Cmc01g0019381 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0019381
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr01: 17159566 .. 17160255 (-)
RNA-Seq Expression	Cmc01g0019381
Synteny	Cmc01g0019381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGGCGAACCAACGTTTATGAACATTCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGCGCGTGCTAGAAAAGTACCGTGACGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATTGAGTTGGTGTCAGGGGCAAAACCGGCTACGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTCGCTGAACTTTGGAAACAGTTAGATGAATTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGTCCTAAATAAGCTCACGGTTCGCAACAAGTATCCACTTTCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCGAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTACAGAGGGAGACGAGCCGAAGACAACCTATGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACTAATGCCCCTGTAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACTGGATGATATAG

mRNA sequence

ATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGGCGAACCAACGTTTATGAACATTCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGCGCGTGCTAGAAAAGTACCGTGACGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATTGAGTTGGTGTCAGGGGCAAAACCGGCTACGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTCGCTGAACTTTGGAAACAGTTAGATGAATTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGTCCTAAATAAGCTCACGGTTCGCAACAAGTATCCACTTTCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCGAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTACAGAGGGAGACGAGCCGAAGACAACCTATGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACTAATGCCCCTGTAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACTGGATGATATAG

Coding sequence (CDS)

ATGATCTCGGCCATGCAATTAAAGAAGGGTCTCTCTCGAGGCGAACCAACGTTTATGAACATTCCACTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAAGGAGATTATGCGCGTGCTAGAAAAGTACCGTGACGTGATGCCCGATAGTTTGCCCAAGTCTTTGCCACCTCGGAGAATGATTGATCATGAGATTGAGTTGGTGTCAGGGGCAAAACCGGCTACGAAGAATGCTTATCGTATGGCGCCTCCGGAGTTCGCTGAACTTTGGAAACAGTTAGATGAATTACTGAATGCAGGGTTCATTAGGCCTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAAGATGGGAGTTTACGATTGTGCATTGATTATCGTGTCCTAAATAAGCTCACGGTTCGCAACAAGTATCCACTTTCCATAATTACTGACTTGTTCGATCGCTTACATGGGGCGAAGTATTTTTCGAAGTTAGACTTGCGGTCGGGATACTACCAAGTGAGAATTACAGAGGGAGACGAGCCGAAGACAACCTATGTCACCCGATATGGTGCGTTCGAATTCCTCGTAATGCCATTTGGTCTCACTAATGCCCCTGTAACCTTCTGTACGTTGATGAACCAGGTCTTCCACGAATATCTCGATAAATTCGTAGTAGTCTACTGGATGATATAG

Protein sequence

MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRRMIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEPKTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVYWMI

Homology

[Close]

BLAST of Cmc01g0019381 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 213/226 (94.25%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPLNSSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRR
Sbjct: 563 MISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRR 622

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQKKK
Sbjct: 623 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKK 682

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 683 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 742

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 743 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 788

[Close]

BLAST of Cmc01g0019381 vs. NCBI nr
Match: KAA0062340.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 428.7 bits (1101), Expect = 3.1e-116
Identity = 212/226 (93.81%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQ+KKGLSR EPTFM IPLNSSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQVKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV G KP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQKKK
Sbjct: 653 MIDHEIELVPGEKPPAKNAYRMAPPELAELQKQLDELLNAGFIRPAKAPYGAPVLFQKKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYSAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

[Close]

BLAST of Cmc01g0019381 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 212/226 (93.81%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPL SSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 589 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 648

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQ+KK
Sbjct: 649 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 708

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 709 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 768

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 769 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 814

[Close]

BLAST of Cmc01g0019381 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 212/226 (93.81%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPL SSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQ+KK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

[Close]

BLAST of Cmc01g0019381 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116
Identity = 212/226 (93.81%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPL SSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQ+KK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

[Close]

BLAST of Cmc01g0019381 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-38
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 123 SLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEPKT 182
           SLR+CIDYR L K+T++NKYP+  + DLFDRL  A +F+KLDLRSGY+QVRI +GDEPKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 183 TYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           T VTRYG+FEF VMPFGLTNA  TFC LMN V +EYLD FVVVY
Sbjct: 65  TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVY 108

[Close]

BLAST of Cmc01g0019381 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 80/220 (36.36%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 17  TFMNIPLNSSENSGE----TVPKEIMRVLEKYRDVMPDSLP------KSLPPRRMIDHEI 76
           T  ++  N++++S +    T+P   + + +KYR+++ + LP       ++P    + H+I
Sbjct: 536 TIQSVEPNATDHSNKDTFCTLP---VWLQQKYREIIRNDLPPRPADINNIP----VKHDI 595

Query: 77  ELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRL 136
           E+  GA+      Y +      E+ K + +LL+  FI P+K+P  +PV+   KKDG+ RL
Sbjct: 596 EIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRL 655

Query: 137 CIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEPKTTYVT 196
           C+DYR LNK T+ + +PL  I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT +VT
Sbjct: 656 CVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVT 715

Query: 197 RYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
             G +E+ VMPFGL NAP TF   M   F +   +FV VY
Sbjct: 716 PSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVY 746

[Close]

BLAST of Cmc01g0019381 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 80/220 (36.36%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 17  TFMNIPLNSSENSGE----TVPKEIMRVLEKYRDVMPDSLP------KSLPPRRMIDHEI 76
           T  ++  N++++S +    T+P   + + +KYR+++ + LP       ++P    + H+I
Sbjct: 562 TIQSVEPNATDHSNKDTFCTLP---VWLQQKYREIIRNDLPPRPADINNIP----VKHDI 621

Query: 77  ELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRL 136
           E+  GA+      Y +      E+ K + +LL+  FI P+K+P  +PV+   KKDG+ RL
Sbjct: 622 EIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRL 681

Query: 137 CIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEPKTTYVT 196
           C+DYR LNK T+ + +PL  I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT +VT
Sbjct: 682 CVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVT 741

Query: 197 RYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
             G +E+ VMPFGL NAP TF   M   F +   +FV VY
Sbjct: 742 PSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVY 772

[Close]

BLAST of Cmc01g0019381 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-29
Identity = 69/216 (31.94%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 20  NIPLNSSENSGETVPK--------EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELVS 79
           NI ++SS+++   + K        E+  + ++++D+  ++  + LP P + ++ E+EL  
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408

Query: 80  GAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDY 139
                    Y + P +   +  ++++ L +G IR +KA    PV+F  KK+G+LR+ +DY
Sbjct: 409 ENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDY 468

Query: 140 RVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEPKTTYVTRYGA 199
           + LNK    N YPL +I  L  ++ G+  F+KLDL+S Y+ +R+ +GDE K  +    G 
Sbjct: 469 KPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGV 528

Query: 200 FEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           FE+LVMP+G++ AP  F   +N +  E  +  VV Y
Sbjct: 529 FEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCY 564

[Close]

BLAST of Cmc01g0019381 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-29
Identity = 69/216 (31.94%), Postives = 122/216 (56.48%), Query Frame = 0


Query: 20  NIPLNSSENSGETVPK--------EIMRVLEKYRDVMPDSLPKSLP-PRRMIDHEIELVS 79
           NI ++SS+++   + K        E+  + ++++D+  ++  + LP P + ++ E+EL  
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408

Query: 80  GAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKKDGSLRLCIDY 139
                    Y + P +   +  ++++ L +G IR +KA    PV+F  KK+G+LR+ +DY
Sbjct: 409 ENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDY 468

Query: 140 RVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEPKTTYVTRYGA 199
           + LNK    N YPL +I  L  ++ G+  F+KLDL+S Y+ +R+ +GDE K  +    G 
Sbjct: 469 KPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGV 528

Query: 200 FEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           FE+LVMP+G++ AP  F   +N +  E  +  VV Y
Sbjct: 529 FEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCY 564

[Close]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.2e-117
Identity = 213/226 (94.25%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPLNSSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRR
Sbjct: 563 MISAMQLKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRR 622

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQKKK
Sbjct: 623 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQKKK 682

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 683 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 742

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 743 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 788

[Close]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL
Match: A0A5A7V526 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00980 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.5e-116
Identity = 212/226 (93.81%), Postives = 214/226 (94.69%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQ+KKGLSR EPTFM IPLNSSENSGETVPKEI+RVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQVKKGLSRDEPTFMAIPLNSSENSGETVPKEIVRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV G KP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQKKK
Sbjct: 653 MIDHEIELVPGEKPPAKNAYRMAPPELAELQKQLDELLNAGFIRPAKAPYGAPVLFQKKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRY AFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYSAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

[Close]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 212/226 (93.81%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPL SSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQ+KK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

[Close]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 212/226 (93.81%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPL SSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQ+KK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

[Close]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116
Identity = 212/226 (93.81%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 1   MISAMQLKKGLSRGEPTFMNIPLNSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 60
           MISAMQLKKGLSR EPTFM IPL SSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR
Sbjct: 593 MISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVLEKYRDVMPDSLPKSLPPRR 652

Query: 61  MIDHEIELVSGAKPATKNAYRMAPPEFAELWKQLDELLNAGFIRPAKAPYGAPVLFQKKK 120
           MIDHEIELV GAKP  KNAYRMAPPE AEL KQLDELLNAGFIRPAKAPYGAPVLFQ+KK
Sbjct: 653 MIDHEIELVPGAKPPAKNAYRMAPPELAELRKQLDELLNAGFIRPAKAPYGAPVLFQRKK 712

Query: 121 DGSLRLCIDYRVLNKLTVRNKYPLSIITDLFDRLHGAKYFSKLDLRSGYYQVRITEGDEP 180
           DGSLRLCIDYR LNKLTVRNKYPL IITDLFDRLHGAKYFSKLDLRSGYYQVRI EGDEP
Sbjct: 713 DGSLRLCIDYRALNKLTVRNKYPLPIITDLFDRLHGAKYFSKLDLRSGYYQVRIAEGDEP 772

Query: 181 KTTYVTRYGAFEFLVMPFGLTNAPVTFCTLMNQVFHEYLDKFVVVY 227
           KTT VTRYGAFEFLVMPFGLTNAP TFCTLMNQVFHEYLDKFVVVY
Sbjct: 773 KTTCVTRYGAFEFLVMPFGLTNAPATFCTLMNQVFHEYLDKFVVVY 818

The following BLAST results are available for this feature:

BLAST of Cmc01g0019381 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07954.1	1.1e-116	94.25	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062340.1	3.1e-116	93.81	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067557.1	4.1e-116	93.81	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	4.1e-116	93.81	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	4.1e-116	93.81	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc01g0019381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	2.7e-38	72.12	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	5.9e-33	36.36	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.9e-33	36.36	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	3.0e-29	31.94	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.0e-29	31.94	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	5.2e-117	94.25	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5A7V526	1.5e-116	93.81	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00980 PE...	[more]
A0A5D3C4R1	2.0e-116	93.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	2.0e-116	93.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	2.0e-116	93.81	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Cmc01g0019381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 62..202 e-value: 7.4E-60 score: 203.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 31..225
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 31..225
None	No IPR available	CDD	cd01647	RT_LTR	coord: 101..226 e-value: 2.78675E-61 score: 188.188
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 142..226 e-value: 7.4E-60 score: 203.9
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 118..226 e-value: 8.3E-14 score: 51.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 40..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0019381.1	Cmc01g0019381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding