Cmc01g0018421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc01g0018421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr01: 16194569 .. 16195901 (+)
RNA-Seq Expression	Cmc01g0018421
Synteny	Cmc01g0018421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTAATTATTCGCTTATGAACACTCCTAGTCCTGCTAACTCTTTACCTCCCATTTATGCTGCTGATGGAAATTGTATGAACACCACTCACATTGACACCATTAATACCCCCAGTTTGAATCTTTCTCACACTTACTGTGTCCTAGACTTAACCTTTAATCTAGTATCTGTTGGTCAATTGTGCGATCTTGGTTTAACTGTCACTTTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGAGACATACGATTAGGACGGGTCACAAAGTGAGAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTCCTCCTTCACCCATCTCTGCTCCTATCACTGACTCTGATACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTCCTGAAAAACTGCATCATTTAATTTCTATTAACAATTTAAATAGTATTACCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAACCTGCGTTGTCTTTCTCTACATCCACTTTTATATGTAATAAACCGTTTGATTTAATCCATTCTGACATTTGGGGTTTTGCCCCTACCTCCATTGTCCATGGTTATCGCTATTATGTTTTATTCATTGATCATTTCTCTCGATTTACATGGATTTATTTTCTCAAACACCATTCTGAATTATCTGTCATTTATATTGAGTTTGCTAATATGATTCACACCCAATTTTCTTGTCCTATCAAAATCCTTCGCACTGACAATGCCTTGGAGTATAAAGACTCCATTCTTCTATCTTTTCTCTCCCAACAGGGCACTCTTGTTCAACGCTCCTGCTCCCACACTTTTCAACAAAAATGGACGTGCTGAGCGCAAACATCGCCACATTCTTGACTCAGTACGTGTCCTCCTTCTCTCTACCTCATGCCCTAAGAAATTTTGGGGTGAAGCAGCTCTTACATCCGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAACATCTCTCCATTCGAACGATTATATGGTACTCCTCCAAACTATTCTAACCTTAAAGTCTTTTGTTGTGCTAGCTTTGTTCTCCTGCATCCTCATGAACACACTAAACTTGAACCACGTGCCTGCCTCTGTTGTTTTCTTGGCTATGACACAGAACATAAAGGTTTTCGTTGTTGGGATCCTCTTTCCAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGCTTGTCCTCCTTCCACTCTCCTTCTCTAGTCTTCAACCTTTCTTCACTGACTCATCTGTTGACCTTTTCTCTCTCTGAGTCCACTTCTGATAATGAGCTTGCTTAA

mRNA sequence

ATGACATCTAATTATTCGCTTATGAACACTCCTAGTCCTGCTAACTCTTTACCTCCCATTTATGCTGCTGATGGAAATTGTATGAACACCACTCACATTGACACCATTAATACCCCCAGTTTGAATCTTTCTCACACTTACTGTGTCCTAGACTTAACCTTTAATCTAGTATCTGTTGGTCAATTGTGCGATCTTGGTTTAACTGTCACTTTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGAGACATACGATTAGGACGGGTCACAAAGTGAGAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTCCTCCTTCACCCATCTCTGCTCCTATCACTGACTCTGATACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTCCTGAAAAACTGCATCATTTAATTTCTATTAACAATTTAAATAGTATTACCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAACCTGCGTTGTCTTTCTCTACATCCACTTTTATATGTAATAAACCGTTTGATTTAATCCATTCTGACATTTGGGGTTTTGCCCCTACCTCCATTGTCCATGGTTATCGCTATTATGTTTTATTCATTGATCATTTCTCTCGATTTACATGGATTTATTTTCTCAAACACCATTCTGAATTATCTGTCATTTATATTGAGTTTGCTAATATGATTCACACCCAATTTTCTTGTCCTATCAAAATCCTTCGCACTGACAATGCCTTGGAGGCACTCTTGTTCAACGCTCCTGCTCCCACACTTTTCAACAAAAATGGACGTGCTGAGCGCAAACATCGCCACATTCTTGACTCAGTACGTGTCCTCCTTCTCTCTACCTCATGCCCTAAGAAATTTTGGGGTGAAGCAGCTCTTACATCCGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAACATCTCTCCATTCGAACGATTATATGGTACTCCTCCAAACTATTCTAACCTTAAAGTCTTTTGTTGTGCTAGCTTTGTTCTCCTGCATCCTCATGAACACACTAAACTTGAACCACGTGCCTGCCTCTGTTGTTTTCTTGGCTATGACACAGAACATAAAGGTTTTCGTTGTTGGGATCCTCTTTCCAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGCTTGTCCTCCTTCCACTCTCCTTCTCTAGTCTTCAACCTTTCTTCACTGACTCATCTGTTGACCTTTTCTCTCTCTGAGTCCACTTCTGATAATGAGCTTGCTTAA

Coding sequence (CDS)

ATGACATCTAATTATTCGCTTATGAACACTCCTAGTCCTGCTAACTCTTTACCTCCCATTTATGCTGCTGATGGAAATTGTATGAACACCACTCACATTGACACCATTAATACCCCCAGTTTGAATCTTTCTCACACTTACTGTGTCCTAGACTTAACCTTTAATCTAGTATCTGTTGGTCAATTGTGCGATCTTGGTTTAACTGTCACTTTTTCTCCCAATGGTTGTCAGGTTCAGGATCCGCAGACGAGACATACGATTAGGACGGGTCACAAAGTGAGAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTCCTCCTTCACCCATCTCTGCTCCTATCACTGACTCTGATACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTCCTGAAAAACTGCATCATTTAATTTCTATTAACAATTTAAATAGTATTACCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAACCTGCGTTGTCTTTCTCTACATCCACTTTTATATGTAATAAACCGTTTGATTTAATCCATTCTGACATTTGGGGTTTTGCCCCTACCTCCATTGTCCATGGTTATCGCTATTATGTTTTATTCATTGATCATTTCTCTCGATTTACATGGATTTATTTTCTCAAACACCATTCTGAATTATCTGTCATTTATATTGAGTTTGCTAATATGATTCACACCCAATTTTCTTGTCCTATCAAAATCCTTCGCACTGACAATGCCTTGGAGGCACTCTTGTTCAACGCTCCTGCTCCCACACTTTTCAACAAAAATGGACGTGCTGAGCGCAAACATCGCCACATTCTTGACTCAGTACGTGTCCTCCTTCTCTCTACCTCATGCCCTAAGAAATTTTGGGGTGAAGCAGCTCTTACATCCGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAACATCTCTCCATTCGAACGATTATATGGTACTCCTCCAAACTATTCTAACCTTAAAGTCTTTTGTTGTGCTAGCTTTGTTCTCCTGCATCCTCATGAACACACTAAACTTGAACCACGTGCCTGCCTCTGTTGTTTTCTTGGCTATGACACAGAACATAAAGGTTTTCGTTGTTGGGATCCTCTTTCCAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGCTTGTCCTCCTTCCACTCTCCTTCTCTAGTCTTCAACCTTTCTTCACTGACTCATCTGTTGACCTTTTCTCTCTCTGAGTCCACTTCTGATAATGAGCTTGCTTAA

Protein sequence

MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVGQLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTYQWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDLIHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCPIKILRTDNALEALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLSTSCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHEHTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHSPSLVFNLSSLTHLLTFSLSESTSDNELA

Homology

[Close]

BLAST of Cmc01g0018421 vs. NCBI nr
Match: KAA0025466.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 719.2 bits (1855), Expect = 2.2e-203
Identity = 365/447 (81.66%), Postives = 375/447 (83.89%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 267 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 326

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 327 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 386

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 387 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 446

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 447 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 506

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 507 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 566

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 567 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 626

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 627 HTKLEPRARLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 686

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 687 QSFFTDTSID---LFPLSESTPGNELA 709

[Close]

BLAST of Cmc01g0018421 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 716.5 bits (1848), Expect = 1.4e-202
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. NCBI nr
Match: TYK26360.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 716.5 bits (1848), Expect = 1.4e-202
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. NCBI nr
Match: KAA0041601.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0065379.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK12000.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 716.5 bits (1848), Expect = 1.4e-202
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. NCBI nr
Match: TYK04714.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 716.5 bits (1848), Expect = 1.4e-202
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.6e-61
Identity = 147/423 (34.75%), Postives = 225/423 (53.19%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHI--DTINTPS--LNLSHTYCVLDLTFNL 60
           +TS+++ ++   P      +  ADG+ +  +H    +++T S  LNL +   V ++  NL
Sbjct: 341 ITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLHNILYVPNIHKNL 400

Query: 61  VSVGQLCDL-GLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPIT 120
           +SV +LC+  G++V F P   QV+D  T   +  G     L+E       P S  ++P +
Sbjct: 401 ISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQPVSLFASPSS 460

Query: 121 DSDTYQWHLRLGHASPEKLHHLI---SINNLNSITKFVPFNCLNCKLAKQPALSFSTSTF 180
            +    WH RLGH +P  L+ +I   S++ LN   KF+  +C +C + K   + FS ST 
Sbjct: 461 KATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFL--SCSDCLINKSNKVPFSQSTI 520

Query: 181 ICNKPFDLIHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANM 240
              +P + I+SD+W  +P      YRYYV+F+DHF+R+TW+Y LK  S++   +I F N+
Sbjct: 521 NSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL 580

Query: 241 IHTQFSCPIKILRTDNALE-----------ALLFNAPAPTLFNKNGRAERKHRHILDSVR 300
           +  +F   I    +DN  E            +      P     NG +ERKHRHI+++  
Sbjct: 581 LENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGL 640

Query: 301 VLLLSTSCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFV 360
            LL   S PK +W  A   +VY INRLP+ +LQ  SPF++L+GT PNY  L+VF CA + 
Sbjct: 641 TLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYP 700

Query: 361 LLHPHEHTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTM-FSRLSSF 404
            L P+   KL+ ++  C FLGY      + C    ++RL ISRHV F E+   FS   + 
Sbjct: 701 WLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCFPFSNYLAT 760

[Close]

BLAST of Cmc01g0018421 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.6e-60
Identity = 141/408 (34.56%), Postives = 216/408 (52.94%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTP----SLNLSHTYCVLDLTFNL 60
           +TS+++ ++   P      +  ADG+ +  TH  + + P    SL+L+    V ++  NL
Sbjct: 320 ITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNL 379

Query: 61  VSVGQLCDLG-LTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPIT 120
           +SV +LC+   ++V F P   QV+D  T   +  G     L+E         S  ++P +
Sbjct: 380 ISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCS 439

Query: 121 DSDTYQWHLRLGHASPEKLHHLISINNLNSIT-KFVPFNCLNCKLAKQPALSFSTSTFIC 180
            +    WH RLGH S   L+ +IS ++L  +       +C +C + K   + FS ST   
Sbjct: 440 KATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITS 499

Query: 181 NKPFDLIHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIH 240
           +KP + I+SD+W  +P   +  YRYYV+F+DHF+R+TW+Y LK  S++   +I F +++ 
Sbjct: 500 SKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVE 559

Query: 241 TQFSCPIKILRTDNALEALL------------FNAPAPTLFNKNGRAERKHRHILDSVRV 300
            +F   I  L +DN  E ++            F +P P     NG +ERKHRHI++    
Sbjct: 560 NRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSP-PHTPEHNGLSERKHRHIVEMGLT 619

Query: 301 LLLSTSCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVL 360
           LL   S PK +W  A   +VY INRLP+ +LQ  SPF++L+G PPNY  LKVF CA +  
Sbjct: 620 LLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPW 679

Query: 361 LHPHEHTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWE 391
           L P+   KLE ++  C F+GY      + C    + RL  SRHV F E
Sbjct: 680 LRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDE 725

[Close]

BLAST of Cmc01g0018421 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.8e-36
Identity = 96/283 (33.92%), Postives = 139/283 (49.12%), Query Frame = 0


Query: 122 WHLRLGHASPEKLHHLISINNLNSITKFVPFN-CLNCKLAKQPALSFSTSTFICNKPFDL 181
           WH R+GH S EK   +++  +L S  K      C  C   KQ  +SF TS+       DL
Sbjct: 425 WHKRMGHMS-EKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 484

Query: 182 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 241
           ++SD+ G      + G +Y+V FID  SR  W+Y LK   ++  ++ +F  ++  +    
Sbjct: 485 VYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRK 544

Query: 242 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 301
           +K LR+DN  E              +      P     NG AER +R I++ VR +L   
Sbjct: 545 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 604

Query: 302 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 361
             PK FWGEA  T+ Y INR PS  L    P         +YS+LKVF C +F  +   +
Sbjct: 605 KLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQ 664

Query: 362 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWE 391
            TKL+ ++  C F+GY  E  G+R WDP+  ++  SR V F E
Sbjct: 665 RTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRE 706

[Close]

BLAST of Cmc01g0018421 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 123.6 bits (309), Expect = 5.3e-27
Identity = 95/374 (25.40%), Postives = 163/374 (43.58%), Query Frame = 0


Query: 55  NLVSVGQLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPI 114
           NL+SV +L + G+++ F  +G  +         + G  V +   +L+         + P+
Sbjct: 357 NLMSVKRLQEAGMSIEFDKSGVTIS--------KNGLMVVKNSGMLN---------NVPV 416

Query: 115 TDSDTYQ-----------WHLRLGHASPEKLHHL---------ISINNLNSITKFVPFNC 174
            +   Y            WH R GH S  KL  +           +NNL  ++  +   C
Sbjct: 417 INFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNL-ELSCEICEPC 476

Query: 175 LNCKLAKQPALSFSTSTFICNKPFDLIHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIY 234
           LN K A+ P       T I  +P  ++HSD+ G      +    Y+V+F+D F+ +   Y
Sbjct: 477 LNGKQARLPFKQLKDKTHI-KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 536

Query: 235 FLKHHSELSVIYIEFANMIHTQFSCPIKILRTDNALE-------------ALLFNAPAPT 294
            +K+ S++  ++ +F       F+  +  L  DN  E              + ++   P 
Sbjct: 537 LIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPH 596

Query: 295 LFNKNGRAERKHRHILDSVRVLLLSTSCPKKFWGEAALTSVYTINRLPSSVLQNIS--PF 354
               NG +ER  R I +  R ++      K FWGEA LT+ Y INR+PS  L + S  P+
Sbjct: 597 TPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPY 656

Query: 355 ERLYGTPPNYSNLKVFCCASFVLLHPHEHTKLEPRACLCCFLGYDTEHKGFRCWDPLSNR 394
           E  +   P   +L+VF    +V +  ++  K + ++    F+GY  E  GF+ WD ++ +
Sbjct: 657 EMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEK 708

[Close]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL
Match: A0A5A7SI12 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00670 PE=4 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 1.1e-203
Identity = 365/447 (81.66%), Postives = 375/447 (83.89%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 267 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 326

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 327 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 386

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 387 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 446

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 447 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 506

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 507 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 566

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 567 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 626

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 627 HTKLEPRARLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 686

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 687 QSFFTDTSID---LFPLSESTPGNELA 709

[Close]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.8e-203
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL
Match: A0A5D3D7V8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00480 PE=4 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.8e-203
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL
Match: A0A5D3C0D7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00020 PE=4 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.8e-203
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

[Close]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL
Match: A0A5D3DT06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00190 PE=4 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.8e-203
Identity = 364/447 (81.43%), Postives = 374/447 (83.67%), Query Frame = 0


Query: 1   MTSNYSLMNTPSPANSLPPIYAADGNCMNTTHIDTINTPSLNLSHTYCVLDLTFNLVSVG 60
           MTS+YSLMNTPSP  SLPPIYAADGNCMN TH+ TINTPSLNL HTYCV +LTFNLVSVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVTFSPNGCQVQDPQTRHTIRTGHKVRRLFELLSLQVPPPSPISAPITDSDTY 120
           QLCDLG TV+FS NGCQVQDPQT  TI TG KV RLFELLSLQVP PS ISAP+TDSDTY
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPS-ISAPVTDSDTY 449

Query: 121 QWHLRLGHASPEKLHHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTFICNKPFDL 180
           QWHLRLGHASPEKL HLISINNLNSITKFVPFNCLNCKLAKQPALSFSTST IC+KPFDL
Sbjct: 450 QWHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDL 509

Query: 181 IHSDIWGFAPTSIVHGYRYYVLFIDHFSRFTWIYFLKHHSELSVIYIEFANMIHTQFSCP 240
           IHSDIWG APTS VHGYRYYVLFID FSRFTWIYFLKH SELS  YIEFANMI TQFSCP
Sbjct: 510 IHSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCP 569

Query: 241 IKILRTDNALE-------------ALLFNAPAPTLFNKNGRAERKHRHILDSVRVLLLST 300
           IK LRTDNALE               L     P    +NGRAERKHRHILDSVR LLLS 
Sbjct: 570 IKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSA 629

Query: 301 SCPKKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFCCASFVLLHPHE 360
           SCP+KFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVF CA FVLL PHE
Sbjct: 630 SCPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHE 689

Query: 361 HTKLEPRACLCCFLGYDTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH----SP 420
           HTKLEPRA LCCFLGY TEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFH    SP
Sbjct: 690 HTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSFHASFSSP 749

Query: 421 SLVFNLSSLTHLLTFSLSESTSDNELA 431
              F  +S+     F LSEST  NELA
Sbjct: 750 QSFFTDTSID---LFPLSESTPGNELA 772

The following BLAST results are available for this feature:

BLAST of Cmc01g0018421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025466.1	2.2e-203	81.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK19656.1	1.4e-202	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK26360.1	1.4e-202	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0041601.1	1.4e-202	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04714.1	1.4e-202	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc01g0018421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.6e-61	34.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.6e-60	34.56	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	4.8e-36	33.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.3e-27	25.40	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SI12	1.1e-203	81.66	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VIT8	6.8e-203	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D7V8	6.8e-203	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3C0D7	6.8e-203	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DT06	6.8e-203	81.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc01g0018421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 110..162 e-value: 1.0E-8 score: 34.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 260..335 e-value: 3.1E-9 score: 38.4 coord: 172..253 e-value: 2.4E-13 score: 51.8
None	No IPR available	PANTHER	PTHR11439:SF326	SUBFAMILY NOT NAMED	coord: 122..391
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 122..391
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 176..335

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc01g0018421.1	Cmc01g0018421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding