411 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-15
Identity = 44/141 (31.21%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 101 EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELQKQ 160
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 161 LDELLNVGFIRPAKASYGAPVLFQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNR 220
           +++ L  G IR +KA    PV+F  KK+ +LR+ +DY+ LNK    N YPLP+   L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 221 LHEAKYFSKLDLRSRYYQVRI 240
           +  +  F+KLDL+S Y+ +R+
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRV 512

[Close]

BLAST of Cmc01g0019411 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-15
Identity = 44/141 (31.21%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 101 EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELQKQ 160
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 161 LDELLNVGFIRPAKASYGAPVLFQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNR 220
           +++ L  G IR +KA    PV+F  KK+ +LR+ +DY+ LNK    N YPLP+   L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 221 LHEAKYFSKLDLRSRYYQVRI 240
           +  +  F+KLDL+S Y+ +R+
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRV 512

[Close]

BLAST of Cmc01g0019411 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-15
Identity = 44/141 (31.21%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 101 EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELV-PGAKPPAKNAYRMAPPELAELQKQ 160
           E+  + ++++D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  +
Sbjct: 373 ELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRN-YPLPPGKMQAMNDE 432

Query: 161 LDELLNVGFIRPAKASYGAPVLFQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNR 220
           +++ L  G IR +KA    PV+F  KK+ +LR+ +DY+ LNK    N YPLP+   L  +
Sbjct: 433 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 492

Query: 221 LHEAKYFSKLDLRSRYYQVRI 240
           +  +  F+KLDL+S Y+ +R+
Sbjct: 493 IQGSTIFTKLDLKSAYHLIRV 512

[Close]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.5e-119
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 498 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 557

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPLNSSENS ETVPKEI+RVLEKYRDVMPDSLPKS
Sbjct: 558 PDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKS 617

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 618 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVL 677

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQKKKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 678 FQKKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 737

[Close]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL
Match: A0A5A7SQC7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00490 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.0e-119
Identity = 222/240 (92.50%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDF+VVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 501 MIRLGGWSGLVDFIVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 560

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPL SSENS ETVPKEIMRVLEKYRDVMPDSLPKS
Sbjct: 561 PDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKS 620

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKASYGAPVL
Sbjct: 621 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKASYGAPVL 680

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQ+KKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 681 FQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 740

[Close]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL
Match: A0A5D3B9T5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00320 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.4e-119
Identity = 223/240 (92.92%), Postives = 228/240 (95.00%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 436 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 495

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPLNSSENS ETVPKEI+RVLEKYRDVMPDSLPKS
Sbjct: 496 PDGLKMISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKS 555

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 556 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKALYGAPVL 615

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQKKKD SLRLCIDYRVLNKLTVR KYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 616 FQKKKDGSLRLCIDYRVLNKLTVRKKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 675

[Close]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.8e-119
Identity = 222/240 (92.50%), Postives = 227/240 (94.58%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 528 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 587

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPL SSENS ETVPKEIMRVLEKYRDVMPDSLPKS
Sbjct: 588 PDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKS 647

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 648 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVL 707

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQ+KKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 708 FQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 767

[Close]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.8e-119
Identity = 222/240 (92.50%), Postives = 227/240 (94.58%), Query Frame = 0


Query: 1   MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVISMPLAKCLVITGPTPSVLQTGLRQ 60
           MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVI MPLAKCLVITGPTPSV+QT LRQ
Sbjct: 528 MIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQTDLRQ 587

Query: 61  PDGLKMISAMQLKKGLSRDEPTSIAIPLNSSENSEETVPKEIMRVLEKYRDVMPDSLPKS 120
           PDGLKMISAMQLKKGLSRDEPT +AIPL SSENS ETVPKEIMRVLEKYRDVMPDSLPKS
Sbjct: 588 PDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKS 647

Query: 121 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELQKQLDELLNVGFIRPAKASYGAPVL 180
           LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAEL+KQLDELLN GFIRPAKA YGAPVL
Sbjct: 648 LPPRRMIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVL 707

Query: 181 FQKKKDESLRLCIDYRVLNKLTVRNKYPLPIYIDLFNRLHEAKYFSKLDLRSRYYQVRIA 240
           FQ+KKD SLRLCIDYR LNKLTVRNKYPLPI  DLF+RLH AKYFSKLDLRS YYQVRIA
Sbjct: 708 FQRKKDGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIA 767

The following BLAST results are available for this feature:

BLAST of Cmc01g0019411 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07954.1	3.2e-119	92.92	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032583.1	4.1e-119	92.50	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0063458.1	7.1e-119	92.92	uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0067557.1	1.2e-118	92.50	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.2e-118	92.50	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of Cmc01g0019411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.0e-19	36.50	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.0e-19	36.50	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.4e-15	31.21	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.4e-15	31.21	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.4e-15	31.21	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	1.5e-119	92.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5A7SQC7	2.0e-119	92.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5D3B9T5	3.4e-119	92.92	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C4R1	5.8e-119	92.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	5.8e-119	92.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc01g0019411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 127..238 e-value: 3.5E-39 score: 136.3
None	No IPR available	PANTHER	PTHR15503:SF11	RETROTRANSPOSON GAG-LIKE PROTEIN 6	coord: 3..239
None	No IPR available	CDD	cd01647	RT_LTR	coord: 166..240 e-value: 6.96097E-28 score: 102.674
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 207..234 e-value: 3.5E-39 score: 136.3
IPR032567	LDOC1-related	PANTHER	PTHR15503	LDOC1 RELATED	coord: 3..239
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 105..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0019411.1	Cmc01g0019411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding